data_8IZ9
#
_model_server_result.job_id            X5iKbIY6OrpoAmhnRlSS8Q 
_model_server_result.datetime_utc      '2025-01-03 04:06:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8iz9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1401}' 
#
_entry.id    8IZ9 
#
_exptl.entry_id    8IZ9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              354.481 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '7-[(1R,3R)-3-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-5-oxocyclopentyl]heptanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8IZ9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IZ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H34 O5' 
_chem_comp.formula_weight    354.481 
_chem_comp.id                XPG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '7-[(1R,3R)-3-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-5-oxocyclopentyl]heptanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Prostaglandin E1' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O15 C15 XPG sing 374 n n 
C18 C17 XPG sing 375 n n 
C18 C19 XPG sing 376 n n 
C20 C19 XPG sing 377 n n 
C16 C17 XPG sing 378 n n 
C16 C15 XPG sing 379 n n 
C15 C14 XPG sing 380 n n 
C14 C13 XPG doub 381 e n 
C13 C12 XPG sing 382 n n 
O11 C11 XPG sing 383 n n 
C11 C12 XPG sing 384 n n 
C11 C10 XPG sing 385 n n 
C12 C8 XPG sing 386 n n 
C8 C9 XPG sing 387 n n 
C8 C7 XPG sing 388 n n 
C10 C9 XPG sing 389 n n 
C9 O9 XPG doub 390 n n 
C7 C6 XPG sing 391 n n 
C6 C5 XPG sing 392 n n 
C5 C4 XPG sing 393 n n 
C4 C3 XPG sing 394 n n 
C3 C2 XPG sing 395 n n 
C2 C1 XPG sing 396 n n 
O1B C1 XPG doub 397 n n 
C1 O1A XPG sing 398 n n 
C20 H1 XPG sing 399 n n 
C20 H2 XPG sing 400 n n 
C20 H3 XPG sing 401 n n 
C19 H4 XPG sing 402 n n 
C19 H5 XPG sing 403 n n 
C18 H6 XPG sing 404 n n 
C18 H7 XPG sing 405 n n 
C17 H8 XPG sing 406 n n 
C17 H9 XPG sing 407 n n 
C16 H10 XPG sing 408 n n 
C16 H11 XPG sing 409 n n 
C15 H12 XPG sing 410 n n 
O15 H13 XPG sing 411 n n 
C14 H14 XPG sing 412 n n 
C13 H15 XPG sing 413 n n 
C12 H16 XPG sing 414 n n 
C11 H17 XPG sing 415 n n 
O11 H18 XPG sing 416 n n 
C10 H19 XPG sing 417 n n 
C10 H20 XPG sing 418 n n 
C8 H21 XPG sing 419 n n 
C7 H22 XPG sing 420 n n 
C7 H23 XPG sing 421 n n 
C6 H24 XPG sing 422 n n 
C6 H25 XPG sing 423 n n 
C5 H26 XPG sing 424 n n 
C5 H27 XPG sing 425 n n 
C4 H28 XPG sing 426 n n 
C4 H29 XPG sing 427 n n 
C3 H30 XPG sing 428 n n 
C3 H31 XPG sing 429 n n 
C2 H32 XPG sing 430 n n 
C2 H33 XPG sing 431 n n 
O1A H34 XPG sing 432 n n 
#
_atom_sites.entry_id                     8IZ9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           XPG 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      1401 
_pdbx_nonpoly_scheme.auth_seq_num     1301 
_pdbx_nonpoly_scheme.pdb_mon_id       XPG 
_pdbx_nonpoly_scheme.auth_mon_id      XPG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C20 XPG . . . B 2 126.173 125.648 118.695 1 42.23 ? C20 XPG 1401 A 1 
HETATM 2 C C19 XPG . . . B 2 126.175 124.93 120.016 1 42.23 ? C19 XPG 1401 A 1 
HETATM 3 C C18 XPG . . . B 2 124.932 124.135 120.267 1 42.23 ? C18 XPG 1401 A 1 
HETATM 4 C C17 XPG . . . B 2 124.681 123.784 121.705 1 42.23 ? C17 XPG 1401 A 1 
HETATM 5 C C16 XPG . . . B 2 124.489 124.959 122.652 1 42.23 ? C16 XPG 1401 A 1 
HETATM 6 C C15 XPG . . . B 2 125.797 125.565 123.12 1 42.23 ? C15 XPG 1401 A 1 
HETATM 7 O O15 XPG . . . B 2 125.818 125.466 124.537 1 42.23 ? O15 XPG 1401 A 1 
HETATM 8 C C14 XPG . . . B 2 126.005 126.993 122.74 1 42.23 ? C14 XPG 1401 A 1 
HETATM 9 C C13 XPG . . . B 2 125.924 127.976 123.574 1 42.23 ? C13 XPG 1401 A 1 
HETATM 10 C C12 XPG . . . B 2 127.014 128.474 124.451 1 42.23 ? C12 XPG 1401 A 1 
HETATM 11 C C11 XPG . . . B 2 126.801 129.954 124.791 1 42.23 ? C11 XPG 1401 A 1 
HETATM 12 O O11 XPG . . . B 2 126.714 130.787 123.645 1 42.23 ? O11 XPG 1401 A 1 
HETATM 13 C C10 XPG . . . B 2 128.021 130.158 125.684 1 42.23 ? C10 XPG 1401 A 1 
HETATM 14 C C9 XPG . . . B 2 128.041 128.901 126.509 1 42.23 ? C9 XPG 1401 A 1 
HETATM 15 O O9 XPG . . . B 2 128.65 128.695 127.527 1 42.23 ? O9 XPG 1401 A 1 
HETATM 16 C C8 XPG . . . B 2 127.113 127.909 125.859 1 42.23 ? C8 XPG 1401 A 1 
HETATM 17 C C7 XPG . . . B 2 127.664 126.535 126.166 1 42.23 ? C7 XPG 1401 A 1 
HETATM 18 C C6 XPG . . . B 2 127.612 126.135 127.631 1 42.23 ? C6 XPG 1401 A 1 
HETATM 19 C C5 XPG . . . B 2 127.525 124.657 127.886 1 42.23 ? C5 XPG 1401 A 1 
HETATM 20 C C4 XPG . . . B 2 126.602 123.91 126.95 1 42.23 ? C4 XPG 1401 A 1 
HETATM 21 C C3 XPG . . . B 2 126.539 122.41 127.164 1 42.23 ? C3 XPG 1401 A 1 
HETATM 22 C C2 XPG . . . B 2 125.76 122.028 128.381 1 42.23 ? C2 XPG 1401 A 1 
HETATM 23 C C1 XPG . . . B 2 126.539 122.07 129.687 1 42.23 ? C1 XPG 1401 A 1 
HETATM 24 O O1A XPG . . . B 2 126.07 121.491 130.675 1 42.23 ? O1A XPG 1401 A 1 
HETATM 25 O O1B XPG . . . B 2 127.616 122.664 129.71 1 42.23 ? O1B XPG 1401 A 1 
HETATM 26 H H1 XPG . . . B 2 126.673 125.13 118.041 1 42.23 ? H1 XPG 1401 A 1 
HETATM 27 H H2 XPG . . . B 2 126.587 126.523 118.8 1 42.23 ? H2 XPG 1401 A 1 
HETATM 28 H H3 XPG . . . B 2 125.257 125.759 118.387 1 42.23 ? H3 XPG 1401 A 1 
HETATM 29 H H4 XPG . . . B 2 126.282 125.588 120.735 1 42.23 ? H4 XPG 1401 A 1 
HETATM 30 H H5 XPG . . . B 2 126.948 124.324 120.048 1 42.23 ? H5 XPG 1401 A 1 
HETATM 31 H H6 XPG . . . B 2 124.982 123.304 119.748 1 42.23 ? H6 XPG 1401 A 1 
HETATM 32 H H7 XPG . . . B 2 124.163 124.645 119.933 1 42.23 ? H7 XPG 1401 A 1 
HETATM 33 H H8 XPG . . . B 2 125.437 123.249 122.029 1 42.23 ? H8 XPG 1401 A 1 
HETATM 34 H H9 XPG . . . B 2 123.881 123.219 121.752 1 42.23 ? H9 XPG 1401 A 1 
HETATM 35 H H10 XPG . . . B 2 123.98 124.657 123.433 1 42.23 ? H10 XPG 1401 A 1 
HETATM 36 H H11 XPG . . . B 2 123.961 125.648 122.2 1 42.23 ? H11 XPG 1401 A 1 
HETATM 37 H H12 XPG . . . B 2 126.543 125.024 122.75 1 42.23 ? H12 XPG 1401 A 1 
HETATM 38 H H13 XPG . . . B 2 126.453 124.957 124.761 1 42.23 ? H13 XPG 1401 A 1 
HETATM 39 H H14 XPG . . . B 2 126.208 127.191 121.84 1 42.23 ? H14 XPG 1401 A 1 
HETATM 40 H H15 XPG . . . B 2 125.091 128.425 123.634 1 42.23 ? H15 XPG 1401 A 1 
HETATM 41 H H16 XPG . . . B 2 127.885 128.375 123.991 1 42.23 ? H16 XPG 1401 A 1 
HETATM 42 H H17 XPG . . . B 2 125.98 130.054 125.326 1 42.23 ? H17 XPG 1401 A 1 
HETATM 43 H H18 XPG . . . B 2 127.472 130.847 123.268 1 42.23 ? H18 XPG 1401 A 1 
HETATM 44 H H19 XPG . . . B 2 127.92 130.949 126.252 1 42.23 ? H19 XPG 1401 A 1 
HETATM 45 H H20 XPG . . . B 2 128.84 130.242 125.156 1 42.23 ? H20 XPG 1401 A 1 
HETATM 46 H H21 XPG . . . B 2 126.231 127.99 126.299 1 42.23 ? H21 XPG 1401 A 1 
HETATM 47 H H22 XPG . . . B 2 128.599 126.499 125.871 1 42.23 ? H22 XPG 1401 A 1 
HETATM 48 H H23 XPG . . . B 2 127.164 125.876 125.641 1 42.23 ? H23 XPG 1401 A 1 
HETATM 49 H H24 XPG . . . B 2 126.836 126.571 128.041 1 42.23 ? H24 XPG 1401 A 1 
HETATM 50 H H25 XPG . . . B 2 128.416 126.483 128.073 1 42.23 ? H25 XPG 1401 A 1 
HETATM 51 H H26 XPG . . . B 2 127.218 124.516 128.807 1 42.23 ? H26 XPG 1401 A 1 
HETATM 52 H H27 XPG . . . B 2 128.424 124.273 127.81 1 42.23 ? H27 XPG 1401 A 1 
HETATM 53 H H28 XPG . . . B 2 126.89 124.08 126.028 1 42.23 ? H28 XPG 1401 A 1 
HETATM 54 H H29 XPG . . . B 2 125.697 124.276 127.049 1 42.23 ? H29 XPG 1401 A 1 
HETATM 55 H H30 XPG . . . B 2 127.454 122.064 127.244 1 42.23 ? H30 XPG 1401 A 1 
HETATM 56 H H31 XPG . . . B 2 126.131 121.995 126.376 1 42.23 ? H31 XPG 1401 A 1 
HETATM 57 H H32 XPG . . . B 2 125.413 121.118 128.259 1 42.23 ? H32 XPG 1401 A 1 
HETATM 58 H H33 XPG . . . B 2 124.989 122.628 128.463 1 42.23 ? H33 XPG 1401 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           58 
#