data_8IXB
#
_model_server_result.job_id            C_IpM24KO97JVbn8h_uK9w 
_model_server_result.datetime_utc      '2025-03-13 19:18:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ixb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":501}' 
#
_entry.id    8IXB 
#
_exptl.entry_id    8IXB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8IXB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IXB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 P N N 
? 4 S N N 
? 4 V N N 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 230 n n 
PG O2G GTP sing 231 n n 
PG O3G GTP sing 232 n n 
PG O3B GTP sing 233 n n 
O2G HOG2 GTP sing 234 n n 
O3G HOG3 GTP sing 235 n n 
O3B PB GTP sing 236 n n 
PB O1B GTP doub 237 n n 
PB O2B GTP sing 238 n n 
PB O3A GTP sing 239 n n 
O2B HOB2 GTP sing 240 n n 
O3A PA GTP sing 241 n n 
PA O1A GTP doub 242 n n 
PA O2A GTP sing 243 n n 
PA O5' GTP sing 244 n n 
O2A HOA2 GTP sing 245 n n 
O5' C5' GTP sing 246 n n 
C5' C4' GTP sing 247 n n 
C5' H5' GTP sing 248 n n 
C5' "H5''" GTP sing 249 n n 
C4' O4' GTP sing 250 n n 
C4' C3' GTP sing 251 n n 
C4' H4' GTP sing 252 n n 
O4' C1' GTP sing 253 n n 
C3' O3' GTP sing 254 n n 
C3' C2' GTP sing 255 n n 
C3' H3' GTP sing 256 n n 
O3' HO3' GTP sing 257 n n 
C2' O2' GTP sing 258 n n 
C2' C1' GTP sing 259 n n 
C2' H2' GTP sing 260 n n 
O2' HO2' GTP sing 261 n n 
C1' N9 GTP sing 262 n n 
C1' H1' GTP sing 263 n n 
N9 C8 GTP sing 264 n y 
N9 C4 GTP sing 265 n y 
C8 N7 GTP doub 266 n y 
C8 H8 GTP sing 267 n n 
N7 C5 GTP sing 268 n y 
C5 C6 GTP sing 269 n n 
C5 C4 GTP doub 270 n y 
C6 O6 GTP doub 271 n n 
C6 N1 GTP sing 272 n n 
N1 C2 GTP sing 273 n n 
N1 HN1 GTP sing 274 n n 
C2 N2 GTP sing 275 n n 
C2 N3 GTP doub 276 n n 
N2 HN21 GTP sing 277 n n 
N2 HN22 GTP sing 278 n n 
N3 C4 GTP sing 279 n n 
#
_atom_sites.entry_id                     8IXB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 GTP W 1 501 13 GTP GTP . 
N 5 G2P W 1 502 501 G2P G2P . 
O 6 ATP l 1 401 1 ATP ATP . 
P 4 GTP Q 1 501 13 GTP GTP . 
Q 5 G2P Q 1 502 501 G2P G2P . 
R 6 ATP g 1 401 1 ATP ATP . 
S 4 GTP U 1 501 13 GTP GTP . 
T 5 G2P U 1 502 501 G2P G2P . 
U 6 ATP k 1 401 1 ATP ATP . 
V 4 GTP V 1 501 13 GTP GTP . 
W 5 G2P V 1 502 501 G2P G2P . 
X 6 ATP m 1 401 1 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . V 4 388.956 229.895 398.976 1 97.15 ? PG GTP 501 V 1 
HETATM 2 O O1G GTP . . . V 4 388.656 228.689 399.833 1 97.15 ? O1G GTP 501 V 1 
HETATM 3 O O2G GTP . . . V 4 390.337 229.748 398.392 1 97.15 ? O2G GTP 501 V 1 
HETATM 4 O O3G GTP . . . V 4 387.934 229.983 397.856 1 97.15 ? O3G GTP 501 V 1 
HETATM 5 O O3B GTP . . . V 4 388.934 231.201 399.914 1 97.15 ? O3B GTP 501 V 1 
HETATM 6 P PB GTP . . . V 4 387.605 231.65 400.697 1 97.15 ? PB GTP 501 V 1 
HETATM 7 O O1B GTP . . . V 4 386.633 232.298 399.741 1 97.15 ? O1B GTP 501 V 1 
HETATM 8 O O2B GTP . . . V 4 387.987 232.584 401.82 1 97.15 ? O2B GTP 501 V 1 
HETATM 9 O O3A GTP . . . V 4 386.986 230.288 401.293 1 97.15 ? O3A GTP 501 V 1 
HETATM 10 P PA GTP . . . V 4 385.572 230.317 402.061 1 97.15 ? PA GTP 501 V 1 
HETATM 11 O O1A GTP . . . V 4 384.73 231.452 401.531 1 97.15 ? O1A GTP 501 V 1 
HETATM 12 O O2A GTP . . . V 4 385.782 230.434 403.552 1 97.15 ? O2A GTP 501 V 1 
HETATM 13 O O5' GTP . . . V 4 384.869 228.923 401.666 1 97.15 ? O5' GTP 501 V 1 
HETATM 14 C C5' GTP . . . V 4 383.483 228.73 401.853 1 97.15 ? C5' GTP 501 V 1 
HETATM 15 C C4' GTP . . . V 4 383.167 228.424 403.312 1 97.15 ? C4' GTP 501 V 1 
HETATM 16 O O4' GTP . . . V 4 383.243 229.6 404.091 1 97.15 ? O4' GTP 501 V 1 
HETATM 17 C C3' GTP . . . V 4 381.756 227.893 403.492 1 97.15 ? C3' GTP 501 V 1 
HETATM 18 O O3' GTP . . . V 4 381.743 226.491 403.631 1 97.15 ? O3' GTP 501 V 1 
HETATM 19 C C2' GTP . . . V 4 381.226 228.569 404.741 1 97.15 ? C2' GTP 501 V 1 
HETATM 20 O O2' GTP . . . V 4 380.931 227.615 405.74 1 97.15 ? O2' GTP 501 V 1 
HETATM 21 C C1' GTP . . . V 4 382.315 229.56 405.158 1 97.15 ? C1' GTP 501 V 1 
HETATM 22 N N9 GTP . . . V 4 381.785 230.917 405.399 1 97.15 ? N9 GTP 501 V 1 
HETATM 23 C C8 GTP . . . V 4 382.262 232.071 404.833 1 97.15 ? C8 GTP 501 V 1 
HETATM 24 N N7 GTP . . . V 4 381.541 233.113 405.304 1 97.15 ? N7 GTP 501 V 1 
HETATM 25 C C5 GTP . . . V 4 380.625 232.646 406.179 1 97.15 ? C5 GTP 501 V 1 
HETATM 26 C C6 GTP . . . V 4 379.653 233.277 406.942 1 97.15 ? C6 GTP 501 V 1 
HETATM 27 O O6 GTP . . . V 4 379.518 234.497 406.884 1 97.15 ? O6 GTP 501 V 1 
HETATM 28 N N1 GTP . . . V 4 378.836 232.534 407.766 1 97.15 ? N1 GTP 501 V 1 
HETATM 29 C C2 GTP . . . V 4 378.999 231.165 407.828 1 97.15 ? C2 GTP 501 V 1 
HETATM 30 N N2 GTP . . . V 4 378.215 230.441 408.622 1 97.15 ? N2 GTP 501 V 1 
HETATM 31 N N3 GTP . . . V 4 379.968 230.542 407.067 1 97.15 ? N3 GTP 501 V 1 
HETATM 32 C C4 GTP . . . V 4 380.773 231.271 406.258 1 97.15 ? C4 GTP 501 V 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    59 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           32 
#