data_8IZD # _model_server_result.job_id 2iLvRDndaPC70PQ5rIZ3Ew _model_server_result.datetime_utc '2025-03-06 09:06:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8izd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 8IZD # _exptl.entry_id 8IZD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1146.209 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Hexacosanoyl-CoA _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IZD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 53 B CYS 53 1_555 B SG CYS 75 B CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 B SG CYS 102 B CYS 102 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 D SG CYS 53 D CYS 53 1_555 D SG CYS 75 D CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 D SG CYS 102 D CYS 102 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C47 H86 N7 O17 P3 S' _chem_comp.formula_weight 1146.209 _chem_comp.id 9NY _chem_comp.mon_nstd_flag . _chem_comp.name Hexacosanoyl-CoA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'C26:0 Coenzyme A' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C42 C39 9NY sing 137 n n C39 C37 9NY sing 138 n n C37 C34 9NY sing 139 n n C34 C32 9NY sing 140 n n C32 C28 9NY sing 141 n n C28 C26 9NY sing 142 n n C22 C26 9NY sing 143 n n C22 C20 9NY sing 144 n n C18 C20 9NY sing 145 n n C18 C16 9NY sing 146 n n C14 C16 9NY sing 147 n n C14 C12 9NY sing 148 n n C12 C13 9NY sing 149 n n C13 C15 9NY sing 150 n n C15 C17 9NY sing 151 n n C17 C19 9NY sing 152 n n C19 C21 9NY sing 153 n n C21 C23 9NY sing 154 n n C23 C27 9NY sing 155 n n C27 C29 9NY sing 156 n n C29 C33 9NY sing 157 n n C33 C35 9NY sing 158 n n C35 C38 9NY sing 159 n n C38 C40 9NY sing 160 n n C40 C44 9NY sing 161 n n O16 C44 9NY doub 162 n n C44 S1 9NY sing 163 n n C46 C47 9NY sing 164 n n C46 S1 9NY sing 165 n n C47 N7 9NY sing 166 n n N7 C45 9NY sing 167 n n O17 C45 9NY doub 168 n n C45 C43 9NY sing 169 n n C43 C41 9NY sing 170 n n C41 N6 9NY sing 171 n n O15 C36 9NY doub 172 n n N6 C36 9NY sing 173 n n C36 C25 9NY sing 174 n n C31 C11 9NY sing 175 n n C25 O12 9NY sing 176 n n C25 C11 9NY sing 177 n n C11 C24 9NY sing 178 n n C11 C30 9NY sing 179 n n O13 P3 9NY doub 180 n n C24 O11 9NY sing 181 n n O11 P3 9NY sing 182 n n P3 O8 9NY sing 183 n n P3 O14 9NY sing 184 n n O8 P2 9NY sing 185 n n P2 O9 9NY doub 186 n n P2 O4 9NY sing 187 n n P2 O10 9NY sing 188 n n O4 C10 9NY sing 189 n n C10 C9 9NY sing 190 n n C9 O3 9NY sing 191 n n C9 C8 9NY sing 192 n n O3 C5 9NY sing 193 n n O2 C8 9NY sing 194 n n O2 P1 9NY sing 195 n n C8 C7 9NY sing 196 n n O7 P1 9NY doub 197 n n P1 O6 9NY sing 198 n n P1 O5 9NY sing 199 n n C5 C7 9NY sing 200 n n C5 N5 9NY sing 201 n n C7 O1 9NY sing 202 n n C4 N5 9NY sing 203 n y C4 N4 9NY doub 204 n y N5 C1 9NY sing 205 n y N4 C2 9NY sing 206 n y C1 C2 9NY doub 207 n y C1 N2 9NY sing 208 n y C2 C3 9NY sing 209 n y N2 C6 9NY doub 210 n y C3 N3 9NY sing 211 n n C3 N1 9NY doub 212 n y C6 N1 9NY sing 213 n y C4 H1 9NY sing 214 n n C5 H2 9NY sing 215 n n C6 H3 9NY sing 216 n n C7 H4 9NY sing 217 n n C8 H5 9NY sing 218 n n C9 H6 9NY sing 219 n n C10 H7 9NY sing 220 n n C10 H8 9NY sing 221 n n C12 H9 9NY sing 222 n n C12 H10 9NY sing 223 n n C13 H11 9NY sing 224 n n C13 H12 9NY sing 225 n n C14 H13 9NY sing 226 n n C14 H14 9NY sing 227 n n C15 H15 9NY sing 228 n n C15 H16 9NY sing 229 n n C16 H17 9NY sing 230 n n C16 H18 9NY sing 231 n n C17 H19 9NY sing 232 n n C17 H20 9NY sing 233 n n C18 H21 9NY sing 234 n n C18 H22 9NY sing 235 n n C19 H23 9NY sing 236 n n C19 H24 9NY sing 237 n n C20 H25 9NY sing 238 n n C20 H26 9NY sing 239 n n C21 H27 9NY sing 240 n n C21 H28 9NY sing 241 n n C22 H29 9NY sing 242 n n C22 H30 9NY sing 243 n n C23 H31 9NY sing 244 n n C23 H32 9NY sing 245 n n C24 H33 9NY sing 246 n n C24 H34 9NY sing 247 n n C25 H35 9NY sing 248 n n C26 H36 9NY sing 249 n n C26 H37 9NY sing 250 n n C27 H38 9NY sing 251 n n C27 H39 9NY sing 252 n n C28 H40 9NY sing 253 n n C28 H41 9NY sing 254 n n C29 H42 9NY sing 255 n n C29 H43 9NY sing 256 n n C30 H44 9NY sing 257 n n C30 H45 9NY sing 258 n n C30 H46 9NY sing 259 n n C31 H47 9NY sing 260 n n C31 H48 9NY sing 261 n n C31 H49 9NY sing 262 n n C32 H50 9NY sing 263 n n C32 H51 9NY sing 264 n n C33 H52 9NY sing 265 n n C33 H53 9NY sing 266 n n C34 H54 9NY sing 267 n n C34 H55 9NY sing 268 n n C35 H56 9NY sing 269 n n C35 H57 9NY sing 270 n n C37 H58 9NY sing 271 n n C37 H59 9NY sing 272 n n C38 H60 9NY sing 273 n n C38 H61 9NY sing 274 n n C39 H62 9NY sing 275 n n C39 H63 9NY sing 276 n n C40 H64 9NY sing 277 n n C40 H65 9NY sing 278 n n C41 H66 9NY sing 279 n n C41 H67 9NY sing 280 n n C42 H68 9NY sing 281 n n C42 H69 9NY sing 282 n n C42 H70 9NY sing 283 n n C43 H71 9NY sing 284 n n C43 H72 9NY sing 285 n n C46 H73 9NY sing 286 n n C46 H74 9NY sing 287 n n C47 H75 9NY sing 288 n n C47 H76 9NY sing 289 n n N3 H77 9NY sing 290 n n N3 H78 9NY sing 291 n n N6 H79 9NY sing 292 n n N7 H80 9NY sing 293 n n O1 H81 9NY sing 294 n n O5 H82 9NY sing 295 n n O6 H83 9NY sing 296 n n O10 H84 9NY sing 297 n n O12 H85 9NY sing 298 n n O14 H86 9NY sing 299 n n # _atom_sites.entry_id 8IZD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 6PL A 1 501 3 6PL 6PL . F 4 9NY A 1 502 1 9NY DRG . G 3 6PL B 1 201 1 6PL 6PL . H 3 6PL B 1 202 2 6PL 6PL . I 3 6PL C 1 501 6 6PL 6PL . J 4 9NY C 1 502 2 9NY DRG . K 3 6PL D 1 201 4 6PL 6PL . L 3 6PL D 1 202 5 6PL 6PL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9NY . . . F 4 152.167 181.343 160.16 1 57.88 ? C1 9NY 502 A 1 HETATM 2 C C2 9NY . . . F 4 152.465 182.548 160.655 1 57.88 ? C2 9NY 502 A 1 HETATM 3 C C3 9NY . . . F 4 151.726 183.141 161.586 1 57.88 ? C3 9NY 502 A 1 HETATM 4 C C4 9NY . . . F 4 153.929 182.028 159.17 1 57.88 ? C4 9NY 502 A 1 HETATM 5 N N1 9NY . . . F 4 150.662 182.584 162.107 1 57.88 ? N1 9NY 502 A 1 HETATM 6 N N2 9NY . . . F 4 151.079 180.735 160.659 1 57.88 ? N2 9NY 502 A 1 HETATM 7 C C5 9NY . . . F 4 153.349 179.799 158.219 1 57.88 ? C5 9NY 502 A 1 HETATM 8 C C6 9NY . . . F 4 150.299 181.352 161.647 1 57.88 ? C6 9NY 502 A 1 HETATM 9 C C7 9NY . . . F 4 152.273 178.757 158.315 1 57.88 ? C7 9NY 502 A 1 HETATM 10 C C8 9NY . . . F 4 152.163 178.309 156.907 1 57.88 ? C8 9NY 502 A 1 HETATM 11 C C9 9NY . . . F 4 153.404 178.832 156.281 1 57.88 ? C9 9NY 502 A 1 HETATM 12 C C10 9NY . . . F 4 153.295 178.886 154.767 1 57.88 ? C10 9NY 502 A 1 HETATM 13 C C11 9NY . . . F 4 148.811 173.08 150.422 1 57.88 ? C11 9NY 502 A 1 HETATM 14 C C12 9NY . . . F 4 145.758 162.453 128.057 1 57.88 ? C12 9NY 502 A 1 HETATM 15 C C13 9NY . . . F 4 145.875 163.663 129.033 1 57.88 ? C13 9NY 502 A 1 HETATM 16 C C14 9NY . . . F 4 144.392 162.157 127.475 1 57.88 ? C14 9NY 502 A 1 HETATM 17 C C15 9NY . . . F 4 146.571 163.361 130.442 1 57.88 ? C15 9NY 502 A 1 HETATM 18 C C16 9NY . . . F 4 143.835 160.787 127.719 1 57.88 ? C16 9NY 502 A 1 HETATM 19 C C17 9NY . . . F 4 148.12 163.741 130.666 1 57.88 ? C17 9NY 502 A 1 HETATM 20 C C18 9NY . . . F 4 143.337 160.184 126.443 1 57.88 ? C18 9NY 502 A 1 HETATM 21 C C19 9NY . . . F 4 148.988 162.93 131.679 1 57.88 ? C19 9NY 502 A 1 HETATM 22 C C20 9NY . . . F 4 142.505 158.933 126.602 1 57.88 ? C20 9NY 502 A 1 HETATM 23 C C21 9NY . . . F 4 148.876 163.483 133.063 1 57.88 ? C21 9NY 502 A 1 HETATM 24 C C22 9NY . . . F 4 141.714 158.776 125.39 1 57.88 ? C22 9NY 502 A 1 HETATM 25 C C23 9NY . . . F 4 150.171 163.326 133.803 1 57.88 ? C23 9NY 502 A 1 HETATM 26 C C24 9NY . . . F 4 150.172 173.433 150.768 1 57.88 ? C24 9NY 502 A 1 HETATM 27 C C25 9NY . . . F 4 148.875 171.718 149.775 1 57.88 ? C25 9NY 502 A 1 HETATM 28 C C26 9NY . . . F 4 140.801 157.662 125.401 1 57.88 ? C26 9NY 502 A 1 HETATM 29 C C27 9NY . . . F 4 150.034 163.86 135.253 1 57.88 ? C27 9NY 502 A 1 HETATM 30 C C28 9NY . . . F 4 140.398 157.595 123.987 1 57.88 ? C28 9NY 502 A 1 HETATM 31 C C29 9NY . . . F 4 151.388 164.174 135.986 1 57.88 ? C29 9NY 502 A 1 HETATM 32 C C30 9NY . . . F 4 148.205 172.997 151.781 1 57.88 ? C30 9NY 502 A 1 HETATM 33 C C31 9NY . . . F 4 148.052 174.097 149.68 1 57.88 ? C31 9NY 502 A 1 HETATM 34 C C32 9NY . . . F 4 139.406 156.534 123.873 1 57.88 ? C32 9NY 502 A 1 HETATM 35 C C33 9NY . . . F 4 151.173 165.084 137.24 1 57.88 ? C33 9NY 502 A 1 HETATM 36 C C34 9NY . . . F 4 139.361 156.095 122.485 1 57.88 ? C34 9NY 502 A 1 HETATM 37 C C35 9NY . . . F 4 152.37 165.919 137.714 1 57.88 ? C35 9NY 502 A 1 HETATM 38 C C36 9NY . . . F 4 148.912 171.607 148.362 1 57.88 ? C36 9NY 502 A 1 HETATM 39 C C37 9NY . . . F 4 138.195 155.176 122.279 1 57.88 ? C37 9NY 502 A 1 HETATM 40 C C38 9NY . . . F 4 153.324 165.225 138.751 1 57.88 ? C38 9NY 502 A 1 HETATM 41 C C39 9NY . . . F 4 137.619 155.367 120.92 1 57.88 ? C39 9NY 502 A 1 HETATM 42 C C40 9NY . . . F 4 152.866 165.075 140.244 1 57.88 ? C40 9NY 502 A 1 HETATM 43 C C41 9NY . . . F 4 149.303 170.138 146.509 1 57.88 ? C41 9NY 502 A 1 HETATM 44 C C42 9NY . . . F 4 136.143 155.322 120.87 1 57.88 ? C42 9NY 502 A 1 HETATM 45 C C43 9NY . . . F 4 149.966 168.709 146.442 1 57.88 ? C43 9NY 502 A 1 HETATM 46 C C44 9NY . . . F 4 153.674 165.725 141.435 1 57.88 ? C44 9NY 502 A 1 HETATM 47 C C45 9NY . . . F 4 150.784 168.388 145.216 1 57.88 ? C45 9NY 502 A 1 HETATM 48 C C46 9NY . . . F 4 151.368 165.59 143.202 1 57.88 ? C46 9NY 502 A 1 HETATM 49 C C47 9NY . . . F 4 151.041 167.112 143.235 1 57.88 ? C47 9NY 502 A 1 HETATM 50 N N3 9NY . . . F 4 152.131 184.32 161.996 1 57.88 ? N3 9NY 502 A 1 HETATM 51 N N4 9NY . . . F 4 153.566 182.95 160.048 1 57.88 ? N4 9NY 502 A 1 HETATM 52 N N5 9NY . . . F 4 153.08 181.006 159.204 1 57.88 ? N5 9NY 502 A 1 HETATM 53 N N6 9NY . . . F 4 149.096 170.439 147.904 1 57.88 ? N6 9NY 502 A 1 HETATM 54 N N7 9NY . . . F 4 150.309 167.477 144.452 1 57.88 ? N7 9NY 502 A 1 HETATM 55 O O1 9NY . . . F 4 152.615 177.677 159.22 1 57.88 ? O1 9NY 502 A 1 HETATM 56 O O2 9NY . . . F 4 152.034 176.877 156.795 1 57.88 ? O2 9NY 502 A 1 HETATM 57 O O3 9NY . . . F 4 153.403 180.073 156.783 1 57.88 ? O3 9NY 502 A 1 HETATM 58 O O4 9NY . . . F 4 153.805 177.709 154.029 1 57.88 ? O4 9NY 502 A 1 HETATM 59 O O5 9NY . . . F 4 151.821 175.791 159.072 1 57.88 ? O5 9NY 502 A 1 HETATM 60 O O6 9NY . . . F 4 149.805 176.65 157.933 1 57.88 ? O6 9NY 502 A 1 HETATM 61 O O7 9NY . . . F 4 150.882 174.574 156.969 1 57.88 ? O7 9NY 502 A 1 HETATM 62 O O8 9NY . . . F 4 152.677 175.895 152.289 1 57.88 ? O8 9NY 502 A 1 HETATM 63 O O9 9NY . . . F 4 154.456 175.672 153.696 1 57.88 ? O9 9NY 502 A 1 HETATM 64 O O10 9NY . . . F 4 152.253 175.568 154.517 1 57.88 ? O10 9NY 502 A 1 HETATM 65 O O11 9NY . . . F 4 150.46 174.691 151.386 1 57.88 ? O11 9NY 502 A 1 HETATM 66 O O12 9NY . . . F 4 147.772 171.066 150.064 1 57.88 ? O12 9NY 502 A 1 HETATM 67 O O13 9NY . . . F 4 152.56 174.424 150.714 1 57.88 ? O13 9NY 502 A 1 HETATM 68 O O14 9NY . . . F 4 151.31 173.696 153.115 1 57.88 ? O14 9NY 502 A 1 HETATM 69 O O15 9NY . . . F 4 148.806 172.534 147.681 1 57.88 ? O15 9NY 502 A 1 HETATM 70 O O16 9NY . . . F 4 154.554 166.515 141.223 1 57.88 ? O16 9NY 502 A 1 HETATM 71 O O17 9NY . . . F 4 151.852 168.887 145.008 1 57.88 ? O17 9NY 502 A 1 HETATM 72 P P1 9NY . . . F 4 151.105 175.855 157.642 1 57.88 ? P1 9NY 502 A 1 HETATM 73 P P2 9NY . . . F 4 153.184 176.227 153.632 1 57.88 ? P2 9NY 502 A 1 HETATM 74 P P3 9NY . . . F 4 151.832 174.649 152.087 1 57.88 ? P3 9NY 502 A 1 HETATM 75 S S1 9NY . . . F 4 153.176 165.249 143.296 1 57.88 ? S1 9NY 502 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 75 #