data_8IXA
#
_model_server_result.job_id            vGyq9lln-QbRtGPc65PNGQ 
_model_server_result.datetime_utc      '2025-03-12 04:38:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ixa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"MA","auth_seq_id":401}' 
#
_entry.id    8IXA 
#
_exptl.entry_id    8IXA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    27-meric 
_pdbx_struct_assembly.oligomeric_count      27 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 DA N N 
? 6 GA N N 
? 6 JA N N 
? 6 MA N N 
? 6 PA N N 
? 6 SA N N 
? 6 VA N N 
? 6 YA N N 
? 6 BB N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8IXA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
BA 4 GTP Q 1 501 13 GTP GTP . 
CA 5 G2P Q 1 502 501 G2P G2P . 
DA 6 ATP Y 1 401 1 ATP ATP . 
EA 4 GTP J 1 501 13 GTP GTP . 
FA 5 G2P J 1 502 501 G2P G2P . 
GA 6 ATP S 1 401 1 ATP ATP . 
HA 4 GTP K 1 501 13 GTP GTP . 
IA 5 G2P K 1 502 501 G2P G2P . 
JA 6 ATP T 1 401 1 ATP ATP . 
KA 4 GTP L 1 501 13 GTP GTP . 
LA 5 G2P L 1 502 501 G2P G2P . 
MA 6 ATP U 1 401 1 ATP ATP . 
NA 4 GTP M 1 501 13 GTP GTP . 
OA 5 G2P M 1 502 501 G2P G2P . 
PA 6 ATP V 1 401 1 ATP ATP . 
QA 4 GTP N 1 501 13 GTP GTP . 
RA 5 G2P N 1 502 501 G2P G2P . 
SA 6 ATP W 1 401 1 ATP ATP . 
TA 4 GTP O 1 501 13 GTP GTP . 
UA 5 G2P O 1 502 501 G2P G2P . 
VA 6 ATP X 1 401 1 ATP ATP . 
WA 4 GTP P 1 501 13 GTP GTP . 
XA 5 G2P P 1 502 501 G2P G2P . 
YA 6 ATP Z 1 401 1 ATP ATP . 
ZA 4 GTP R 1 501 13 GTP GTP . 
AB 5 G2P R 1 502 501 G2P G2P . 
BB 6 ATP a 1 401 1 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . MA 6 210.975 416.766 242.456 1 154.6 ? PG ATP 401 U 1 
HETATM 2 O O1G ATP . . . MA 6 212.312 416.998 243.112 1 154.6 ? O1G ATP 401 U 1 
HETATM 3 O O2G ATP . . . MA 6 210.586 417.86 241.491 1 154.6 ? O2G ATP 401 U 1 
HETATM 4 O O3G ATP . . . MA 6 210.789 415.371 241.915 1 154.6 ? O3G ATP 401 U 1 
HETATM 5 P PB ATP . . . MA 6 208.759 418.003 243.691 1 154.6 ? PB ATP 401 U 1 
HETATM 6 O O1B ATP . . . MA 6 209.373 419.273 244.229 1 154.6 ? O1B ATP 401 U 1 
HETATM 7 O O2B ATP . . . MA 6 208.036 418.01 242.367 1 154.6 ? O2B ATP 401 U 1 
HETATM 8 O O3B ATP . . . MA 6 209.893 416.857 243.648 1 154.6 ? O3B ATP 401 U 1 
HETATM 9 P PA ATP . . . MA 6 206.287 416.9 244.295 1 154.6 ? PA ATP 401 U 1 
HETATM 10 O O1A ATP . . . MA 6 206.532 415.619 243.533 1 154.6 ? O1A ATP 401 U 1 
HETATM 11 O O2A ATP . . . MA 6 205.557 418.03 243.61 1 154.6 ? O2A ATP 401 U 1 
HETATM 12 O O3A ATP . . . MA 6 207.727 417.429 244.786 1 154.6 ? O3A ATP 401 U 1 
HETATM 13 O O5' ATP . . . MA 6 205.501 416.551 245.659 1 154.6 ? O5' ATP 401 U 1 
HETATM 14 C C5' ATP . . . MA 6 204.782 415.325 245.794 1 154.6 ? C5' ATP 401 U 1 
HETATM 15 C C4' ATP . . . MA 6 203.591 415.471 246.741 1 154.6 ? C4' ATP 401 U 1 
HETATM 16 O O4' ATP . . . MA 6 203.691 416.646 247.553 1 154.6 ? O4' ATP 401 U 1 
HETATM 17 C C3' ATP . . . MA 6 202.26 415.593 246.01 1 154.6 ? C3' ATP 401 U 1 
HETATM 18 O O3' ATP . . . MA 6 201.684 414.306 245.75 1 154.6 ? O3' ATP 401 U 1 
HETATM 19 C C2' ATP . . . MA 6 201.404 416.485 246.897 1 154.6 ? C2' ATP 401 U 1 
HETATM 20 O O2' ATP . . . MA 6 200.423 415.78 247.673 1 154.6 ? O2' ATP 401 U 1 
HETATM 21 C C1' ATP . . . MA 6 202.384 417.154 247.854 1 154.6 ? C1' ATP 401 U 1 
HETATM 22 N N9 ATP . . . MA 6 202.34 418.631 247.689 1 154.6 ? N9 ATP 401 U 1 
HETATM 23 C C8 ATP . . . MA 6 203.3 419.381 247.114 1 154.6 ? C8 ATP 401 U 1 
HETATM 24 N N7 ATP . . . MA 6 202.956 420.695 247.123 1 154.6 ? N7 ATP 401 U 1 
HETATM 25 C C5 ATP . . . MA 6 201.754 420.8 247.716 1 154.6 ? C5 ATP 401 U 1 
HETATM 26 C C6 ATP . . . MA 6 200.817 421.898 248.051 1 154.6 ? C6 ATP 401 U 1 
HETATM 27 N N6 ATP . . . MA 6 201.104 423.185 247.746 1 154.6 ? N6 ATP 401 U 1 
HETATM 28 N N1 ATP . . . MA 6 199.663 421.57 248.674 1 154.6 ? N1 ATP 401 U 1 
HETATM 29 C C2 ATP . . . MA 6 199.354 420.299 248.989 1 154.6 ? C2 ATP 401 U 1 
HETATM 30 N N3 ATP . . . MA 6 200.162 419.259 248.712 1 154.6 ? N3 ATP 401 U 1 
HETATM 31 C C4 ATP . . . MA 6 201.353 419.438 248.092 1 154.6 ? C4 ATP 401 U 1 
#
_model_server_stats.io_time_ms              82 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    106 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#