data_8IY2
#
_model_server_result.job_id            D8FsiVo46BDHvXoMggWfDw 
_model_server_result.datetime_utc      '2024-11-23 23:53:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8iy2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":201}' 
#
_entry.id    8IY2 
#
_exptl.entry_id    8IY2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8IY2 
_cell.length_a            103.427 
_cell.length_b            103.427 
_cell.length_c            101.487 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IY2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
? hexameric 6 author_defined_assembly 2 
? hexameric 6 author_defined_assembly 3 
? hexameric 6 author_defined_assembly 4 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,I,J,K,L,M,N,TA 1 1 
A,G,H,I,J,K,L,M,N,TA 1 2 
A,G,H,I,J,K,L,M,N,TA 1 4 
A,G,H,I,J,K,L,M,N,TA 1 6 
A,G,H,I,J,K,L,M,N,TA 1 8 
A,G,H,I,J,K,L,M,N,TA 1 10 
B,O,P,Q,R,S,T,U,UA 2 1 
B,O,P,Q,R,S,T,U,UA 2 2 
B,O,P,Q,R,S,T,U,UA 2 4 
B,O,P,Q,R,S,T,U,UA 2 7 
B,O,P,Q,R,S,T,U,UA 2 9 
B,O,P,Q,R,S,T,U,UA 2 11 
C,D,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,VA,WA 3 1 
C,D,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,VA,WA 3 3 
C,D,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,VA,WA 3 5 
E,F,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,XA 4 1 
E,F,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,XA 4 3 
E,F,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,XA 4 5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -51.7135 -89.570409 0 
4 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 51.7135 -89.570409 0 
6 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 101.487 
7 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
8 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 101.487 
9 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
10 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 101.487 
11 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 O N N 
? 2 P N N 
? 2 V N N 
? 2 W N N 
? 2 BA N N 
? 2 CA N N 
? 2 HA N N 
? 2 IA N N 
? 2 NA N N 
? 2 OA N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 149 n n 
C1 C2 EDO sing 150 n n 
C1 H11 EDO sing 151 n n 
C1 H12 EDO sing 152 n n 
O1 HO1 EDO sing 153 n n 
C2 O2 EDO sing 154 n n 
C2 H21 EDO sing 155 n n 
C2 H22 EDO sing 156 n n 
O2 HO2 EDO sing 157 n n 
#
_atom_sites.entry_id                     8IY2 
_atom_sites.fract_transf_matrix[1][1]    0.009669 
_atom_sites.fract_transf_matrix[1][2]    0.005582 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011164 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009853 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 EDO A 1 201 201 EDO EDO . 
H 2 EDO A 1 202 302 EDO EDO . 
I 2 EDO A 1 203 301 EDO EDO . 
J 3 3AM A 1 204 102 3AM AAA . 
K 3 3AM A 1 205 102 3AM AAA . 
L 3 3AM A 1 206 102 3AM AAA . 
M 4 3GP A 1 207 101 3GP 4BW . 
N 3 3AM A 1 208 101 3AM 4BW . 
O 2 EDO B 1 201 201 EDO EDO . 
P 2 EDO B 1 202 302 EDO EDO . 
Q 3 3AM B 1 203 102 3AM AAA . 
R 3 3AM B 1 204 102 3AM AAA . 
S 3 3AM B 1 205 102 3AM AAA . 
T 4 3GP B 1 206 101 3GP 4BW . 
U 3 3AM B 1 207 101 3AM 4BW . 
V 2 EDO C 1 201 201 EDO EDO . 
W 2 EDO C 1 202 302 EDO EDO . 
X 3 3AM C 1 203 101 3AM AAA . 
Y 3 3AM C 1 204 101 3AM AAA . 
Z 3 3AM C 1 205 101 3AM AAA . 
AA 4 3GP C 1 206 101 3GP 4BW . 
BA 2 EDO D 1 201 201 EDO EDO . 
CA 2 EDO D 1 202 302 EDO EDO . 
DA 3 3AM D 1 203 102 3AM AAA . 
EA 3 3AM D 1 204 102 3AM AAA . 
FA 3 3AM D 1 205 102 3AM AAA . 
GA 3 3AM D 1 206 101 3AM 4BW . 
HA 2 EDO E 1 201 201 EDO EDO . 
IA 2 EDO E 1 202 302 EDO EDO . 
JA 3 3AM E 1 203 102 3AM AAA . 
KA 3 3AM E 1 204 102 3AM AAA . 
LA 3 3AM E 1 205 102 3AM AAA . 
MA 4 3GP E 1 206 101 3GP 4BW . 
NA 2 EDO F 1 201 201 EDO EDO . 
OA 2 EDO F 1 202 302 EDO EDO . 
PA 3 3AM F 1 203 101 3AM AAA . 
QA 3 3AM F 1 204 101 3AM AAA . 
RA 3 3AM F 1 205 101 3AM AAA . 
SA 3 3AM F 1 206 101 3AM 4BW . 
TA 5 HOH A 1 301 1 HOH HOH . 
TA 5 HOH A 2 302 3 HOH HOH . 
TA 5 HOH A 3 303 25 HOH HOH . 
TA 5 HOH A 4 304 4 HOH HOH . 
TA 5 HOH A 5 305 5 HOH HOH . 
TA 5 HOH A 6 306 8 HOH HOH . 
TA 5 HOH A 7 307 7 HOH HOH . 
TA 5 HOH A 8 308 17 HOH HOH . 
TA 5 HOH A 9 309 12 HOH HOH . 
TA 5 HOH A 10 310 18 HOH HOH . 
TA 5 HOH A 11 311 20 HOH HOH . 
TA 5 HOH A 12 312 19 HOH HOH . 
TA 5 HOH A 13 313 16 HOH HOH . 
UA 5 HOH B 1 301 21 HOH HOH . 
UA 5 HOH B 2 302 27 HOH HOH . 
UA 5 HOH B 3 303 15 HOH HOH . 
UA 5 HOH B 4 304 26 HOH HOH . 
VA 5 HOH C 1 301 14 HOH HOH . 
WA 5 HOH D 1 301 6 HOH HOH . 
WA 5 HOH D 2 302 13 HOH HOH . 
WA 5 HOH D 3 303 11 HOH HOH . 
WA 5 HOH D 4 304 23 HOH HOH . 
WA 5 HOH D 5 305 24 HOH HOH . 
WA 5 HOH D 6 306 9 HOH HOH . 
XA 5 HOH F 1 301 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . V 2 10.604 -63.713 18.205 1 42.55 ? C1 EDO 201 C 1 
HETATM 2 O O1 EDO . . . V 2 9.521 -64.033 19.081 1 49.48 ? O1 EDO 201 C 1 
HETATM 3 C C2 EDO . . . V 2 11.022 -64.994 17.518 1 43.19 ? C2 EDO 201 C 1 
HETATM 4 O O2 EDO . . . V 2 12.146 -64.671 16.704 1 47.43 ? O2 EDO 201 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#