data_8IXV # _model_server_result.job_id Qv1_11Fhf2TaDjCUc-rxwg _model_server_result.datetime_utc '2024-11-13 05:02:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ixv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 8IXV # _exptl.entry_id 8IXV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.009 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[bis(chloranyl)-[[(E)-3-methyl-4-oxidanyl-but-2-enoxy]-oxidanyl-phosphoryl]methyl]phosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IXV _cell.length_a 45.774 _cell.length_b 61.944 _cell.length_c 75.405 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IXV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H12 Cl2 O7 P2' _chem_comp.formula_weight 329.009 _chem_comp.id RZO _chem_comp.mon_nstd_flag . _chem_comp.name '[bis(chloranyl)-[[(E)-3-methyl-4-oxidanyl-but-2-enoxy]-oxidanyl-phosphoryl]methyl]phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CLP CAK RZO sing 302 n n OAI PAH RZO doub 303 n n CAG CAC RZO sing 304 n n CLQ CAK RZO sing 305 n n CAK PAH RZO sing 306 n n CAK PAL RZO sing 307 n n PAH OAF RZO sing 308 n n PAH OAJ RZO sing 309 n n CAE OAF RZO sing 310 n n CAE CAD RZO sing 311 n n CAC CAD RZO doub 312 e n CAC CAB RZO sing 313 n n OAM PAL RZO doub 314 n n PAL OAO RZO sing 315 n n PAL OAN RZO sing 316 n n CAB OAA RZO sing 317 n n CAB H1 RZO sing 318 n n CAB H2 RZO sing 319 n n CAD H3 RZO sing 320 n n CAE H4 RZO sing 321 n n CAE H5 RZO sing 322 n n CAG H6 RZO sing 323 n n CAG H7 RZO sing 324 n n CAG H8 RZO sing 325 n n OAA H9 RZO sing 326 n n OAJ H10 RZO sing 327 n n OAN H11 RZO sing 328 n n OAO H12 RZO sing 329 n n # _atom_sites.entry_id 8IXV _atom_sites.fract_transf_matrix[1][1] 0.021846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 501 2 PEG PEG . C 3 EDO A 1 502 1 EDO EDO . D 4 RZO A 1 503 1 RZO DRG . E 5 HOH A 1 601 220 HOH HOH . E 5 HOH A 2 602 203 HOH HOH . E 5 HOH A 3 603 123 HOH HOH . E 5 HOH A 4 604 248 HOH HOH . E 5 HOH A 5 605 211 HOH HOH . E 5 HOH A 6 606 83 HOH HOH . E 5 HOH A 7 607 101 HOH HOH . E 5 HOH A 8 608 22 HOH HOH . E 5 HOH A 9 609 102 HOH HOH . E 5 HOH A 10 610 116 HOH HOH . E 5 HOH A 11 611 69 HOH HOH . E 5 HOH A 12 612 137 HOH HOH . E 5 HOH A 13 613 41 HOH HOH . E 5 HOH A 14 614 26 HOH HOH . E 5 HOH A 15 615 166 HOH HOH . E 5 HOH A 16 616 4 HOH HOH . E 5 HOH A 17 617 141 HOH HOH . E 5 HOH A 18 618 80 HOH HOH . E 5 HOH A 19 619 223 HOH HOH . E 5 HOH A 20 620 183 HOH HOH . E 5 HOH A 21 621 15 HOH HOH . E 5 HOH A 22 622 20 HOH HOH . E 5 HOH A 23 623 28 HOH HOH . E 5 HOH A 24 624 260 HOH HOH . E 5 HOH A 25 625 63 HOH HOH . E 5 HOH A 26 626 218 HOH HOH . E 5 HOH A 27 627 89 HOH HOH . E 5 HOH A 28 628 162 HOH HOH . E 5 HOH A 29 629 25 HOH HOH . E 5 HOH A 30 630 3 HOH HOH . E 5 HOH A 31 631 33 HOH HOH . E 5 HOH A 32 632 38 HOH HOH . E 5 HOH A 33 633 68 HOH HOH . E 5 HOH A 34 634 143 HOH HOH . E 5 HOH A 35 635 158 HOH HOH . E 5 HOH A 36 636 53 HOH HOH . E 5 HOH A 37 637 212 HOH HOH . E 5 HOH A 38 638 112 HOH HOH . E 5 HOH A 39 639 98 HOH HOH . E 5 HOH A 40 640 76 HOH HOH . E 5 HOH A 41 641 159 HOH HOH . E 5 HOH A 42 642 107 HOH HOH . E 5 HOH A 43 643 133 HOH HOH . E 5 HOH A 44 644 12 HOH HOH . E 5 HOH A 45 645 2 HOH HOH . E 5 HOH A 46 646 21 HOH HOH . E 5 HOH A 47 647 35 HOH HOH . E 5 HOH A 48 648 120 HOH HOH . E 5 HOH A 49 649 70 HOH HOH . E 5 HOH A 50 650 43 HOH HOH . E 5 HOH A 51 651 30 HOH HOH . E 5 HOH A 52 652 245 HOH HOH . E 5 HOH A 53 653 14 HOH HOH . E 5 HOH A 54 654 247 HOH HOH . E 5 HOH A 55 655 104 HOH HOH . E 5 HOH A 56 656 77 HOH HOH . E 5 HOH A 57 657 37 HOH HOH . E 5 HOH A 58 658 252 HOH HOH . E 5 HOH A 59 659 134 HOH HOH . E 5 HOH A 60 660 46 HOH HOH . E 5 HOH A 61 661 17 HOH HOH . E 5 HOH A 62 662 84 HOH HOH . E 5 HOH A 63 663 16 HOH HOH . E 5 HOH A 64 664 126 HOH HOH . E 5 HOH A 65 665 111 HOH HOH . E 5 HOH A 66 666 36 HOH HOH . E 5 HOH A 67 667 125 HOH HOH . E 5 HOH A 68 668 55 HOH HOH . E 5 HOH A 69 669 5 HOH HOH . E 5 HOH A 70 670 64 HOH HOH . E 5 HOH A 71 671 130 HOH HOH . E 5 HOH A 72 672 78 HOH HOH . E 5 HOH A 73 673 139 HOH HOH . E 5 HOH A 74 674 115 HOH HOH . E 5 HOH A 75 675 128 HOH HOH . E 5 HOH A 76 676 7 HOH HOH . E 5 HOH A 77 677 10 HOH HOH . E 5 HOH A 78 678 54 HOH HOH . E 5 HOH A 79 679 9 HOH HOH . E 5 HOH A 80 680 249 HOH HOH . E 5 HOH A 81 681 82 HOH HOH . E 5 HOH A 82 682 79 HOH HOH . E 5 HOH A 83 683 109 HOH HOH . E 5 HOH A 84 684 48 HOH HOH . E 5 HOH A 85 685 246 HOH HOH . E 5 HOH A 86 686 132 HOH HOH . E 5 HOH A 87 687 237 HOH HOH . E 5 HOH A 88 688 239 HOH HOH . E 5 HOH A 89 689 215 HOH HOH . E 5 HOH A 90 690 262 HOH HOH . E 5 HOH A 91 691 39 HOH HOH . E 5 HOH A 92 692 31 HOH HOH . E 5 HOH A 93 693 163 HOH HOH . E 5 HOH A 94 694 81 HOH HOH . E 5 HOH A 95 695 58 HOH HOH . E 5 HOH A 96 696 258 HOH HOH . E 5 HOH A 97 697 186 HOH HOH . E 5 HOH A 98 698 91 HOH HOH . E 5 HOH A 99 699 156 HOH HOH . E 5 HOH A 100 700 182 HOH HOH . E 5 HOH A 101 701 122 HOH HOH . E 5 HOH A 102 702 42 HOH HOH . E 5 HOH A 103 703 11 HOH HOH . E 5 HOH A 104 704 19 HOH HOH . E 5 HOH A 105 705 44 HOH HOH . E 5 HOH A 106 706 232 HOH HOH . E 5 HOH A 107 707 71 HOH HOH . E 5 HOH A 108 708 118 HOH HOH . E 5 HOH A 109 709 185 HOH HOH . E 5 HOH A 110 710 27 HOH HOH . E 5 HOH A 111 711 253 HOH HOH . E 5 HOH A 112 712 119 HOH HOH . E 5 HOH A 113 713 18 HOH HOH . E 5 HOH A 114 714 56 HOH HOH . E 5 HOH A 115 715 180 HOH HOH . E 5 HOH A 116 716 85 HOH HOH . E 5 HOH A 117 717 94 HOH HOH . E 5 HOH A 118 718 189 HOH HOH . E 5 HOH A 119 719 1 HOH HOH . E 5 HOH A 120 720 8 HOH HOH . E 5 HOH A 121 721 59 HOH HOH . E 5 HOH A 122 722 192 HOH HOH . E 5 HOH A 123 723 233 HOH HOH . E 5 HOH A 124 724 140 HOH HOH . E 5 HOH A 125 725 138 HOH HOH . E 5 HOH A 126 726 261 HOH HOH . E 5 HOH A 127 727 121 HOH HOH . E 5 HOH A 128 728 234 HOH HOH . E 5 HOH A 129 729 198 HOH HOH . E 5 HOH A 130 730 103 HOH HOH . E 5 HOH A 131 731 40 HOH HOH . E 5 HOH A 132 732 243 HOH HOH . E 5 HOH A 133 733 97 HOH HOH . E 5 HOH A 134 734 6 HOH HOH . E 5 HOH A 135 735 160 HOH HOH . E 5 HOH A 136 736 142 HOH HOH . E 5 HOH A 137 737 57 HOH HOH . E 5 HOH A 138 738 117 HOH HOH . E 5 HOH A 139 739 264 HOH HOH . E 5 HOH A 140 740 93 HOH HOH . E 5 HOH A 141 741 86 HOH HOH . E 5 HOH A 142 742 61 HOH HOH . E 5 HOH A 143 743 49 HOH HOH . E 5 HOH A 144 744 238 HOH HOH . E 5 HOH A 145 745 32 HOH HOH . E 5 HOH A 146 746 66 HOH HOH . E 5 HOH A 147 747 45 HOH HOH . E 5 HOH A 148 748 50 HOH HOH . E 5 HOH A 149 749 96 HOH HOH . E 5 HOH A 150 750 65 HOH HOH . E 5 HOH A 151 751 62 HOH HOH . E 5 HOH A 152 752 73 HOH HOH . E 5 HOH A 153 753 197 HOH HOH . E 5 HOH A 154 754 124 HOH HOH . E 5 HOH A 155 755 29 HOH HOH . E 5 HOH A 156 756 72 HOH HOH . E 5 HOH A 157 757 221 HOH HOH . E 5 HOH A 158 758 51 HOH HOH . E 5 HOH A 159 759 228 HOH HOH . E 5 HOH A 160 760 47 HOH HOH . E 5 HOH A 161 761 23 HOH HOH . E 5 HOH A 162 762 231 HOH HOH . E 5 HOH A 163 763 110 HOH HOH . E 5 HOH A 164 764 95 HOH HOH . E 5 HOH A 165 765 257 HOH HOH . E 5 HOH A 166 766 196 HOH HOH . E 5 HOH A 167 767 13 HOH HOH . E 5 HOH A 168 768 229 HOH HOH . E 5 HOH A 169 769 92 HOH HOH . E 5 HOH A 170 770 67 HOH HOH . E 5 HOH A 171 771 188 HOH HOH . E 5 HOH A 172 772 113 HOH HOH . E 5 HOH A 173 773 207 HOH HOH . E 5 HOH A 174 774 34 HOH HOH . E 5 HOH A 175 775 210 HOH HOH . E 5 HOH A 176 776 164 HOH HOH . E 5 HOH A 177 777 172 HOH HOH . E 5 HOH A 178 778 87 HOH HOH . E 5 HOH A 179 779 108 HOH HOH . E 5 HOH A 180 780 193 HOH HOH . E 5 HOH A 181 781 216 HOH HOH . E 5 HOH A 182 782 241 HOH HOH . E 5 HOH A 183 783 254 HOH HOH . E 5 HOH A 184 784 236 HOH HOH . E 5 HOH A 185 785 242 HOH HOH . E 5 HOH A 186 786 178 HOH HOH . E 5 HOH A 187 787 227 HOH HOH . E 5 HOH A 188 788 184 HOH HOH . E 5 HOH A 189 789 171 HOH HOH . E 5 HOH A 190 790 99 HOH HOH . E 5 HOH A 191 791 219 HOH HOH . E 5 HOH A 192 792 170 HOH HOH . E 5 HOH A 193 793 206 HOH HOH . E 5 HOH A 194 794 255 HOH HOH . E 5 HOH A 195 795 265 HOH HOH . E 5 HOH A 196 796 144 HOH HOH . E 5 HOH A 197 797 100 HOH HOH . E 5 HOH A 198 798 60 HOH HOH . E 5 HOH A 199 799 165 HOH HOH . E 5 HOH A 200 800 175 HOH HOH . E 5 HOH A 201 801 127 HOH HOH . E 5 HOH A 202 802 114 HOH HOH . E 5 HOH A 203 803 187 HOH HOH . E 5 HOH A 204 804 225 HOH HOH . E 5 HOH A 205 805 201 HOH HOH . E 5 HOH A 206 806 157 HOH HOH . E 5 HOH A 207 807 135 HOH HOH . E 5 HOH A 208 808 136 HOH HOH . E 5 HOH A 209 809 256 HOH HOH . E 5 HOH A 210 810 154 HOH HOH . E 5 HOH A 211 811 106 HOH HOH . E 5 HOH A 212 812 263 HOH HOH . E 5 HOH A 213 813 222 HOH HOH . E 5 HOH A 214 814 150 HOH HOH . E 5 HOH A 215 815 131 HOH HOH . E 5 HOH A 216 816 90 HOH HOH . E 5 HOH A 217 817 259 HOH HOH . E 5 HOH A 218 818 74 HOH HOH . E 5 HOH A 219 819 235 HOH HOH . E 5 HOH A 220 820 151 HOH HOH . E 5 HOH A 221 821 208 HOH HOH . E 5 HOH A 222 822 105 HOH HOH . E 5 HOH A 223 823 224 HOH HOH . E 5 HOH A 224 824 244 HOH HOH . E 5 HOH A 225 825 194 HOH HOH . E 5 HOH A 226 826 52 HOH HOH . E 5 HOH A 227 827 251 HOH HOH . E 5 HOH A 228 828 179 HOH HOH . E 5 HOH A 229 829 129 HOH HOH . E 5 HOH A 230 830 200 HOH HOH . E 5 HOH A 231 831 149 HOH HOH . E 5 HOH A 232 832 191 HOH HOH . E 5 HOH A 233 833 181 HOH HOH . E 5 HOH A 234 834 24 HOH HOH . E 5 HOH A 235 835 153 HOH HOH . E 5 HOH A 236 836 146 HOH HOH . E 5 HOH A 237 837 75 HOH HOH . E 5 HOH A 238 838 205 HOH HOH . E 5 HOH A 239 839 190 HOH HOH . E 5 HOH A 240 840 217 HOH HOH . E 5 HOH A 241 841 148 HOH HOH . E 5 HOH A 242 842 214 HOH HOH . E 5 HOH A 243 843 169 HOH HOH . E 5 HOH A 244 844 173 HOH HOH . E 5 HOH A 245 845 168 HOH HOH . E 5 HOH A 246 846 152 HOH HOH . E 5 HOH A 247 847 240 HOH HOH . E 5 HOH A 248 848 174 HOH HOH . E 5 HOH A 249 849 167 HOH HOH . E 5 HOH A 250 850 230 HOH HOH . E 5 HOH A 251 851 204 HOH HOH . E 5 HOH A 252 852 155 HOH HOH . E 5 HOH A 253 853 161 HOH HOH . E 5 HOH A 254 854 195 HOH HOH . E 5 HOH A 255 855 202 HOH HOH . E 5 HOH A 256 856 213 HOH HOH . E 5 HOH A 257 857 145 HOH HOH . E 5 HOH A 258 858 177 HOH HOH . E 5 HOH A 259 859 88 HOH HOH . E 5 HOH A 260 860 209 HOH HOH . E 5 HOH A 261 861 176 HOH HOH . E 5 HOH A 262 862 147 HOH HOH . E 5 HOH A 263 863 250 HOH HOH . E 5 HOH A 264 864 226 HOH HOH . E 5 HOH A 265 865 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB RZO . . . D 4 -11.987 -3.968 0.897 1 20.12 ? CAB RZO 503 A 1 HETATM 2 C CAC RZO . . . D 4 -12.742 -4.835 -0.101 1 23.38 ? CAC RZO 503 A 1 HETATM 3 C CAD RZO . . . D 4 -13.489 -6.048 0.404 1 19.33 ? CAD RZO 503 A 1 HETATM 4 C CAE RZO . . . D 4 -14.242 -6.906 -0.635 1 22.43 ? CAE RZO 503 A 1 HETATM 5 C CAG RZO . . . D 4 -12.814 -4.432 -1.575 1 23.75 ? CAG RZO 503 A 1 HETATM 6 C CAK RZO . . . D 4 -14.735 -10.629 -1.054 1 18 ? CAK RZO 503 A 1 HETATM 7 O OAA RZO . . . D 4 -12.109 -4.51 2.211 1 16.73 ? OAA RZO 503 A 1 HETATM 8 O OAF RZO . . . D 4 -13.907 -8.174 -0.164 1 19.99 ? OAF RZO 503 A 1 HETATM 9 O OAI RZO . . . D 4 -12.973 -9.045 -2.356 1 20.41 ? OAI RZO 503 A 1 HETATM 10 O OAJ RZO . . . D 4 -12.184 -10.091 -0.122 1 25.8 ? OAJ RZO 503 A 1 HETATM 11 O OAM RZO . . . D 4 -16.543 -12.044 0.276 1 16.58 ? OAM RZO 503 A 1 HETATM 12 O OAN RZO . . . D 4 -14.836 -10.896 1.729 1 16.23 ? OAN RZO 503 A 1 HETATM 13 O OAO RZO . . . D 4 -16.768 -9.531 0.618 1 18.64 ? OAO RZO 503 A 1 HETATM 14 P PAH RZO . . . D 4 -13.355 -9.409 -0.956 1 19.96 ? PAH RZO 503 A 1 HETATM 15 P PAL RZO . . . D 4 -15.774 -10.775 0.479 1 16.92 ? PAL RZO 503 A 1 HETATM 16 CL CLP RZO . . . D 4 -15.809 -10.162 -2.37 1 20.72 ? CLP RZO 503 A 1 HETATM 17 CL CLQ RZO . . . D 4 -13.962 -12.201 -1.29 1 25.58 ? CLQ RZO 503 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #