data_8IY2 # _model_server_result.job_id 2FOGl7Rumm3zv_PEfzouPQ _model_server_result.datetime_utc '2024-11-23 23:18:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iy2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":206}' # _entry.id 8IY2 # _exptl.entry_id 8IY2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-3'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8IY2 _cell.length_a 103.427 _cell.length_b 103.427 _cell.length_c 101.487 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IY2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 ? hexameric 6 author_defined_assembly 2 ? hexameric 6 author_defined_assembly 3 ? hexameric 6 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,I,J,K,L,M,N,TA 1 1 A,G,H,I,J,K,L,M,N,TA 1 2 A,G,H,I,J,K,L,M,N,TA 1 4 A,G,H,I,J,K,L,M,N,TA 1 6 A,G,H,I,J,K,L,M,N,TA 1 8 A,G,H,I,J,K,L,M,N,TA 1 10 B,O,P,Q,R,S,T,U,UA 2 1 B,O,P,Q,R,S,T,U,UA 2 2 B,O,P,Q,R,S,T,U,UA 2 4 B,O,P,Q,R,S,T,U,UA 2 7 B,O,P,Q,R,S,T,U,UA 2 9 B,O,P,Q,R,S,T,U,UA 2 11 C,D,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,VA,WA 3 1 C,D,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,VA,WA 3 3 C,D,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,VA,WA 3 5 E,F,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,XA 4 1 E,F,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,XA 4 3 E,F,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,XA 4 5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -51.7135 -89.570409 0 4 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 51.7135 -89.570409 0 6 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 101.487 7 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 101.487 9 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 10 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 101.487 11 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 T N N ? 4 AA N N ? 4 MA N N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 3GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-3'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 3GP doub 40 n n P O2P 3GP sing 41 n n P O3P 3GP sing 42 n n P O3' 3GP sing 43 n n O2P HOP2 3GP sing 44 n n O3P HOP3 3GP sing 45 n n O5' C5' 3GP sing 46 n n O5' HO5' 3GP sing 47 n n C5' C4' 3GP sing 48 n n C5' "H5'1" 3GP sing 49 n n C5' "H5'2" 3GP sing 50 n n C4' O4' 3GP sing 51 n n C4' C3' 3GP sing 52 n n C4' H4' 3GP sing 53 n n O4' C1' 3GP sing 54 n n C3' O3' 3GP sing 55 n n C3' C2' 3GP sing 56 n n C3' H3' 3GP sing 57 n n C2' O2' 3GP sing 58 n n C2' C1' 3GP sing 59 n n C2' H2' 3GP sing 60 n n O2' HO2' 3GP sing 61 n n C1' N9 3GP sing 62 n n C1' H1' 3GP sing 63 n n N9 C8 3GP sing 64 n y N9 C4 3GP sing 65 n y C8 N7 3GP doub 66 n y C8 H8 3GP sing 67 n n N7 C5 3GP sing 68 n y C5 C6 3GP sing 69 n n C5 C4 3GP doub 70 n y C6 O6 3GP doub 71 n n C6 N1 3GP sing 72 n n N1 C2 3GP sing 73 n n N1 HN1 3GP sing 74 n n C2 N2 3GP sing 75 n n C2 N3 3GP doub 76 n n N2 HN21 3GP sing 77 n n N2 HN22 3GP sing 78 n n N3 C4 3GP sing 79 n n # _atom_sites.entry_id 8IY2 _atom_sites.fract_transf_matrix[1][1] 0.009669 _atom_sites.fract_transf_matrix[1][2] 0.005582 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 EDO A 1 201 201 EDO EDO . H 2 EDO A 1 202 302 EDO EDO . I 2 EDO A 1 203 301 EDO EDO . J 3 3AM A 1 204 102 3AM AAA . K 3 3AM A 1 205 102 3AM AAA . L 3 3AM A 1 206 102 3AM AAA . M 4 3GP A 1 207 101 3GP 4BW . N 3 3AM A 1 208 101 3AM 4BW . O 2 EDO B 1 201 201 EDO EDO . P 2 EDO B 1 202 302 EDO EDO . Q 3 3AM B 1 203 102 3AM AAA . R 3 3AM B 1 204 102 3AM AAA . S 3 3AM B 1 205 102 3AM AAA . T 4 3GP B 1 206 101 3GP 4BW . U 3 3AM B 1 207 101 3AM 4BW . V 2 EDO C 1 201 201 EDO EDO . W 2 EDO C 1 202 302 EDO EDO . X 3 3AM C 1 203 101 3AM AAA . Y 3 3AM C 1 204 101 3AM AAA . Z 3 3AM C 1 205 101 3AM AAA . AA 4 3GP C 1 206 101 3GP 4BW . BA 2 EDO D 1 201 201 EDO EDO . CA 2 EDO D 1 202 302 EDO EDO . DA 3 3AM D 1 203 102 3AM AAA . EA 3 3AM D 1 204 102 3AM AAA . FA 3 3AM D 1 205 102 3AM AAA . GA 3 3AM D 1 206 101 3AM 4BW . HA 2 EDO E 1 201 201 EDO EDO . IA 2 EDO E 1 202 302 EDO EDO . JA 3 3AM E 1 203 102 3AM AAA . KA 3 3AM E 1 204 102 3AM AAA . LA 3 3AM E 1 205 102 3AM AAA . MA 4 3GP E 1 206 101 3GP 4BW . NA 2 EDO F 1 201 201 EDO EDO . OA 2 EDO F 1 202 302 EDO EDO . PA 3 3AM F 1 203 101 3AM AAA . QA 3 3AM F 1 204 101 3AM AAA . RA 3 3AM F 1 205 101 3AM AAA . SA 3 3AM F 1 206 101 3AM 4BW . TA 5 HOH A 1 301 1 HOH HOH . TA 5 HOH A 2 302 3 HOH HOH . TA 5 HOH A 3 303 25 HOH HOH . TA 5 HOH A 4 304 4 HOH HOH . TA 5 HOH A 5 305 5 HOH HOH . TA 5 HOH A 6 306 8 HOH HOH . TA 5 HOH A 7 307 7 HOH HOH . TA 5 HOH A 8 308 17 HOH HOH . TA 5 HOH A 9 309 12 HOH HOH . TA 5 HOH A 10 310 18 HOH HOH . TA 5 HOH A 11 311 20 HOH HOH . TA 5 HOH A 12 312 19 HOH HOH . TA 5 HOH A 13 313 16 HOH HOH . UA 5 HOH B 1 301 21 HOH HOH . UA 5 HOH B 2 302 27 HOH HOH . UA 5 HOH B 3 303 15 HOH HOH . UA 5 HOH B 4 304 26 HOH HOH . VA 5 HOH C 1 301 14 HOH HOH . WA 5 HOH D 1 301 6 HOH HOH . WA 5 HOH D 2 302 13 HOH HOH . WA 5 HOH D 3 303 11 HOH HOH . WA 5 HOH D 4 304 23 HOH HOH . WA 5 HOH D 5 305 24 HOH HOH . WA 5 HOH D 6 306 9 HOH HOH . XA 5 HOH F 1 301 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3GP . . . AA 4 -4.457 -43.189 35.772 1 45.22 ? P 3GP 206 C 1 HETATM 2 O O2P 3GP . . . AA 4 -5.171 -44.465 35.486 1 40.65 ? O2P 3GP 206 C 1 HETATM 3 O O3P 3GP . . . AA 4 -5.252 -42.064 36.341 1 49.92 ? O3P 3GP 206 C 1 HETATM 4 O O5' 3GP . . . AA 4 0.51 -42.353 36.083 1 42.61 ? O5' 3GP 206 C 1 HETATM 5 C C5' 3GP . . . AA 4 -0.022 -43.48 36.814 1 40.29 ? C5' 3GP 206 C 1 HETATM 6 C C4' 3GP . . . AA 4 -1.084 -43.007 37.776 1 41.55 ? C4' 3GP 206 C 1 HETATM 7 O O4' 3GP . . . AA 4 -0.6 -41.91 38.568 1 44.01 ? O4' 3GP 206 C 1 HETATM 8 C C3' 3GP . . . AA 4 -2.361 -42.455 37.167 1 43.46 ? C3' 3GP 206 C 1 HETATM 9 O O3' 3GP . . . AA 4 -3.17 -43.509 36.673 1 42.7 ? O3' 3GP 206 C 1 HETATM 10 C C2' 3GP . . . AA 4 -2.983 -41.809 38.398 1 46.56 ? C2' 3GP 206 C 1 HETATM 11 O O2' 3GP . . . AA 4 -3.51 -42.862 39.188 1 44.31 ? O2' 3GP 206 C 1 HETATM 12 C C1' 3GP . . . AA 4 -1.739 -41.229 39.085 1 46.79 ? C1' 3GP 206 C 1 HETATM 13 N N9 3GP . . . AA 4 -1.554 -39.798 38.847 1 48.64 ? N9 3GP 206 C 1 HETATM 14 C C8 3GP . . . AA 4 -0.908 -39.195 37.779 1 51.57 ? C8 3GP 206 C 1 HETATM 15 N N7 3GP . . . AA 4 -0.926 -37.873 37.856 1 53.63 ? N7 3GP 206 C 1 HETATM 16 C C5 3GP . . . AA 4 -1.615 -37.6 39.02 1 52.57 ? C5 3GP 206 C 1 HETATM 17 C C6 3GP . . . AA 4 -1.948 -36.357 39.629 1 59.34 ? C6 3GP 206 C 1 HETATM 18 O O6 3GP . . . AA 4 -1.689 -35.21 39.233 1 62.52 ? O6 3GP 206 C 1 HETATM 19 N N1 3GP . . . AA 4 -2.658 -36.551 40.814 1 53.94 ? N1 3GP 206 C 1 HETATM 20 C C2 3GP . . . AA 4 -3.003 -37.772 41.343 1 54.04 ? C2 3GP 206 C 1 HETATM 21 N N2 3GP . . . AA 4 -3.687 -37.756 42.492 1 55.76 ? N2 3GP 206 C 1 HETATM 22 N N3 3GP . . . AA 4 -2.697 -38.934 40.78 1 51.13 ? N3 3GP 206 C 1 HETATM 23 C C4 3GP . . . AA 4 -2.014 -38.77 39.637 1 52.55 ? C4 3GP 206 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 23 #