data_8IXA
#
_model_server_result.job_id            rcS_nyvfOcAiAb_rdstepw 
_model_server_result.datetime_utc      '2025-03-12 04:41:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ixa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":401}' 
#
_entry.id    8IXA 
#
_exptl.entry_id    8IXA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    27-meric 
_pdbx_struct_assembly.oligomeric_count      27 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 DA N N 
? 6 GA N N 
? 6 JA N N 
? 6 MA N N 
? 6 PA N N 
? 6 SA N N 
? 6 VA N N 
? 6 YA N N 
? 6 BB N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8IXA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
BA 4 GTP Q 1 501 13 GTP GTP . 
CA 5 G2P Q 1 502 501 G2P G2P . 
DA 6 ATP Y 1 401 1 ATP ATP . 
EA 4 GTP J 1 501 13 GTP GTP . 
FA 5 G2P J 1 502 501 G2P G2P . 
GA 6 ATP S 1 401 1 ATP ATP . 
HA 4 GTP K 1 501 13 GTP GTP . 
IA 5 G2P K 1 502 501 G2P G2P . 
JA 6 ATP T 1 401 1 ATP ATP . 
KA 4 GTP L 1 501 13 GTP GTP . 
LA 5 G2P L 1 502 501 G2P G2P . 
MA 6 ATP U 1 401 1 ATP ATP . 
NA 4 GTP M 1 501 13 GTP GTP . 
OA 5 G2P M 1 502 501 G2P G2P . 
PA 6 ATP V 1 401 1 ATP ATP . 
QA 4 GTP N 1 501 13 GTP GTP . 
RA 5 G2P N 1 502 501 G2P G2P . 
SA 6 ATP W 1 401 1 ATP ATP . 
TA 4 GTP O 1 501 13 GTP GTP . 
UA 5 G2P O 1 502 501 G2P G2P . 
VA 6 ATP X 1 401 1 ATP ATP . 
WA 4 GTP P 1 501 13 GTP GTP . 
XA 5 G2P P 1 502 501 G2P G2P . 
YA 6 ATP Z 1 401 1 ATP ATP . 
ZA 4 GTP R 1 501 13 GTP GTP . 
AB 5 G2P R 1 502 501 G2P G2P . 
BB 6 ATP a 1 401 1 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . JA 6 257.984 463.806 251.243 1 154.6 ? PG ATP 401 T 1 
HETATM 2 O O1G ATP . . . JA 6 259.289 463.436 251.9 1 154.6 ? O1G ATP 401 T 1 
HETATM 3 O O2G ATP . . . JA 6 258.108 464.961 250.278 1 154.6 ? O2G ATP 401 T 1 
HETATM 4 O O3G ATP . . . JA 6 257.211 462.63 250.703 1 154.6 ? O3G ATP 401 T 1 
HETATM 5 P PB ATP . . . JA 6 256.523 465.883 252.477 1 154.6 ? PB ATP 401 T 1 
HETATM 6 O O1B ATP . . . JA 6 257.628 466.76 253.015 1 154.6 ? O1B ATP 401 T 1 
HETATM 7 O O2B ATP . . . JA 6 255.876 466.202 251.153 1 154.6 ? O2B ATP 401 T 1 
HETATM 8 O O3B ATP . . . JA 6 257.048 464.359 252.435 1 154.6 ? O3B ATP 401 T 1 
HETATM 9 P PA ATP . . . JA 6 253.818 465.962 253.081 1 154.6 ? PA ATP 401 T 1 
HETATM 10 O O1A ATP . . . JA 6 253.483 464.701 252.32 1 154.6 ? O1A ATP 401 T 1 
HETATM 11 O O2A ATP . . . JA 6 253.65 467.296 252.395 1 154.6 ? O2A ATP 401 T 1 
HETATM 12 O O3A ATP . . . JA 6 255.345 465.814 253.573 1 154.6 ? O3A ATP 401 T 1 
HETATM 13 O O5' ATP . . . JA 6 252.958 465.988 254.445 1 154.6 ? O5' ATP 401 T 1 
HETATM 14 C C5' ATP . . . JA 6 251.778 465.196 254.58 1 154.6 ? C5' ATP 401 T 1 
HETATM 15 C C4' ATP . . . JA 6 250.769 465.845 255.527 1 154.6 ? C4' ATP 401 T 1 
HETATM 16 O O4' ATP . . . JA 6 251.368 466.86 256.339 1 154.6 ? O4' ATP 401 T 1 
HETATM 17 C C3' ATP . . . JA 6 249.623 466.531 254.795 1 154.6 ? C3' ATP 401 T 1 
HETATM 18 O O3' ATP . . . JA 6 248.545 465.622 254.536 1 154.6 ? O3' ATP 401 T 1 
HETATM 19 C C2' ATP . . . JA 6 249.238 467.707 255.681 1 154.6 ? C2' ATP 401 T 1 
HETATM 20 O O2' ATP . . . JA 6 248.048 467.498 256.458 1 154.6 ? O2' ATP 401 T 1 
HETATM 21 C C1' ATP . . . JA 6 250.411 467.886 256.639 1 154.6 ? C1' ATP 401 T 1 
HETATM 22 N N9 ATP . . . JA 6 251.013 469.235 256.473 1 154.6 ? N9 ATP 401 T 1 
HETATM 23 C C8 ATP . . . JA 6 252.203 469.494 255.898 1 154.6 ? C8 ATP 401 T 1 
HETATM 24 N N7 ATP . . . JA 6 252.463 470.827 255.907 1 154.6 ? N7 ATP 401 T 1 
HETATM 25 C C5 ATP . . . JA 6 251.425 471.444 256.5 1 154.6 ? C5 ATP 401 T 1 
HETATM 26 C C6 ATP . . . JA 6 251.057 472.839 256.834 1 154.6 ? C6 ATP 401 T 1 
HETATM 27 N N6 ATP . . . JA 6 251.874 473.874 256.528 1 154.6 ? N6 ATP 401 T 1 
HETATM 28 N N1 ATP . . . JA 6 249.875 473.045 257.456 1 154.6 ? N1 ATP 401 T 1 
HETATM 29 C C2 ATP . . . JA 6 249.045 472.033 257.772 1 154.6 ? C2 ATP 401 T 1 
HETATM 30 N N3 ATP . . . JA 6 249.322 470.745 257.495 1 154.6 ? N3 ATP 401 T 1 
HETATM 31 C C4 ATP . . . JA 6 250.473 470.39 256.876 1 154.6 ? C4 ATP 401 T 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    110 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#