data_8IZE # _model_server_result.job_id ytB83C8997nLY_uDOKUMDw _model_server_result.datetime_utc '2024-11-13 04:53:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ize # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8IZE # _exptl.entry_id 8IZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.118 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(E)-3-(hydroxymethyl)pent-2-enyl] phosphono hydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IZE _cell.length_a 45.401 _cell.length_b 125.309 _cell.length_c 39.129 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O8 P2' _chem_comp.formula_weight 276.118 _chem_comp.id S9R _chem_comp.mon_nstd_flag . _chem_comp.name '[(E)-3-(hydroxymethyl)pent-2-enyl] phosphono hydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAP CAA S9R sing 293 n n OAI PAG S9R doub 294 n n OAL PAK S9R doub 295 n n CAA CAB S9R sing 296 n n OAF PAG S9R sing 297 n n OAF CAE S9R sing 298 n n CAC CAB S9R doub 299 e n CAC CAE S9R sing 300 n n CAB CAD S9R sing 301 n n PAG OAJ S9R sing 302 n n PAG OAH S9R sing 303 n n CAO CAD S9R sing 304 n n PAK OAN S9R sing 305 n n PAK OAJ S9R sing 306 n n PAK OAM S9R sing 307 n n OAM H1 S9R sing 308 n n OAN H2 S9R sing 309 n n OAH H3 S9R sing 310 n n CAE H4 S9R sing 311 n n CAE H5 S9R sing 312 n n CAC H6 S9R sing 313 n n CAD H7 S9R sing 314 n n CAD H8 S9R sing 315 n n CAO H9 S9R sing 316 n n CAO H10 S9R sing 317 n n CAO H11 S9R sing 318 n n CAA H12 S9R sing 319 n n CAA H13 S9R sing 320 n n OAP H14 S9R sing 321 n n # _atom_sites.entry_id 8IZE _atom_sites.fract_transf_matrix[1][1] 0.022026 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 501 1 PEG PEG . C 3 S9R A 1 502 1 S9R DRG . D 4 HOH A 1 601 192 HOH HOH . D 4 HOH A 2 602 114 HOH HOH . D 4 HOH A 3 603 94 HOH HOH . D 4 HOH A 4 604 45 HOH HOH . D 4 HOH A 5 605 149 HOH HOH . D 4 HOH A 6 606 198 HOH HOH . D 4 HOH A 7 607 28 HOH HOH . D 4 HOH A 8 608 173 HOH HOH . D 4 HOH A 9 609 63 HOH HOH . D 4 HOH A 10 610 107 HOH HOH . D 4 HOH A 11 611 178 HOH HOH . D 4 HOH A 12 612 210 HOH HOH . D 4 HOH A 13 613 177 HOH HOH . D 4 HOH A 14 614 55 HOH HOH . D 4 HOH A 15 615 64 HOH HOH . D 4 HOH A 16 616 87 HOH HOH . D 4 HOH A 17 617 75 HOH HOH . D 4 HOH A 18 618 36 HOH HOH . D 4 HOH A 19 619 180 HOH HOH . D 4 HOH A 20 620 225 HOH HOH . D 4 HOH A 21 621 200 HOH HOH . D 4 HOH A 22 622 130 HOH HOH . D 4 HOH A 23 623 19 HOH HOH . D 4 HOH A 24 624 31 HOH HOH . D 4 HOH A 25 625 199 HOH HOH . D 4 HOH A 26 626 26 HOH HOH . D 4 HOH A 27 627 96 HOH HOH . D 4 HOH A 28 628 76 HOH HOH . D 4 HOH A 29 629 219 HOH HOH . D 4 HOH A 30 630 125 HOH HOH . D 4 HOH A 31 631 42 HOH HOH . D 4 HOH A 32 632 126 HOH HOH . D 4 HOH A 33 633 134 HOH HOH . D 4 HOH A 34 634 2 HOH HOH . D 4 HOH A 35 635 204 HOH HOH . D 4 HOH A 36 636 167 HOH HOH . D 4 HOH A 37 637 35 HOH HOH . D 4 HOH A 38 638 82 HOH HOH . D 4 HOH A 39 639 163 HOH HOH . D 4 HOH A 40 640 24 HOH HOH . D 4 HOH A 41 641 110 HOH HOH . D 4 HOH A 42 642 157 HOH HOH . D 4 HOH A 43 643 74 HOH HOH . D 4 HOH A 44 644 7 HOH HOH . D 4 HOH A 45 645 50 HOH HOH . D 4 HOH A 46 646 60 HOH HOH . D 4 HOH A 47 647 91 HOH HOH . D 4 HOH A 48 648 155 HOH HOH . D 4 HOH A 49 649 104 HOH HOH . D 4 HOH A 50 650 70 HOH HOH . D 4 HOH A 51 651 68 HOH HOH . D 4 HOH A 52 652 78 HOH HOH . D 4 HOH A 53 653 14 HOH HOH . D 4 HOH A 54 654 21 HOH HOH . D 4 HOH A 55 655 30 HOH HOH . D 4 HOH A 56 656 62 HOH HOH . D 4 HOH A 57 657 103 HOH HOH . D 4 HOH A 58 658 145 HOH HOH . D 4 HOH A 59 659 48 HOH HOH . D 4 HOH A 60 660 67 HOH HOH . D 4 HOH A 61 661 34 HOH HOH . D 4 HOH A 62 662 25 HOH HOH . D 4 HOH A 63 663 97 HOH HOH . D 4 HOH A 64 664 168 HOH HOH . D 4 HOH A 65 665 140 HOH HOH . D 4 HOH A 66 666 27 HOH HOH . D 4 HOH A 67 667 37 HOH HOH . D 4 HOH A 68 668 33 HOH HOH . D 4 HOH A 69 669 220 HOH HOH . D 4 HOH A 70 670 142 HOH HOH . D 4 HOH A 71 671 89 HOH HOH . D 4 HOH A 72 672 175 HOH HOH . D 4 HOH A 73 673 98 HOH HOH . D 4 HOH A 74 674 77 HOH HOH . D 4 HOH A 75 675 127 HOH HOH . D 4 HOH A 76 676 3 HOH HOH . D 4 HOH A 77 677 151 HOH HOH . D 4 HOH A 78 678 194 HOH HOH . D 4 HOH A 79 679 146 HOH HOH . D 4 HOH A 80 680 179 HOH HOH . D 4 HOH A 81 681 44 HOH HOH . D 4 HOH A 82 682 29 HOH HOH . D 4 HOH A 83 683 23 HOH HOH . D 4 HOH A 84 684 164 HOH HOH . D 4 HOH A 85 685 141 HOH HOH . D 4 HOH A 86 686 5 HOH HOH . D 4 HOH A 87 687 90 HOH HOH . D 4 HOH A 88 688 133 HOH HOH . D 4 HOH A 89 689 85 HOH HOH . D 4 HOH A 90 690 9 HOH HOH . D 4 HOH A 91 691 193 HOH HOH . D 4 HOH A 92 692 138 HOH HOH . D 4 HOH A 93 693 43 HOH HOH . D 4 HOH A 94 694 41 HOH HOH . D 4 HOH A 95 695 115 HOH HOH . D 4 HOH A 96 696 39 HOH HOH . D 4 HOH A 97 697 143 HOH HOH . D 4 HOH A 98 698 11 HOH HOH . D 4 HOH A 99 699 8 HOH HOH . D 4 HOH A 100 700 206 HOH HOH . D 4 HOH A 101 701 99 HOH HOH . D 4 HOH A 102 702 38 HOH HOH . D 4 HOH A 103 703 86 HOH HOH . D 4 HOH A 104 704 10 HOH HOH . D 4 HOH A 105 705 69 HOH HOH . D 4 HOH A 106 706 95 HOH HOH . D 4 HOH A 107 707 22 HOH HOH . D 4 HOH A 108 708 106 HOH HOH . D 4 HOH A 109 709 201 HOH HOH . D 4 HOH A 110 710 66 HOH HOH . D 4 HOH A 111 711 71 HOH HOH . D 4 HOH A 112 712 136 HOH HOH . D 4 HOH A 113 713 56 HOH HOH . D 4 HOH A 114 714 119 HOH HOH . D 4 HOH A 115 715 6 HOH HOH . D 4 HOH A 116 716 32 HOH HOH . D 4 HOH A 117 717 216 HOH HOH . D 4 HOH A 118 718 203 HOH HOH . D 4 HOH A 119 719 47 HOH HOH . D 4 HOH A 120 720 156 HOH HOH . D 4 HOH A 121 721 51 HOH HOH . D 4 HOH A 122 722 59 HOH HOH . D 4 HOH A 123 723 13 HOH HOH . D 4 HOH A 124 724 58 HOH HOH . D 4 HOH A 125 725 12 HOH HOH . D 4 HOH A 126 726 169 HOH HOH . D 4 HOH A 127 727 148 HOH HOH . D 4 HOH A 128 728 54 HOH HOH . D 4 HOH A 129 729 122 HOH HOH . D 4 HOH A 130 730 1 HOH HOH . D 4 HOH A 131 731 158 HOH HOH . D 4 HOH A 132 732 108 HOH HOH . D 4 HOH A 133 733 118 HOH HOH . D 4 HOH A 134 734 72 HOH HOH . D 4 HOH A 135 735 83 HOH HOH . D 4 HOH A 136 736 17 HOH HOH . D 4 HOH A 137 737 112 HOH HOH . D 4 HOH A 138 738 16 HOH HOH . D 4 HOH A 139 739 15 HOH HOH . D 4 HOH A 140 740 159 HOH HOH . D 4 HOH A 141 741 129 HOH HOH . D 4 HOH A 142 742 57 HOH HOH . D 4 HOH A 143 743 93 HOH HOH . D 4 HOH A 144 744 40 HOH HOH . D 4 HOH A 145 745 100 HOH HOH . D 4 HOH A 146 746 80 HOH HOH . D 4 HOH A 147 747 144 HOH HOH . D 4 HOH A 148 748 109 HOH HOH . D 4 HOH A 149 749 18 HOH HOH . D 4 HOH A 150 750 117 HOH HOH . D 4 HOH A 151 751 53 HOH HOH . D 4 HOH A 152 752 88 HOH HOH . D 4 HOH A 153 753 81 HOH HOH . D 4 HOH A 154 754 61 HOH HOH . D 4 HOH A 155 755 161 HOH HOH . D 4 HOH A 156 756 20 HOH HOH . D 4 HOH A 157 757 189 HOH HOH . D 4 HOH A 158 758 4 HOH HOH . D 4 HOH A 159 759 102 HOH HOH . D 4 HOH A 160 760 123 HOH HOH . D 4 HOH A 161 761 153 HOH HOH . D 4 HOH A 162 762 46 HOH HOH . D 4 HOH A 163 763 181 HOH HOH . D 4 HOH A 164 764 65 HOH HOH . D 4 HOH A 165 765 139 HOH HOH . D 4 HOH A 166 766 105 HOH HOH . D 4 HOH A 167 767 217 HOH HOH . D 4 HOH A 168 768 187 HOH HOH . D 4 HOH A 169 769 214 HOH HOH . D 4 HOH A 170 770 207 HOH HOH . D 4 HOH A 171 771 195 HOH HOH . D 4 HOH A 172 772 183 HOH HOH . D 4 HOH A 173 773 182 HOH HOH . D 4 HOH A 174 774 213 HOH HOH . D 4 HOH A 175 775 211 HOH HOH . D 4 HOH A 176 776 205 HOH HOH . D 4 HOH A 177 777 121 HOH HOH . D 4 HOH A 178 778 172 HOH HOH . D 4 HOH A 179 779 120 HOH HOH . D 4 HOH A 180 780 124 HOH HOH . D 4 HOH A 181 781 185 HOH HOH . D 4 HOH A 182 782 218 HOH HOH . D 4 HOH A 183 783 186 HOH HOH . D 4 HOH A 184 784 197 HOH HOH . D 4 HOH A 185 785 116 HOH HOH . D 4 HOH A 186 786 215 HOH HOH . D 4 HOH A 187 787 212 HOH HOH . D 4 HOH A 188 788 131 HOH HOH . D 4 HOH A 189 789 174 HOH HOH . D 4 HOH A 190 790 152 HOH HOH . D 4 HOH A 191 791 150 HOH HOH . D 4 HOH A 192 792 113 HOH HOH . D 4 HOH A 193 793 166 HOH HOH . D 4 HOH A 194 794 135 HOH HOH . D 4 HOH A 195 795 160 HOH HOH . D 4 HOH A 196 796 84 HOH HOH . D 4 HOH A 197 797 171 HOH HOH . D 4 HOH A 198 798 92 HOH HOH . D 4 HOH A 199 799 79 HOH HOH . D 4 HOH A 200 800 147 HOH HOH . D 4 HOH A 201 801 222 HOH HOH . D 4 HOH A 202 802 176 HOH HOH . D 4 HOH A 203 803 191 HOH HOH . D 4 HOH A 204 804 162 HOH HOH . D 4 HOH A 205 805 184 HOH HOH . D 4 HOH A 206 806 52 HOH HOH . D 4 HOH A 207 807 73 HOH HOH . D 4 HOH A 208 808 209 HOH HOH . D 4 HOH A 209 809 170 HOH HOH . D 4 HOH A 210 810 223 HOH HOH . D 4 HOH A 211 811 202 HOH HOH . D 4 HOH A 212 812 190 HOH HOH . D 4 HOH A 213 813 137 HOH HOH . D 4 HOH A 214 814 49 HOH HOH . D 4 HOH A 215 815 154 HOH HOH . D 4 HOH A 216 816 111 HOH HOH . D 4 HOH A 217 817 188 HOH HOH . D 4 HOH A 218 818 196 HOH HOH . D 4 HOH A 219 819 128 HOH HOH . D 4 HOH A 220 820 101 HOH HOH . D 4 HOH A 221 821 224 HOH HOH . D 4 HOH A 222 822 165 HOH HOH . D 4 HOH A 223 823 132 HOH HOH . D 4 HOH A 224 824 208 HOH HOH . D 4 HOH A 225 825 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAM S9R . . . C 3 2.079 20.089 21.865 1 15.32 ? OAM S9R 502 A 1 HETATM 2 P PAK S9R . . . C 3 0.849 19.955 20.934 1 14.39 ? PAK S9R 502 A 1 HETATM 3 O OAN S9R . . . C 3 0.085 18.701 21.254 1 14.84 ? OAN S9R 502 A 1 HETATM 4 O OAL S9R . . . C 3 1.206 20.115 19.482 1 13.27 ? OAL S9R 502 A 1 HETATM 5 O OAJ S9R . . . C 3 -0.143 21.149 21.399 1 15.7 ? OAJ S9R 502 A 1 HETATM 6 P PAG S9R . . . C 3 -0.832 22.383 20.628 1 19.1 ? PAG S9R 502 A 1 HETATM 7 O OAI S9R . . . C 3 -1.648 21.953 19.403 1 22.63 ? OAI S9R 502 A 1 HETATM 8 O OAH S9R . . . C 3 -1.604 23.101 21.699 1 21.99 ? OAH S9R 502 A 1 HETATM 9 O OAF S9R . . . C 3 0.366 23.28 20.088 1 17.8 ? OAF S9R 502 A 1 HETATM 10 C CAE S9R . . . C 3 1.356 23.817 21.07 1 18.53 ? CAE S9R 502 A 1 HETATM 11 C CAC S9R . . . C 3 2.321 24.598 20.259 1 17.31 ? CAC S9R 502 A 1 HETATM 12 C CAB S9R . . . C 3 2.335 26.07 20.407 1 18.09 ? CAB S9R 502 A 1 HETATM 13 C CAD S9R . . . C 3 1.604 26.77 21.559 1 23.31 ? CAD S9R 502 A 1 HETATM 14 C CAO S9R . . . C 3 0.447 27.445 20.847 1 24.73 ? CAO S9R 502 A 1 HETATM 15 C CAA S9R . . . C 3 3.321 26.936 19.591 1 16.57 ? CAA S9R 502 A 1 HETATM 16 O OAP S9R . . . C 3 4.053 26.113 18.696 1 13.06 ? OAP S9R 502 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 16 #