data_8IYV # _model_server_result.job_id rm-vMv7-HJHUjEXWDtc1Lg _model_server_result.datetime_utc '2025-02-18 15:21:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 8IYV # _exptl.entry_id 8IYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.461 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description famotidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8IYV _cell.length_a 54.449 _cell.length_b 54.449 _cell.length_c 106.284 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 A SG CYS 173 A CYS 193 1_555 A SG CYS 197 A CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'C8 H17 N7 O2 S3' _chem_comp.formula_weight 339.461 _chem_comp.id FO9 _chem_comp.mon_nstd_flag . _chem_comp.name famotidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FO9 sing 83 n n C1 C FO9 sing 84 n n C2 S FO9 sing 85 n n N2 C7 FO9 sing 86 n n O1 S2 FO9 doub 87 n n S2 O FO9 doub 88 n n S2 N6 FO9 sing 89 n n S2 N5 FO9 sing 90 n n N5 C FO9 doub 91 n n C N FO9 sing 92 n n S C3 FO9 sing 93 n n C3 C4 FO9 sing 94 n n C4 N4 FO9 doub 95 n n C4 C5 FO9 sing 96 n n N4 C6 FO9 sing 97 n n C6 S1 FO9 doub 98 n n S1 C5 FO9 sing 99 n n N1 C7 FO9 doub 100 n n C7 N3 FO9 sing 101 n n C6 N1 FO9 sing 102 n n C1 H1 FO9 sing 103 n n C1 H2 FO9 sing 104 n n C2 H3 FO9 sing 105 n n C2 H4 FO9 sing 106 n n N2 H5 FO9 sing 107 n n N6 H6 FO9 sing 108 n n N6 H7 FO9 sing 109 n n N H9 FO9 sing 110 n n C3 H10 FO9 sing 111 n n C3 H11 FO9 sing 112 n n C5 H13 FO9 sing 113 n n N3 H15 FO9 sing 114 n n N3 H16 FO9 sing 115 n n N2 H17 FO9 sing 116 n n N H8 FO9 sing 117 n n S1 H12 FO9 sing 118 n n C5 H18 FO9 sing 119 n n # _atom_sites.entry_id 8IYV _atom_sites.fract_transf_matrix[1][1] 0.018366 _atom_sites.fract_transf_matrix[1][2] 0.010604 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 3 CA A 1 302 1 CA CA . D 4 CL A 1 303 1 CL CL . E 5 FO9 A 1 304 301 FO9 LIG . F 6 HOH A 1 401 24 HOH HOH . F 6 HOH A 2 402 111 HOH HOH . F 6 HOH A 3 403 122 HOH HOH . F 6 HOH A 4 404 120 HOH HOH . F 6 HOH A 5 405 130 HOH HOH . F 6 HOH A 6 406 147 HOH HOH . F 6 HOH A 7 407 5 HOH HOH . F 6 HOH A 8 408 150 HOH HOH . F 6 HOH A 9 409 95 HOH HOH . F 6 HOH A 10 410 151 HOH HOH . F 6 HOH A 11 411 14 HOH HOH . F 6 HOH A 12 412 138 HOH HOH . F 6 HOH A 13 413 43 HOH HOH . F 6 HOH A 14 414 101 HOH HOH . F 6 HOH A 15 415 63 HOH HOH . F 6 HOH A 16 416 55 HOH HOH . F 6 HOH A 17 417 139 HOH HOH . F 6 HOH A 18 418 98 HOH HOH . F 6 HOH A 19 419 49 HOH HOH . F 6 HOH A 20 420 78 HOH HOH . F 6 HOH A 21 421 82 HOH HOH . F 6 HOH A 22 422 35 HOH HOH . F 6 HOH A 23 423 45 HOH HOH . F 6 HOH A 24 424 152 HOH HOH . F 6 HOH A 25 425 146 HOH HOH . F 6 HOH A 26 426 126 HOH HOH . F 6 HOH A 27 427 65 HOH HOH . F 6 HOH A 28 428 38 HOH HOH . F 6 HOH A 29 429 113 HOH HOH . F 6 HOH A 30 430 104 HOH HOH . F 6 HOH A 31 431 41 HOH HOH . F 6 HOH A 32 432 124 HOH HOH . F 6 HOH A 33 433 48 HOH HOH . F 6 HOH A 34 434 61 HOH HOH . F 6 HOH A 35 435 91 HOH HOH . F 6 HOH A 36 436 140 HOH HOH . F 6 HOH A 37 437 110 HOH HOH . F 6 HOH A 38 438 149 HOH HOH . F 6 HOH A 39 439 18 HOH HOH . F 6 HOH A 40 440 51 HOH HOH . F 6 HOH A 41 441 89 HOH HOH . F 6 HOH A 42 442 12 HOH HOH . F 6 HOH A 43 443 59 HOH HOH . F 6 HOH A 44 444 9 HOH HOH . F 6 HOH A 45 445 70 HOH HOH . F 6 HOH A 46 446 76 HOH HOH . F 6 HOH A 47 447 42 HOH HOH . F 6 HOH A 48 448 69 HOH HOH . F 6 HOH A 49 449 86 HOH HOH . F 6 HOH A 50 450 90 HOH HOH . F 6 HOH A 51 451 85 HOH HOH . F 6 HOH A 52 452 56 HOH HOH . F 6 HOH A 53 453 53 HOH HOH . F 6 HOH A 54 454 148 HOH HOH . F 6 HOH A 55 455 77 HOH HOH . F 6 HOH A 56 456 116 HOH HOH . F 6 HOH A 57 457 27 HOH HOH . F 6 HOH A 58 458 96 HOH HOH . F 6 HOH A 59 459 15 HOH HOH . F 6 HOH A 60 460 71 HOH HOH . F 6 HOH A 61 461 50 HOH HOH . F 6 HOH A 62 462 143 HOH HOH . F 6 HOH A 63 463 60 HOH HOH . F 6 HOH A 64 464 67 HOH HOH . F 6 HOH A 65 465 156 HOH HOH . F 6 HOH A 66 466 62 HOH HOH . F 6 HOH A 67 467 102 HOH HOH . F 6 HOH A 68 468 128 HOH HOH . F 6 HOH A 69 469 37 HOH HOH . F 6 HOH A 70 470 21 HOH HOH . F 6 HOH A 71 471 25 HOH HOH . F 6 HOH A 72 472 68 HOH HOH . F 6 HOH A 73 473 114 HOH HOH . F 6 HOH A 74 474 1 HOH HOH . F 6 HOH A 75 475 39 HOH HOH . F 6 HOH A 76 476 118 HOH HOH . F 6 HOH A 77 477 117 HOH HOH . F 6 HOH A 78 478 142 HOH HOH . F 6 HOH A 79 479 47 HOH HOH . F 6 HOH A 80 480 46 HOH HOH . F 6 HOH A 81 481 132 HOH HOH . F 6 HOH A 82 482 20 HOH HOH . F 6 HOH A 83 483 10 HOH HOH . F 6 HOH A 84 484 16 HOH HOH . F 6 HOH A 85 485 74 HOH HOH . F 6 HOH A 86 486 7 HOH HOH . F 6 HOH A 87 487 125 HOH HOH . F 6 HOH A 88 488 155 HOH HOH . F 6 HOH A 89 489 127 HOH HOH . F 6 HOH A 90 490 32 HOH HOH . F 6 HOH A 91 491 36 HOH HOH . F 6 HOH A 92 492 4 HOH HOH . F 6 HOH A 93 493 72 HOH HOH . F 6 HOH A 94 494 23 HOH HOH . F 6 HOH A 95 495 99 HOH HOH . F 6 HOH A 96 496 97 HOH HOH . F 6 HOH A 97 497 105 HOH HOH . F 6 HOH A 98 498 33 HOH HOH . F 6 HOH A 99 499 30 HOH HOH . F 6 HOH A 100 500 92 HOH HOH . F 6 HOH A 101 501 22 HOH HOH . F 6 HOH A 102 502 112 HOH HOH . F 6 HOH A 103 503 123 HOH HOH . F 6 HOH A 104 504 75 HOH HOH . F 6 HOH A 105 505 83 HOH HOH . F 6 HOH A 106 506 6 HOH HOH . F 6 HOH A 107 507 34 HOH HOH . F 6 HOH A 108 508 17 HOH HOH . F 6 HOH A 109 509 109 HOH HOH . F 6 HOH A 110 510 100 HOH HOH . F 6 HOH A 111 511 158 HOH HOH . F 6 HOH A 112 512 31 HOH HOH . F 6 HOH A 113 513 141 HOH HOH . F 6 HOH A 114 514 11 HOH HOH . F 6 HOH A 115 515 19 HOH HOH . F 6 HOH A 116 516 93 HOH HOH . F 6 HOH A 117 517 135 HOH HOH . F 6 HOH A 118 518 119 HOH HOH . F 6 HOH A 119 519 28 HOH HOH . F 6 HOH A 120 520 137 HOH HOH . F 6 HOH A 121 521 94 HOH HOH . F 6 HOH A 122 522 88 HOH HOH . F 6 HOH A 123 523 79 HOH HOH . F 6 HOH A 124 524 87 HOH HOH . F 6 HOH A 125 525 52 HOH HOH . F 6 HOH A 126 526 40 HOH HOH . F 6 HOH A 127 527 136 HOH HOH . F 6 HOH A 128 528 3 HOH HOH . F 6 HOH A 129 529 29 HOH HOH . F 6 HOH A 130 530 64 HOH HOH . F 6 HOH A 131 531 84 HOH HOH . F 6 HOH A 132 532 133 HOH HOH . F 6 HOH A 133 533 80 HOH HOH . F 6 HOH A 134 534 103 HOH HOH . F 6 HOH A 135 535 26 HOH HOH . F 6 HOH A 136 536 157 HOH HOH . F 6 HOH A 137 537 134 HOH HOH . F 6 HOH A 138 538 66 HOH HOH . F 6 HOH A 139 539 108 HOH HOH . F 6 HOH A 140 540 153 HOH HOH . F 6 HOH A 141 541 107 HOH HOH . F 6 HOH A 142 542 129 HOH HOH . F 6 HOH A 143 543 154 HOH HOH . F 6 HOH A 144 544 131 HOH HOH . F 6 HOH A 145 545 144 HOH HOH . F 6 HOH A 146 546 145 HOH HOH . F 6 HOH A 147 547 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FO9 . . . E 5 18.533 -15.386 -16.82 1 62.02 ? C1 FO9 304 A 1 HETATM 2 C C2 FO9 . . . E 5 18.174 -16.356 -15.713 1 62.33 ? C2 FO9 304 A 1 HETATM 3 N N2 FO9 . . . E 5 12.941 -16.534 -17.907 1 37.27 ? N2 FO9 304 A 1 HETATM 4 N N5 FO9 . . . E 5 18.549 -12.961 -17.026 1 65.86 ? N5 FO9 304 A 1 HETATM 5 C C FO9 . . . E 5 18.908 -14.021 -16.294 1 62.44 ? C FO9 304 A 1 HETATM 6 N N FO9 . . . E 5 19.557 -13.849 -15.157 1 58.31 ? N FO9 304 A 1 HETATM 7 S S FO9 . . . E 5 16.938 -17.605 -16.144 1 58.89 ? S FO9 304 A 1 HETATM 8 C C3 FO9 . . . E 5 15.414 -16.788 -15.6 1 52.96 ? C3 FO9 304 A 1 HETATM 9 C C4 FO9 . . . E 5 14.34 -17.711 -15.123 1 47.6 ? C4 FO9 304 A 1 HETATM 10 N N4 FO9 . . . E 5 13.415 -18.196 -16.024 1 44.76 ? N4 FO9 304 A 1 HETATM 11 C C6 FO9 . . . E 5 12.365 -17.665 -15.446 1 43.1 ? C6 FO9 304 A 1 HETATM 12 S S1 FO9 . . . E 5 12.298 -18.05 -13.752 1 41.32 ? S1 FO9 304 A 1 HETATM 13 C C5 FO9 . . . E 5 14.014 -18.025 -13.845 1 44.42 ? C5 FO9 304 A 1 HETATM 14 N N1 FO9 . . . E 5 11.489 -16.825 -16.071 1 39.42 ? N1 FO9 304 A 1 HETATM 15 C C7 FO9 . . . E 5 11.78 -16.322 -17.273 1 37.8 ? C7 FO9 304 A 1 HETATM 16 N N3 FO9 . . . E 5 10.849 -15.607 -17.907 1 36.91 ? N3 FO9 304 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #