data_8IYL # _model_server_result.job_id 39gXxrIACSh4G4N38Cl8vw _model_server_result.datetime_utc '2024-10-19 17:33:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"QA","auth_seq_id":301}' # _entry.id 8IYL # _exptl.entry_id 8IYL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 351.64 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IYL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 42-meric _pdbx_struct_assembly.oligomeric_count 42 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 QA N N ? 7 RA N N ? 7 SA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D SG CYS 173 L CYS 173 1_555 QA FE3 SF4 . L SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc2 D SG CYS 182 L CYS 182 1_555 QA FE1 SF4 . L SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc3 D SG CYS 205 L CYS 205 1_555 QA FE2 SF4 . L SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc4 D SG CYS 212 L CYS 212 1_555 QA FE4 SF4 . L SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 R SG CYS 173 G CYS 173 1_555 RA FE3 SF4 . G SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc6 R SG CYS 182 G CYS 182 1_555 RA FE1 SF4 . G SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc7 R SG CYS 205 G CYS 205 1_555 RA FE2 SF4 . G SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc8 R SG CYS 212 G CYS 212 1_555 RA FE4 SF4 . G SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc9 FA SG CYS 173 d CYS 173 1_555 SA FE3 SF4 . d SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc10 FA SG CYS 182 d CYS 182 1_555 SA FE1 SF4 . d SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 FA SG CYS 205 d CYS 205 1_555 SA FE2 SF4 . d SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc12 FA SG CYS 212 d CYS 212 1_555 SA FE4 SF4 . d SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 288 n n FE1 S3 SF4 sing 289 n n FE1 S4 SF4 sing 290 n n FE2 S1 SF4 sing 291 n n FE2 S3 SF4 sing 292 n n FE2 S4 SF4 sing 293 n n FE3 S1 SF4 sing 294 n n FE3 S2 SF4 sing 295 n n FE3 S4 SF4 sing 296 n n FE4 S1 SF4 sing 297 n n FE4 S2 SF4 sing 298 n n FE4 S3 SF4 sing 299 n n # _atom_sites.entry_id 8IYL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code QA 7 SF4 L 1 301 301 SF4 SF4 . RA 7 SF4 G 1 301 301 SF4 SF4 . SA 7 SF4 d 1 301 301 SF4 SF4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . QA 7 220.211 265.327 217.509 1 80.5 ? FE1 SF4 301 L 1 HETATM 2 FE FE2 SF4 . . . QA 7 220.07 262.598 217.425 1 86.67 ? FE2 SF4 301 L 1 HETATM 3 FE FE3 SF4 . . . QA 7 222.457 263.857 216.989 1 85.62 ? FE3 SF4 301 L 1 HETATM 4 FE FE4 SF4 . . . QA 7 220.464 264.016 215.125 1 81.39 ? FE4 SF4 301 L 1 HETATM 5 S S1 SF4 . . . QA 7 221.575 262.14 215.781 1 72.87 ? S1 SF4 301 L 1 HETATM 6 S S2 SF4 . . . QA 7 221.76 265.724 215.889 1 81.12 ? S2 SF4 301 L 1 HETATM 7 S S3 SF4 . . . QA 7 218.622 264.074 216.464 1 68.04 ? S3 SF4 301 L 1 HETATM 8 S S4 SF4 . . . QA 7 221.242 263.859 218.917 1 83.53 ? S4 SF4 301 L 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 94 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #