data_8J00 # _model_server_result.job_id mctJ8MkVdT5xnpR1apD7SA _model_server_result.datetime_utc '2024-10-19 12:37:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":801}' # _entry.id 8J00 # _exptl.entry_id 8J00 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 314.462 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cannabidiol _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J00 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id P0T _chem_comp.mon_nstd_flag . _chem_comp.name cannabidiol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "(1'R,2'R)-5'-methyl-4-pentyl-2'-(prop-1-en-2-yl)-1',2',3',4'-tetrahydro[1,1'-biphenyl]-2,6-diol" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C09 P0T sing 235 n n C23 C22 P0T sing 236 n n C22 C21 P0T sing 237 n n C09 C06 P0T sing 238 n n C09 C07 P0T doub 239 n n O01 C11 P0T sing 240 n n C06 C05 P0T sing 241 n n C07 C04 P0T sing 242 n n C21 C20 P0T sing 243 n n C20 C18 P0T sing 244 n n C16 C11 P0T doub 245 n y C16 C15 P0T sing 246 n y C11 C08 P0T sing 247 n y C18 C15 P0T sing 248 n n C15 C17 P0T doub 249 n y C08 C04 P0T sing 250 n n C08 C12 P0T doub 251 n y C04 C03 P0T sing 252 n n C17 C12 P0T sing 253 n y C05 C03 P0T sing 254 n n C12 O02 P0T sing 255 n n C03 C10 P0T sing 256 n n C10 C19 P0T doub 257 n n C10 C14 P0T sing 258 n n C13 H1 P0T sing 259 n n C13 H2 P0T sing 260 n n C13 H3 P0T sing 261 n n C14 H4 P0T sing 262 n n C14 H5 P0T sing 263 n n C14 H6 P0T sing 264 n n C03 H7 P0T sing 265 n n C04 H8 P0T sing 266 n n C05 H9 P0T sing 267 n n C05 H10 P0T sing 268 n n C06 H11 P0T sing 269 n n C06 H12 P0T sing 270 n n C07 H13 P0T sing 271 n n C16 H16 P0T sing 272 n n C17 H17 P0T sing 273 n n C18 H18 P0T sing 274 n n C18 H19 P0T sing 275 n n C19 H20 P0T sing 276 n n C19 H21 P0T sing 277 n n C20 H22 P0T sing 278 n n C20 H23 P0T sing 279 n n C21 H24 P0T sing 280 n n C21 H25 P0T sing 281 n n C22 H26 P0T sing 282 n n C22 H27 P0T sing 283 n n C23 H28 P0T sing 284 n n C23 H29 P0T sing 285 n n C23 H30 P0T sing 286 n n O01 H31 P0T sing 287 n n O02 H32 P0T sing 288 n n # _atom_sites.entry_id 8J00 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 P0T A 1 801 1 P0T LIG . J 3 P0T A 1 802 2 P0T LIG . K 3 P0T B 1 801 1 P0T LIG . L 3 P0T B 1 802 2 P0T LIG . M 3 P0T C 1 801 1 P0T LIG . N 3 P0T C 1 802 2 P0T LIG . O 3 P0T D 1 801 1 P0T LIG . P 3 P0T D 1 802 2 P0T LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 P0T . . . I 3 102.523 121.684 97.596 1 76.27 0 C10 P0T 801 A 1 HETATM 2 C C11 P0T . . . I 3 106.518 124.089 96.323 1 76.27 0 C11 P0T 801 A 1 HETATM 3 C C12 P0T . . . I 3 105.853 122.772 94.41 1 76.27 0 C12 P0T 801 A 1 HETATM 4 C C13 P0T . . . I 3 102.988 127.03 96.31 1 76.27 0 C13 P0T 801 A 1 HETATM 5 C C14 P0T . . . I 3 102.962 120.51 97.15 1 76.27 0 C14 P0T 801 A 1 HETATM 6 C C03 P0T . . . I 3 103.539 122.877 97.708 1 76.27 0 C03 P0T 801 A 1 HETATM 7 C C04 P0T . . . I 3 104.082 123.201 96.168 1 76.27 0 C04 P0T 801 A 1 HETATM 8 C C05 P0T . . . I 3 102.993 123.953 98.35 1 76.27 0 C05 P0T 801 A 1 HETATM 9 C C06 P0T . . . I 3 102.035 124.873 97.368 1 76.27 0 C06 P0T 801 A 1 HETATM 10 C C07 P0T . . . I 3 103.969 124.57 95.703 1 76.27 0 C07 P0T 801 A 1 HETATM 11 C C08 P0T . . . I 3 105.54 123.37 95.626 1 76.27 0 C08 P0T 801 A 1 HETATM 12 C C09 P0T . . . I 3 102.839 125.495 96.346 1 76.27 0 C09 P0T 801 A 1 HETATM 13 C C15 P0T . . . I 3 108.118 123.606 94.558 1 76.27 0 C15 P0T 801 A 1 HETATM 14 C C16 P0T . . . I 3 107.809 124.204 95.787 1 76.27 0 C16 P0T 801 A 1 HETATM 15 C C17 P0T . . . I 3 107.138 122.884 93.877 1 76.27 0 C17 P0T 801 A 1 HETATM 16 C C18 P0T . . . I 3 109.541 123.699 93.941 1 76.27 0 C18 P0T 801 A 1 HETATM 17 C C19 P0T . . . I 3 101.025 121.818 97.977 1 76.27 0 C19 P0T 801 A 1 HETATM 18 C C20 P0T . . . I 3 109.835 124.998 93.161 1 76.27 0 C20 P0T 801 A 1 HETATM 19 C C21 P0T . . . I 3 108.754 125.348 92.112 1 76.27 0 C21 P0T 801 A 1 HETATM 20 C C22 P0T . . . I 3 109.238 126.464 91.153 1 76.27 0 C22 P0T 801 A 1 HETATM 21 C C23 P0T . . . I 3 108.151 127.527 90.878 1 76.27 0 C23 P0T 801 A 1 HETATM 22 O O01 P0T . . . I 3 106.206 124.692 97.551 1 76.27 0 O01 P0T 801 A 1 HETATM 23 O O02 P0T . . . I 3 104.863 122.054 93.723 1 76.27 0 O02 P0T 801 A 1 HETATM 24 H H1 P0T . . . I 3 102.182 127.427 96.579 1 76.27 0 H1 P0T 801 A 1 HETATM 25 H H2 P0T . . . I 3 103.194 127.302 95.435 1 76.27 0 H2 P0T 801 A 1 HETATM 26 H H3 P0T . . . I 3 103.677 127.293 96.891 1 76.27 0 H3 P0T 801 A 1 HETATM 27 H H4 P0T . . . I 3 102.376 119.792 97.075 1 76.27 0 H4 P0T 801 A 1 HETATM 28 H H5 P0T . . . I 3 103.856 120.407 96.915 1 76.27 0 H5 P0T 801 A 1 HETATM 29 H H7 P0T . . . I 3 104.274 122.587 98.215 1 76.27 0 H7 P0T 801 A 1 HETATM 30 H H8 P0T . . . I 3 103.609 122.647 95.576 1 76.27 0 H8 P0T 801 A 1 HETATM 31 H H9 P0T . . . I 3 102.497 123.664 99.091 1 76.27 0 H9 P0T 801 A 1 HETATM 32 H H10 P0T . . . I 3 103.697 124.495 98.657 1 76.27 0 H10 P0T 801 A 1 HETATM 33 H H11 P0T . . . I 3 101.61 125.536 97.879 1 76.27 0 H11 P0T 801 A 1 HETATM 34 H H12 P0T . . . I 3 101.391 124.328 96.958 1 76.27 0 H12 P0T 801 A 1 HETATM 35 H H13 P0T . . . I 3 104.348 124.816 94.89 1 76.27 0 H13 P0T 801 A 1 HETATM 36 H H16 P0T . . . I 3 108.461 124.681 96.247 1 76.27 0 H16 P0T 801 A 1 HETATM 37 H H17 P0T . . . I 3 107.339 122.482 93.064 1 76.27 0 H17 P0T 801 A 1 HETATM 38 H H18 P0T . . . I 3 110.169 123.622 94.634 1 76.27 0 H18 P0T 801 A 1 HETATM 39 H H19 P0T . . . I 3 109.656 122.973 93.356 1 76.27 0 H19 P0T 801 A 1 HETATM 40 H H20 P0T . . . I 3 100.635 120.963 97.997 1 76.27 0 H20 P0T 801 A 1 HETATM 41 H H21 P0T . . . I 3 100.58 122.344 97.34 1 76.27 0 H21 P0T 801 A 1 HETATM 42 H H22 P0T . . . I 3 109.913 125.708 93.763 1 76.27 0 H22 P0T 801 A 1 HETATM 43 H H23 P0T . . . I 3 110.656 124.895 92.715 1 76.27 0 H23 P0T 801 A 1 HETATM 44 H H24 P0T . . . I 3 107.978 125.638 92.554 1 76.27 0 H24 P0T 801 A 1 HETATM 45 H H25 P0T . . . I 3 108.555 124.58 91.612 1 76.27 0 H25 P0T 801 A 1 HETATM 46 H H26 P0T . . . I 3 109.984 126.886 91.534 1 76.27 0 H26 P0T 801 A 1 HETATM 47 H H27 P0T . . . I 3 109.491 126.074 90.338 1 76.27 0 H27 P0T 801 A 1 HETATM 48 H H28 P0T . . . I 3 108.329 127.95 90.057 1 76.27 0 H28 P0T 801 A 1 HETATM 49 H H29 P0T . . . I 3 108.163 128.167 91.564 1 76.27 0 H29 P0T 801 A 1 HETATM 50 H H30 P0T . . . I 3 107.309 127.115 90.845 1 76.27 0 H30 P0T 801 A 1 HETATM 51 H H31 P0T . . . I 3 106.402 124.174 98.173 1 76.27 0 H31 P0T 801 A 1 HETATM 52 H H32 P0T . . . I 3 104.271 122.579 93.461 1 76.27 0 H32 P0T 801 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 52 #