data_8IZH
#
_model_server_result.job_id            FmWlGPoHewYlNoHS-vIqPg 
_model_server_result.datetime_utc      '2024-11-25 21:15:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8izh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":310}' 
#
_entry.id    8IZH 
#
_exptl.entry_id    8IZH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8IZH 
_cell.length_a            54.59 
_cell.length_b            58.248 
_cell.length_c            66.326 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IZH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 139 n n 
C1 C2 GOL sing 140 n n 
C1 H11 GOL sing 141 n n 
C1 H12 GOL sing 142 n n 
O1 HO1 GOL sing 143 n n 
C2 O2 GOL sing 144 n n 
C2 C3 GOL sing 145 n n 
C2 H2 GOL sing 146 n n 
O2 HO2 GOL sing 147 n n 
C3 O3 GOL sing 148 n n 
C3 H31 GOL sing 149 n n 
C3 H32 GOL sing 150 n n 
O3 HO3 GOL sing 151 n n 
#
_atom_sites.entry_id                     8IZH 
_atom_sites.fract_transf_matrix[1][1]    0.018318 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017168 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015077 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 301 1 CA CA . 
C 3 CL A 1 302 1 CL CL . 
D 3 CL A 1 303 2 CL CL . 
E 4 SO4 A 1 304 1 SO4 SO4 . 
F 5 AGU A 1 305 298 AGU LIG . 
G 5 AGU A 1 306 299 AGU LIG . 
H 5 AGU A 1 307 300 AGU LIG . 
I 5 AGU A 1 308 301 AGU LIG . 
J 6 GOL A 1 309 302 GOL GOL . 
K 6 GOL A 1 310 303 GOL GOL . 
L 7 HOH A 1 401 116 HOH HOH . 
L 7 HOH A 2 402 90 HOH HOH . 
L 7 HOH A 3 403 40 HOH HOH . 
L 7 HOH A 4 404 18 HOH HOH . 
L 7 HOH A 5 405 12 HOH HOH . 
L 7 HOH A 6 406 152 HOH HOH . 
L 7 HOH A 7 407 155 HOH HOH . 
L 7 HOH A 8 408 68 HOH HOH . 
L 7 HOH A 9 409 122 HOH HOH . 
L 7 HOH A 10 410 63 HOH HOH . 
L 7 HOH A 11 411 45 HOH HOH . 
L 7 HOH A 12 412 52 HOH HOH . 
L 7 HOH A 13 413 118 HOH HOH . 
L 7 HOH A 14 414 140 HOH HOH . 
L 7 HOH A 15 415 22 HOH HOH . 
L 7 HOH A 16 416 132 HOH HOH . 
L 7 HOH A 17 417 65 HOH HOH . 
L 7 HOH A 18 418 6 HOH HOH . 
L 7 HOH A 19 419 41 HOH HOH . 
L 7 HOH A 20 420 124 HOH HOH . 
L 7 HOH A 21 421 5 HOH HOH . 
L 7 HOH A 22 422 145 HOH HOH . 
L 7 HOH A 23 423 20 HOH HOH . 
L 7 HOH A 24 424 24 HOH HOH . 
L 7 HOH A 25 425 31 HOH HOH . 
L 7 HOH A 26 426 50 HOH HOH . 
L 7 HOH A 27 427 76 HOH HOH . 
L 7 HOH A 28 428 7 HOH HOH . 
L 7 HOH A 29 429 146 HOH HOH . 
L 7 HOH A 30 430 93 HOH HOH . 
L 7 HOH A 31 431 141 HOH HOH . 
L 7 HOH A 32 432 82 HOH HOH . 
L 7 HOH A 33 433 28 HOH HOH . 
L 7 HOH A 34 434 144 HOH HOH . 
L 7 HOH A 35 435 133 HOH HOH . 
L 7 HOH A 36 436 121 HOH HOH . 
L 7 HOH A 37 437 42 HOH HOH . 
L 7 HOH A 38 438 60 HOH HOH . 
L 7 HOH A 39 439 29 HOH HOH . 
L 7 HOH A 40 440 128 HOH HOH . 
L 7 HOH A 41 441 130 HOH HOH . 
L 7 HOH A 42 442 21 HOH HOH . 
L 7 HOH A 43 443 89 HOH HOH . 
L 7 HOH A 44 444 35 HOH HOH . 
L 7 HOH A 45 445 92 HOH HOH . 
L 7 HOH A 46 446 75 HOH HOH . 
L 7 HOH A 47 447 47 HOH HOH . 
L 7 HOH A 48 448 85 HOH HOH . 
L 7 HOH A 49 449 127 HOH HOH . 
L 7 HOH A 50 450 34 HOH HOH . 
L 7 HOH A 51 451 106 HOH HOH . 
L 7 HOH A 52 452 131 HOH HOH . 
L 7 HOH A 53 453 151 HOH HOH . 
L 7 HOH A 54 454 149 HOH HOH . 
L 7 HOH A 55 455 147 HOH HOH . 
L 7 HOH A 56 456 79 HOH HOH . 
L 7 HOH A 57 457 55 HOH HOH . 
L 7 HOH A 58 458 26 HOH HOH . 
L 7 HOH A 59 459 59 HOH HOH . 
L 7 HOH A 60 460 120 HOH HOH . 
L 7 HOH A 61 461 8 HOH HOH . 
L 7 HOH A 62 462 43 HOH HOH . 
L 7 HOH A 63 463 107 HOH HOH . 
L 7 HOH A 64 464 123 HOH HOH . 
L 7 HOH A 65 465 14 HOH HOH . 
L 7 HOH A 66 466 17 HOH HOH . 
L 7 HOH A 67 467 148 HOH HOH . 
L 7 HOH A 68 468 33 HOH HOH . 
L 7 HOH A 69 469 88 HOH HOH . 
L 7 HOH A 70 470 150 HOH HOH . 
L 7 HOH A 71 471 27 HOH HOH . 
L 7 HOH A 72 472 70 HOH HOH . 
L 7 HOH A 73 473 83 HOH HOH . 
L 7 HOH A 74 474 119 HOH HOH . 
L 7 HOH A 75 475 16 HOH HOH . 
L 7 HOH A 76 476 126 HOH HOH . 
L 7 HOH A 77 477 11 HOH HOH . 
L 7 HOH A 78 478 39 HOH HOH . 
L 7 HOH A 79 479 78 HOH HOH . 
L 7 HOH A 80 480 101 HOH HOH . 
L 7 HOH A 81 481 23 HOH HOH . 
L 7 HOH A 82 482 67 HOH HOH . 
L 7 HOH A 83 483 25 HOH HOH . 
L 7 HOH A 84 484 73 HOH HOH . 
L 7 HOH A 85 485 99 HOH HOH . 
L 7 HOH A 86 486 153 HOH HOH . 
L 7 HOH A 87 487 104 HOH HOH . 
L 7 HOH A 88 488 125 HOH HOH . 
L 7 HOH A 89 489 37 HOH HOH . 
L 7 HOH A 90 490 84 HOH HOH . 
L 7 HOH A 91 491 44 HOH HOH . 
L 7 HOH A 92 492 13 HOH HOH . 
L 7 HOH A 93 493 4 HOH HOH . 
L 7 HOH A 94 494 3 HOH HOH . 
L 7 HOH A 95 495 19 HOH HOH . 
L 7 HOH A 96 496 72 HOH HOH . 
L 7 HOH A 97 497 10 HOH HOH . 
L 7 HOH A 98 498 97 HOH HOH . 
L 7 HOH A 99 499 53 HOH HOH . 
L 7 HOH A 100 500 56 HOH HOH . 
L 7 HOH A 101 501 129 HOH HOH . 
L 7 HOH A 102 502 54 HOH HOH . 
L 7 HOH A 103 503 36 HOH HOH . 
L 7 HOH A 104 504 105 HOH HOH . 
L 7 HOH A 105 505 32 HOH HOH . 
L 7 HOH A 106 506 51 HOH HOH . 
L 7 HOH A 107 507 81 HOH HOH . 
L 7 HOH A 108 508 136 HOH HOH . 
L 7 HOH A 109 509 62 HOH HOH . 
L 7 HOH A 110 510 57 HOH HOH . 
L 7 HOH A 111 511 154 HOH HOH . 
L 7 HOH A 112 512 137 HOH HOH . 
L 7 HOH A 113 513 77 HOH HOH . 
L 7 HOH A 114 514 71 HOH HOH . 
L 7 HOH A 115 515 30 HOH HOH . 
L 7 HOH A 116 516 61 HOH HOH . 
L 7 HOH A 117 517 91 HOH HOH . 
L 7 HOH A 118 518 48 HOH HOH . 
L 7 HOH A 119 519 96 HOH HOH . 
L 7 HOH A 120 520 58 HOH HOH . 
L 7 HOH A 121 521 15 HOH HOH . 
L 7 HOH A 122 522 49 HOH HOH . 
L 7 HOH A 123 523 94 HOH HOH . 
L 7 HOH A 124 524 111 HOH HOH . 
L 7 HOH A 125 525 113 HOH HOH . 
L 7 HOH A 126 526 95 HOH HOH . 
L 7 HOH A 127 527 115 HOH HOH . 
L 7 HOH A 128 528 117 HOH HOH . 
L 7 HOH A 129 529 143 HOH HOH . 
L 7 HOH A 130 530 109 HOH HOH . 
L 7 HOH A 131 531 108 HOH HOH . 
L 7 HOH A 132 532 98 HOH HOH . 
L 7 HOH A 133 533 142 HOH HOH . 
L 7 HOH A 134 534 102 HOH HOH . 
L 7 HOH A 135 535 74 HOH HOH . 
L 7 HOH A 136 536 103 HOH HOH . 
L 7 HOH A 137 537 80 HOH HOH . 
L 7 HOH A 138 538 110 HOH HOH . 
L 7 HOH A 139 539 66 HOH HOH . 
L 7 HOH A 140 540 114 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 6 -15.346 7.036 -18.409 1 22.33 ? C1 GOL 310 A 1 
HETATM 2 O O1 GOL . . . K 6 -16.433 6.233 -18.873 1 20.51 ? O1 GOL 310 A 1 
HETATM 3 C C2 GOL . . . K 6 -15.738 8.426 -17.92 1 22.36 ? C2 GOL 310 A 1 
HETATM 4 O O2 GOL . . . K 6 -15.54 9.365 -18.98 1 23.75 ? O2 GOL 310 A 1 
HETATM 5 C C3 GOL . . . K 6 -17.156 8.525 -17.383 1 23.16 ? C3 GOL 310 A 1 
HETATM 6 O O3 GOL . . . K 6 -17.352 9.66 -16.537 1 22.57 ? O3 GOL 310 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#