data_8IY2
#
_model_server_result.job_id            BHHA3D8DT7YpLvy-FZxjbw 
_model_server_result.datetime_utc      '2024-10-15 00:19:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8iy2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"MA","auth_seq_id":206}' 
#
_entry.id    8IY2 
#
_exptl.entry_id    8IY2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-3'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8IY2 
_cell.length_a            103.427 
_cell.length_b            103.427 
_cell.length_c            101.487 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IY2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
? hexameric 6 author_defined_assembly 2 
? hexameric 6 author_defined_assembly 3 
? hexameric 6 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,I,J,K,L,M,N,TA 1 1 
A,G,H,I,J,K,L,M,N,TA 1 2 
A,G,H,I,J,K,L,M,N,TA 1 4 
A,G,H,I,J,K,L,M,N,TA 1 6 
A,G,H,I,J,K,L,M,N,TA 1 8 
A,G,H,I,J,K,L,M,N,TA 1 10 
B,O,P,Q,R,S,T,U,UA 2 1 
B,O,P,Q,R,S,T,U,UA 2 2 
B,O,P,Q,R,S,T,U,UA 2 4 
B,O,P,Q,R,S,T,U,UA 2 7 
B,O,P,Q,R,S,T,U,UA 2 9 
B,O,P,Q,R,S,T,U,UA 2 11 
C,D,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,VA,WA 3 1 
C,D,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,VA,WA 3 3 
C,D,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,VA,WA 3 5 
E,F,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,XA 4 1 
E,F,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,XA 4 3 
E,F,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,XA 4 5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -51.7135 -89.570409 0 
4 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 51.7135 -89.570409 0 
6 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 101.487 
7 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
8 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 101.487 
9 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
10 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 101.487 
11 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 T N N 
? 4 AA N N 
? 4 MA N N 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                3GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-3'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 3GP doub 40 n n 
P O2P 3GP sing 41 n n 
P O3P 3GP sing 42 n n 
P O3' 3GP sing 43 n n 
O2P HOP2 3GP sing 44 n n 
O3P HOP3 3GP sing 45 n n 
O5' C5' 3GP sing 46 n n 
O5' HO5' 3GP sing 47 n n 
C5' C4' 3GP sing 48 n n 
C5' "H5'1" 3GP sing 49 n n 
C5' "H5'2" 3GP sing 50 n n 
C4' O4' 3GP sing 51 n n 
C4' C3' 3GP sing 52 n n 
C4' H4' 3GP sing 53 n n 
O4' C1' 3GP sing 54 n n 
C3' O3' 3GP sing 55 n n 
C3' C2' 3GP sing 56 n n 
C3' H3' 3GP sing 57 n n 
C2' O2' 3GP sing 58 n n 
C2' C1' 3GP sing 59 n n 
C2' H2' 3GP sing 60 n n 
O2' HO2' 3GP sing 61 n n 
C1' N9 3GP sing 62 n n 
C1' H1' 3GP sing 63 n n 
N9 C8 3GP sing 64 n y 
N9 C4 3GP sing 65 n y 
C8 N7 3GP doub 66 n y 
C8 H8 3GP sing 67 n n 
N7 C5 3GP sing 68 n y 
C5 C6 3GP sing 69 n n 
C5 C4 3GP doub 70 n y 
C6 O6 3GP doub 71 n n 
C6 N1 3GP sing 72 n n 
N1 C2 3GP sing 73 n n 
N1 HN1 3GP sing 74 n n 
C2 N2 3GP sing 75 n n 
C2 N3 3GP doub 76 n n 
N2 HN21 3GP sing 77 n n 
N2 HN22 3GP sing 78 n n 
N3 C4 3GP sing 79 n n 
#
_atom_sites.entry_id                     8IY2 
_atom_sites.fract_transf_matrix[1][1]    0.009669 
_atom_sites.fract_transf_matrix[1][2]    0.005582 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011164 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009853 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 EDO A 1 201 201 EDO EDO . 
H 2 EDO A 1 202 302 EDO EDO . 
I 2 EDO A 1 203 301 EDO EDO . 
J 3 3AM A 1 204 102 3AM AAA . 
K 3 3AM A 1 205 102 3AM AAA . 
L 3 3AM A 1 206 102 3AM AAA . 
M 4 3GP A 1 207 101 3GP 4BW . 
N 3 3AM A 1 208 101 3AM 4BW . 
O 2 EDO B 1 201 201 EDO EDO . 
P 2 EDO B 1 202 302 EDO EDO . 
Q 3 3AM B 1 203 102 3AM AAA . 
R 3 3AM B 1 204 102 3AM AAA . 
S 3 3AM B 1 205 102 3AM AAA . 
T 4 3GP B 1 206 101 3GP 4BW . 
U 3 3AM B 1 207 101 3AM 4BW . 
V 2 EDO C 1 201 201 EDO EDO . 
W 2 EDO C 1 202 302 EDO EDO . 
X 3 3AM C 1 203 101 3AM AAA . 
Y 3 3AM C 1 204 101 3AM AAA . 
Z 3 3AM C 1 205 101 3AM AAA . 
AA 4 3GP C 1 206 101 3GP 4BW . 
BA 2 EDO D 1 201 201 EDO EDO . 
CA 2 EDO D 1 202 302 EDO EDO . 
DA 3 3AM D 1 203 102 3AM AAA . 
EA 3 3AM D 1 204 102 3AM AAA . 
FA 3 3AM D 1 205 102 3AM AAA . 
GA 3 3AM D 1 206 101 3AM 4BW . 
HA 2 EDO E 1 201 201 EDO EDO . 
IA 2 EDO E 1 202 302 EDO EDO . 
JA 3 3AM E 1 203 102 3AM AAA . 
KA 3 3AM E 1 204 102 3AM AAA . 
LA 3 3AM E 1 205 102 3AM AAA . 
MA 4 3GP E 1 206 101 3GP 4BW . 
NA 2 EDO F 1 201 201 EDO EDO . 
OA 2 EDO F 1 202 302 EDO EDO . 
PA 3 3AM F 1 203 101 3AM AAA . 
QA 3 3AM F 1 204 101 3AM AAA . 
RA 3 3AM F 1 205 101 3AM AAA . 
SA 3 3AM F 1 206 101 3AM 4BW . 
TA 5 HOH A 1 301 1 HOH HOH . 
TA 5 HOH A 2 302 3 HOH HOH . 
TA 5 HOH A 3 303 25 HOH HOH . 
TA 5 HOH A 4 304 4 HOH HOH . 
TA 5 HOH A 5 305 5 HOH HOH . 
TA 5 HOH A 6 306 8 HOH HOH . 
TA 5 HOH A 7 307 7 HOH HOH . 
TA 5 HOH A 8 308 17 HOH HOH . 
TA 5 HOH A 9 309 12 HOH HOH . 
TA 5 HOH A 10 310 18 HOH HOH . 
TA 5 HOH A 11 311 20 HOH HOH . 
TA 5 HOH A 12 312 19 HOH HOH . 
TA 5 HOH A 13 313 16 HOH HOH . 
UA 5 HOH B 1 301 21 HOH HOH . 
UA 5 HOH B 2 302 27 HOH HOH . 
UA 5 HOH B 3 303 15 HOH HOH . 
UA 5 HOH B 4 304 26 HOH HOH . 
VA 5 HOH C 1 301 14 HOH HOH . 
WA 5 HOH D 1 301 6 HOH HOH . 
WA 5 HOH D 2 302 13 HOH HOH . 
WA 5 HOH D 3 303 11 HOH HOH . 
WA 5 HOH D 4 304 23 HOH HOH . 
WA 5 HOH D 5 305 24 HOH HOH . 
WA 5 HOH D 6 306 9 HOH HOH . 
XA 5 HOH F 1 301 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 3GP . . . MA 4 15.391 -52.105 -16.312 1 63.15 ? P 3GP 206 E 1 
HETATM 2 O O2P 3GP . . . MA 4 14.891 -53.485 -16.057 1 61.67 ? O2P 3GP 206 E 1 
HETATM 3 O O3P 3GP . . . MA 4 16.768 -51.96 -16.865 1 66.03 ? O3P 3GP 206 E 1 
HETATM 4 O O5' 3GP . . . MA 4 12.686 -47.791 -16.652 1 67.08 ? O5' 3GP 206 E 1 
HETATM 5 C C5' 3GP . . . MA 4 12.223 -48.974 -17.34 1 64.37 ? C5' 3GP 206 E 1 
HETATM 6 C C4' 3GP . . . MA 4 13.28 -49.425 -18.315 1 64.62 ? C4' 3GP 206 E 1 
HETATM 7 O O4' 3GP . . . MA 4 13.789 -48.299 -19.046 1 66.5 ? O4' 3GP 206 E 1 
HETATM 8 C C3' 3GP . . . MA 4 14.535 -50.033 -17.71 1 66.47 ? C3' 3GP 206 E 1 
HETATM 9 O O3' 3GP . . . MA 4 14.3 -51.343 -17.213 1 64.9 ? O3' 3GP 206 E 1 
HETATM 10 C C2' 3GP . . . MA 4 15.464 -50.002 -18.919 1 66.77 ? C2' 3GP 206 E 1 
HETATM 11 O O2' 3GP . . . MA 4 15.174 -51.11 -19.758 1 63.92 ? O2' 3GP 206 E 1 
HETATM 12 C C1' 3GP . . . MA 4 15.055 -48.677 -19.584 1 67.12 ? C1' 3GP 206 E 1 
HETATM 13 N N9 3GP . . . MA 4 16.007 -47.567 -19.409 1 72.93 ? N9 3GP 206 E 1 
HETATM 14 C C8 3GP . . . MA 4 15.994 -46.597 -18.419 1 75.43 ? C8 3GP 206 E 1 
HETATM 15 N N7 3GP . . . MA 4 16.993 -45.735 -18.535 1 78.57 ? N7 3GP 206 E 1 
HETATM 16 C C5 3GP . . . MA 4 17.691 -46.153 -19.646 1 78.38 ? C5 3GP 206 E 1 
HETATM 17 C C6 3GP . . . MA 4 18.86 -45.62 -20.258 1 82.36 ? C6 3GP 206 E 1 
HETATM 18 O O6 3GP . . . MA 4 19.526 -44.632 -19.916 1 87.8 ? O6 3GP 206 E 1 
HETATM 19 N N1 3GP . . . MA 4 19.232 -46.37 -21.373 1 77.6 ? N1 3GP 206 E 1 
HETATM 20 C C2 3GP . . . MA 4 18.571 -47.48 -21.841 1 76.67 ? C2 3GP 206 E 1 
HETATM 21 N N2 3GP . . . MA 4 19.082 -48.065 -22.935 1 75.07 ? N2 3GP 206 E 1 
HETATM 22 N N3 3GP . . . MA 4 17.479 -47.985 -21.274 1 74.41 ? N3 3GP 206 E 1 
HETATM 23 C C4 3GP . . . MA 4 17.105 -47.28 -20.195 1 75.64 ? C4 3GP 206 E 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           51 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           566 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#