data_8J00 # _model_server_result.job_id s-8FqFMYSsT6reS77FCeyg _model_server_result.datetime_utc '2024-10-19 12:32:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":801}' # _entry.id 8J00 # _exptl.entry_id 8J00 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 314.462 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cannabidiol _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J00 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id P0T _chem_comp.mon_nstd_flag . _chem_comp.name cannabidiol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "(1'R,2'R)-5'-methyl-4-pentyl-2'-(prop-1-en-2-yl)-1',2',3',4'-tetrahydro[1,1'-biphenyl]-2,6-diol" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C09 P0T sing 235 n n C23 C22 P0T sing 236 n n C22 C21 P0T sing 237 n n C09 C06 P0T sing 238 n n C09 C07 P0T doub 239 n n O01 C11 P0T sing 240 n n C06 C05 P0T sing 241 n n C07 C04 P0T sing 242 n n C21 C20 P0T sing 243 n n C20 C18 P0T sing 244 n n C16 C11 P0T doub 245 n y C16 C15 P0T sing 246 n y C11 C08 P0T sing 247 n y C18 C15 P0T sing 248 n n C15 C17 P0T doub 249 n y C08 C04 P0T sing 250 n n C08 C12 P0T doub 251 n y C04 C03 P0T sing 252 n n C17 C12 P0T sing 253 n y C05 C03 P0T sing 254 n n C12 O02 P0T sing 255 n n C03 C10 P0T sing 256 n n C10 C19 P0T doub 257 n n C10 C14 P0T sing 258 n n C13 H1 P0T sing 259 n n C13 H2 P0T sing 260 n n C13 H3 P0T sing 261 n n C14 H4 P0T sing 262 n n C14 H5 P0T sing 263 n n C14 H6 P0T sing 264 n n C03 H7 P0T sing 265 n n C04 H8 P0T sing 266 n n C05 H9 P0T sing 267 n n C05 H10 P0T sing 268 n n C06 H11 P0T sing 269 n n C06 H12 P0T sing 270 n n C07 H13 P0T sing 271 n n C16 H16 P0T sing 272 n n C17 H17 P0T sing 273 n n C18 H18 P0T sing 274 n n C18 H19 P0T sing 275 n n C19 H20 P0T sing 276 n n C19 H21 P0T sing 277 n n C20 H22 P0T sing 278 n n C20 H23 P0T sing 279 n n C21 H24 P0T sing 280 n n C21 H25 P0T sing 281 n n C22 H26 P0T sing 282 n n C22 H27 P0T sing 283 n n C23 H28 P0T sing 284 n n C23 H29 P0T sing 285 n n C23 H30 P0T sing 286 n n O01 H31 P0T sing 287 n n O02 H32 P0T sing 288 n n # _atom_sites.entry_id 8J00 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 P0T A 1 801 1 P0T LIG . J 3 P0T A 1 802 2 P0T LIG . K 3 P0T B 1 801 1 P0T LIG . L 3 P0T B 1 802 2 P0T LIG . M 3 P0T C 1 801 1 P0T LIG . N 3 P0T C 1 802 2 P0T LIG . O 3 P0T D 1 801 1 P0T LIG . P 3 P0T D 1 802 2 P0T LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 P0T . . . O 3 101.524 102.515 97.598 1 76.6 0 C10 P0T 801 D 1 HETATM 2 C C11 P0T . . . O 3 99.121 106.513 96.326 1 76.6 0 C11 P0T 801 D 1 HETATM 3 C C12 P0T . . . O 3 100.436 105.848 94.413 1 76.6 0 C12 P0T 801 D 1 HETATM 4 C C13 P0T . . . O 3 96.18 102.985 96.313 1 76.6 0 C13 P0T 801 D 1 HETATM 5 C C14 P0T . . . O 3 102.698 102.954 97.148 1 76.6 0 C14 P0T 801 D 1 HETATM 6 C C03 P0T . . . O 3 100.332 103.534 97.711 1 76.6 0 C03 P0T 801 D 1 HETATM 7 C C04 P0T . . . O 3 100.008 104.077 96.171 1 76.6 0 C04 P0T 801 D 1 HETATM 8 C C05 P0T . . . O 3 99.256 102.989 98.353 1 76.6 0 C05 P0T 801 D 1 HETATM 9 C C06 P0T . . . O 3 98.336 102.031 97.369 1 76.6 0 C06 P0T 801 D 1 HETATM 10 C C07 P0T . . . O 3 98.639 103.965 95.706 1 76.6 0 C07 P0T 801 D 1 HETATM 11 C C08 P0T . . . O 3 99.839 105.535 95.629 1 76.6 0 C08 P0T 801 D 1 HETATM 12 C C09 P0T . . . O 3 97.714 102.835 96.349 1 76.6 0 C09 P0T 801 D 1 HETATM 13 C C15 P0T . . . O 3 99.603 108.114 94.562 1 76.6 0 C15 P0T 801 D 1 HETATM 14 C C16 P0T . . . O 3 99.005 107.805 95.792 1 76.6 0 C16 P0T 801 D 1 HETATM 15 C C17 P0T . . . O 3 100.324 107.133 93.88 1 76.6 0 C17 P0T 801 D 1 HETATM 16 C C18 P0T . . . O 3 99.51 109.536 93.945 1 76.6 0 C18 P0T 801 D 1 HETATM 17 C C19 P0T . . . O 3 101.39 101.019 97.981 1 76.6 0 C19 P0T 801 D 1 HETATM 18 C C20 P0T . . . O 3 98.209 109.83 93.167 1 76.6 0 C20 P0T 801 D 1 HETATM 19 C C21 P0T . . . O 3 97.86 108.751 92.114 1 76.6 0 C21 P0T 801 D 1 HETATM 20 C C22 P0T . . . O 3 96.743 109.235 91.159 1 76.6 0 C22 P0T 801 D 1 HETATM 21 C C23 P0T . . . O 3 95.68 108.148 90.884 1 76.6 0 C23 P0T 801 D 1 HETATM 22 O O01 P0T . . . O 3 98.518 106.201 97.556 1 76.6 0 O01 P0T 801 D 1 HETATM 23 O O02 P0T . . . O 3 101.154 104.858 93.725 1 76.6 0 O02 P0T 801 D 1 HETATM 24 H H1 P0T . . . O 3 95.781 102.178 96.582 1 76.6 0 H1 P0T 801 D 1 HETATM 25 H H2 P0T . . . O 3 95.907 103.191 95.438 1 76.6 0 H2 P0T 801 D 1 HETATM 26 H H3 P0T . . . O 3 95.917 103.673 96.894 1 76.6 0 H3 P0T 801 D 1 HETATM 27 H H4 P0T . . . O 3 103.415 102.367 97.073 1 76.6 0 H4 P0T 801 D 1 HETATM 28 H H5 P0T . . . O 3 102.801 103.846 96.913 1 76.6 0 H5 P0T 801 D 1 HETATM 29 H H7 P0T . . . O 3 100.623 104.268 98.217 1 76.6 0 H7 P0T 801 D 1 HETATM 30 H H8 P0T . . . O 3 100.562 103.604 95.578 1 76.6 0 H8 P0T 801 D 1 HETATM 31 H H9 P0T . . . O 3 99.543 102.491 99.094 1 76.6 0 H9 P0T 801 D 1 HETATM 32 H H10 P0T . . . O 3 98.714 103.692 98.659 1 76.6 0 H10 P0T 801 D 1 HETATM 33 H H11 P0T . . . O 3 97.672 101.605 97.881 1 76.6 0 H11 P0T 801 D 1 HETATM 34 H H12 P0T . . . O 3 98.88 101.386 96.96 1 76.6 0 H12 P0T 801 D 1 HETATM 35 H H13 P0T . . . O 3 98.393 104.344 94.893 1 76.6 0 H13 P0T 801 D 1 HETATM 36 H H16 P0T . . . O 3 98.529 108.456 96.251 1 76.6 0 H16 P0T 801 D 1 HETATM 37 H H17 P0T . . . O 3 100.726 107.335 93.067 1 76.6 0 H17 P0T 801 D 1 HETATM 38 H H18 P0T . . . O 3 99.587 110.165 94.638 1 76.6 0 H18 P0T 801 D 1 HETATM 39 H H19 P0T . . . O 3 100.235 109.651 93.359 1 76.6 0 H19 P0T 801 D 1 HETATM 40 H H20 P0T . . . O 3 102.245 100.628 98 1 76.6 0 H20 P0T 801 D 1 HETATM 41 H H21 P0T . . . O 3 100.862 100.574 97.346 1 76.6 0 H21 P0T 801 D 1 HETATM 42 H H22 P0T . . . O 3 97.5 109.903 93.771 1 76.6 0 H22 P0T 801 D 1 HETATM 43 H H23 P0T . . . O 3 98.308 110.653 92.726 1 76.6 0 H23 P0T 801 D 1 HETATM 44 H H24 P0T . . . O 3 97.574 107.973 92.553 1 76.6 0 H24 P0T 801 D 1 HETATM 45 H H25 P0T . . . O 3 98.629 108.557 91.613 1 76.6 0 H25 P0T 801 D 1 HETATM 46 H H26 P0T . . . O 3 96.319 109.98 91.542 1 76.6 0 H26 P0T 801 D 1 HETATM 47 H H27 P0T . . . O 3 97.13 109.491 90.344 1 76.6 0 H27 P0T 801 D 1 HETATM 48 H H28 P0T . . . O 3 95.257 108.324 90.064 1 76.6 0 H28 P0T 801 D 1 HETATM 49 H H29 P0T . . . O 3 95.041 108.157 91.571 1 76.6 0 H29 P0T 801 D 1 HETATM 50 H H30 P0T . . . O 3 96.094 107.306 90.85 1 76.6 0 H30 P0T 801 D 1 HETATM 51 H H31 P0T . . . O 3 99.036 106.397 98.176 1 76.6 0 H31 P0T 801 D 1 HETATM 52 H H32 P0T . . . O 3 100.629 104.266 93.465 1 76.6 0 H32 P0T 801 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 52 #