data_8J02
#
_model_server_result.job_id            KTE7dsHFPT0X0HlGJKuDdQ 
_model_server_result.datetime_utc      '2024-11-23 00:47:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8j02 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":801}' 
#
_entry.id    8J02 
#
_exptl.entry_id    8J02 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              746.566 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8J02 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8J02 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
? 4 M N N 
? 4 O N N 
#
_chem_comp.formula           'C25 H49 O19 P3' 
_chem_comp.formula_weight    746.566 
_chem_comp.id                PIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'dioctanoyl l-alpha-phosphatidyl-d-myo-inositol 4,5-diphosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PIO sing 312 n n 
C1 C2 PIO sing 313 n n 
C1 C6 PIO sing 314 n n 
C1 H1 PIO sing 315 n n 
O1 P1 PIO sing 316 n n 
P1 O11 PIO sing 317 n n 
O11 H11 PIO sing 318 n n 
P1 O12 PIO doub 319 n n 
P1 O13 PIO sing 320 n n 
C2 O2 PIO sing 321 n n 
C2 C3 PIO sing 322 n n 
C2 H2 PIO sing 323 n n 
O2 HO2 PIO sing 324 n n 
C3 O3 PIO sing 325 n n 
C3 C4 PIO sing 326 n n 
C3 H3 PIO sing 327 n n 
O3 HO3 PIO sing 328 n n 
C4 O4 PIO sing 329 n n 
C4 C5 PIO sing 330 n n 
C4 H4 PIO sing 331 n n 
O4 P4 PIO sing 332 n n 
P4 O41 PIO sing 333 n n 
O41 H41 PIO sing 334 n n 
P4 O42 PIO doub 335 n n 
P4 O43 PIO sing 336 n n 
O43 H43 PIO sing 337 n n 
C5 O5 PIO sing 338 n n 
C5 C6 PIO sing 339 n n 
C5 H5 PIO sing 340 n n 
O5 P5 PIO sing 341 n n 
P5 O51 PIO sing 342 n n 
O51 H51 PIO sing 343 n n 
P5 O52 PIO sing 344 n n 
O52 H52 PIO sing 345 n n 
P5 O53 PIO doub 346 n n 
C6 O6 PIO sing 347 n n 
C6 H6 PIO sing 348 n n 
O6 HO6 PIO sing 349 n n 
O13 C1C PIO sing 350 n n 
C1A O1A PIO doub 351 n n 
C1A C2A PIO sing 352 n n 
C1A O2C PIO sing 353 n n 
C1B O1B PIO doub 354 n n 
C1B C2B PIO sing 355 n n 
C1B O3C PIO sing 356 n n 
C1C C2C PIO sing 357 n n 
C1C H1C PIO sing 358 n n 
C1C H1CA PIO sing 359 n n 
C2A C3A PIO sing 360 n n 
C2A H2A PIO sing 361 n n 
C2A H2AA PIO sing 362 n n 
C2B C3B PIO sing 363 n n 
C2B H2B PIO sing 364 n n 
C2B H2BA PIO sing 365 n n 
C2C O2C PIO sing 366 n n 
C2C C3C PIO sing 367 n n 
C2C H2C PIO sing 368 n n 
C3A C4A PIO sing 369 n n 
C3A H3A PIO sing 370 n n 
C3A H3AA PIO sing 371 n n 
C3B C4B PIO sing 372 n n 
C3B H3B PIO sing 373 n n 
C3B H3BA PIO sing 374 n n 
C3C O3C PIO sing 375 n n 
C3C H3C PIO sing 376 n n 
C3C H3CA PIO sing 377 n n 
C4A C5A PIO sing 378 n n 
C4A H4A PIO sing 379 n n 
C4A H4AA PIO sing 380 n n 
C4B C5B PIO sing 381 n n 
C4B H4B PIO sing 382 n n 
C4B H4BA PIO sing 383 n n 
C5A C6A PIO sing 384 n n 
C5A H5A PIO sing 385 n n 
C5A H5AA PIO sing 386 n n 
C5B C6B PIO sing 387 n n 
C5B H5B PIO sing 388 n n 
C5B H5BA PIO sing 389 n n 
C6A C7A PIO sing 390 n n 
C6A H6A PIO sing 391 n n 
C6A H6AA PIO sing 392 n n 
C6B C7B PIO sing 393 n n 
C6B H6B PIO sing 394 n n 
C6B H6BA PIO sing 395 n n 
C7A C8A PIO sing 396 n n 
C7A H7A PIO sing 397 n n 
C7A H7AA PIO sing 398 n n 
C7B C8B PIO sing 399 n n 
C7B H7B PIO sing 400 n n 
C7B H7BA PIO sing 401 n n 
C8A H8A PIO sing 402 n n 
C8A H8AA PIO sing 403 n n 
C8A H8AB PIO sing 404 n n 
C8B H8B PIO sing 405 n n 
C8B H8BA PIO sing 406 n n 
C8B H8BB PIO sing 407 n n 
#
_atom_sites.entry_id                     8J02 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 P0T A 1 801 1 P0T LIG . 
J 4 PIO A 1 802 901 PIO PIP . 
K 4 PIO B 1 801 902 PIO PIP . 
L 3 P0T B 1 802 4 P0T LIG . 
M 4 PIO D 1 801 903 PIO PIP . 
N 3 P0T D 1 802 3 P0T LIG . 
O 4 PIO G 1 801 904 PIO PIP . 
P 3 P0T G 1 802 2 P0T LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PIO . . . M 4 124.748 131.428 114.619 1 110.87 0 C1 PIO 801 D 1 
HETATM 2 O O1 PIO . . . M 4 124.077 130.221 114.392 1 110.87 0 O1 PIO 801 D 1 
HETATM 3 P P1 PIO . . . M 4 122.712 130.258 113.471 1 110.87 0 P1 PIO 801 D 1 
HETATM 4 C C2 PIO . . . M 4 126.251 131.189 114.482 1 110.87 0 C2 PIO 801 D 1 
HETATM 5 O O2 PIO . . . M 4 126.498 130.587 113.242 1 110.87 0 O2 PIO 801 D 1 
HETATM 6 C C3 PIO . . . M 4 126.749 130.261 115.586 1 110.87 0 C3 PIO 801 D 1 
HETATM 7 O O3 PIO . . . M 4 126.17 128.999 115.41 1 110.87 0 O3 PIO 801 D 1 
HETATM 8 C C4 PIO . . . M 4 126.383 130.787 116.976 1 110.87 0 C4 PIO 801 D 1 
HETATM 9 O O4 PIO . . . M 4 127.56 130.996 117.699 1 110.87 0 O4 PIO 801 D 1 
HETATM 10 P P4 PIO . . . M 4 128.33 129.68 118.321 1 110.87 0 P4 PIO 801 D 1 
HETATM 11 C C5 PIO . . . M 4 125.611 132.104 116.9 1 110.87 0 C5 PIO 801 D 1 
HETATM 12 O O5 PIO . . . M 4 125.203 132.453 118.191 1 110.87 0 O5 PIO 801 D 1 
HETATM 13 P P5 PIO . . . M 4 124.849 134.031 118.504 1 110.87 0 P5 PIO 801 D 1 
HETATM 14 C C6 PIO . . . M 4 124.378 131.947 116.009 1 110.87 0 C6 PIO 801 D 1 
HETATM 15 O O6 PIO . . . M 4 123.752 133.192 115.868 1 110.87 0 O6 PIO 801 D 1 
HETATM 16 O O11 PIO . . . M 4 122.271 128.913 113.113 1 110.87 -1 O11 PIO 801 D 1 
HETATM 17 O O12 PIO . . . M 4 121.564 130.732 114.243 1 110.87 0 O12 PIO 801 D 1 
HETATM 18 O O13 PIO . . . M 4 122.953 131.185 112.132 1 110.87 0 O13 PIO 801 D 1 
HETATM 19 C C1A PIO . . . M 4 125.061 130.376 109.465 1 110.87 0 C1A PIO 801 D 1 
HETATM 20 O O1A PIO . . . M 4 125.97 130.336 110.223 1 110.87 0 O1A PIO 801 D 1 
HETATM 21 C C1B PIO . . . M 4 122.404 132.787 107.23 1 110.87 0 C1B PIO 801 D 1 
HETATM 22 O O1B PIO . . . M 4 123.576 132.768 107.06 1 110.87 0 O1B PIO 801 D 1 
HETATM 23 C C1C PIO . . . M 4 122.038 131.08 111.082 1 110.87 0 C1C PIO 801 D 1 
HETATM 24 C C2A PIO . . . M 4 125.061 129.485 108.227 1 110.87 0 C2A PIO 801 D 1 
HETATM 25 C C2B PIO . . . M 4 121.479 133.29 106.124 1 110.87 0 C2B PIO 801 D 1 
HETATM 26 C C2C PIO . . . M 4 122.748 130.602 109.819 1 110.87 0 C2C PIO 801 D 1 
HETATM 27 O O2C PIO . . . M 4 123.988 131.238 109.709 1 110.87 0 O2C PIO 801 D 1 
HETATM 28 C C3A PIO . . . M 4 126.391 129.628 107.493 1 110.87 0 C3A PIO 801 D 1 
HETATM 29 C C3B PIO . . . M 4 122.059 134.563 105.509 1 110.87 0 C3B PIO 801 D 1 
HETATM 30 C C3C PIO . . . M 4 121.896 130.955 108.603 1 110.87 0 C3C PIO 801 D 1 
HETATM 31 O O3C PIO . . . M 4 121.869 132.344 108.445 1 110.87 0 O3C PIO 801 D 1 
HETATM 32 O O41 PIO . . . M 4 127.905 128.414 117.735 1 110.87 0 O41 PIO 801 D 1 
HETATM 33 O O42 PIO . . . M 4 129.779 129.694 118.138 1 110.87 -1 O42 PIO 801 D 1 
HETATM 34 O O43 PIO . . . M 4 128.146 129.502 119.759 1 110.87 0 O43 PIO 801 D 1 
HETATM 35 C C4A PIO . . . M 4 126.191 129.288 106.018 1 110.87 0 C4A PIO 801 D 1 
HETATM 36 C C4B PIO . . . M 4 122.616 134.258 104.12 1 110.87 0 C4B PIO 801 D 1 
HETATM 37 O O51 PIO . . . M 4 125.966 134.797 119.05 1 110.87 0 O51 PIO 801 D 1 
HETATM 38 O O52 PIO . . . M 4 123.771 134.22 119.47 1 110.87 -1 O52 PIO 801 D 1 
HETATM 39 O O53 PIO . . . M 4 124.422 134.79 117.332 1 110.87 0 O53 PIO 801 D 1 
HETATM 40 C C5A PIO . . . M 4 125.7 130.523 105.271 1 110.87 0 C5A PIO 801 D 1 
HETATM 41 C C5B PIO . . . M 4 121.465 134.116 103.127 1 110.87 0 C5B PIO 801 D 1 
HETATM 42 C C6A PIO . . . M 4 125.51 130.179 103.796 1 110.87 0 C6A PIO 801 D 1 
HETATM 43 C C6B PIO . . . M 4 121.823 133.072 102.071 1 110.87 0 C6B PIO 801 D 1 
HETATM 44 C C7A PIO . . . M 4 125.039 131.417 103.041 1 110.87 0 C7A PIO 801 D 1 
HETATM 45 C C7B PIO . . . M 4 120.671 132.941 101.079 1 110.87 0 C7B PIO 801 D 1 
HETATM 46 C C8A PIO . . . M 4 125.398 131.276 101.563 1 110.87 0 C8A PIO 801 D 1 
HETATM 47 C C8B PIO . . . M 4 119.625 131.981 101.64 1 110.87 0 C8B PIO 801 D 1 
HETATM 48 H H1 PIO . . . M 4 124.472 132.079 113.956 1 110.87 0 H1 PIO 801 D 1 
HETATM 49 H H2 PIO . . . M 4 126.723 132.035 114.525 1 110.87 0 H2 PIO 801 D 1 
HETATM 50 H H3 PIO . . . M 4 127.714 130.185 115.522 1 110.87 0 H3 PIO 801 D 1 
HETATM 51 H H4 PIO . . . M 4 125.837 130.125 117.431 1 110.87 0 H4 PIO 801 D 1 
HETATM 52 H H5 PIO . . . M 4 126.185 132.802 116.548 1 110.87 0 H5 PIO 801 D 1 
HETATM 53 H H6 PIO . . . M 4 123.763 131.324 116.426 1 110.87 0 H6 PIO 801 D 1 
HETATM 54 H H1C PIO . . . M 4 121.344 130.445 111.321 1 110.87 0 H1C PIO 801 D 1 
HETATM 55 H H1CA PIO . . . M 4 121.637 131.948 110.916 1 110.87 0 H1CA PIO 801 D 1 
HETATM 56 H H3C PIO . . . M 4 122.275 130.546 107.81 1 110.87 0 H3C PIO 801 D 1 
HETATM 57 H H3CA PIO . . . M 4 120.993 130.627 108.736 1 110.87 0 H3CA PIO 801 D 1 
HETATM 58 H H2A PIO . . . M 4 124.939 128.561 108.495 1 110.87 0 H2A PIO 801 D 1 
HETATM 59 H H3A PIO . . . M 4 127.042 129.021 107.879 1 110.87 0 H3A PIO 801 D 1 
HETATM 60 H H4A PIO . . . M 4 125.532 128.581 105.937 1 110.87 0 H4A PIO 801 D 1 
HETATM 61 H H5A PIO . . . M 4 124.855 130.816 105.645 1 110.87 0 H5A PIO 801 D 1 
HETATM 62 H H6A PIO . . . M 4 126.352 129.873 103.425 1 110.87 0 H6A PIO 801 D 1 
HETATM 63 H H7A PIO . . . M 4 124.077 131.506 103.132 1 110.87 0 H7A PIO 801 D 1 
HETATM 64 H H8A PIO . . . M 4 124.974 130.483 101.201 1 110.87 0 H8A PIO 801 D 1 
HETATM 65 H H2AA PIO . . . M 4 124.338 129.748 107.637 1 110.87 0 H2AA PIO 801 D 1 
HETATM 66 H H3AA PIO . . . M 4 126.71 130.54 107.575 1 110.87 0 H3AA PIO 801 D 1 
HETATM 67 H H4AA PIO . . . M 4 127.032 128.992 105.637 1 110.87 0 H4AA PIO 801 D 1 
HETATM 68 H H5AA PIO . . . M 4 126.355 131.235 105.355 1 110.87 0 H5AA PIO 801 D 1 
HETATM 69 H H6AA PIO . . . M 4 124.847 129.477 103.712 1 110.87 0 H6AA PIO 801 D 1 
HETATM 70 H H7AA PIO . . . M 4 125.473 132.204 103.405 1 110.87 0 H7AA PIO 801 D 1 
HETATM 71 H H8AA PIO . . . M 4 125.088 132.058 101.079 1 110.87 0 H8AA PIO 801 D 1 
HETATM 72 H H8AB PIO . . . M 4 126.361 131.199 101.471 1 110.87 0 H8AB PIO 801 D 1 
HETATM 73 H H2B PIO . . . M 4 121.396 132.607 105.44 1 110.87 0 H2B PIO 801 D 1 
HETATM 74 H H3B PIO . . . M 4 121.362 135.233 105.437 1 110.87 0 H3B PIO 801 D 1 
HETATM 75 H H4B PIO . . . M 4 123.124 133.431 104.149 1 110.87 0 H4B PIO 801 D 1 
HETATM 76 H H5B PIO . . . M 4 120.662 133.838 103.595 1 110.87 0 H5B PIO 801 D 1 
HETATM 77 H H6B PIO . . . M 4 122.625 133.35 101.602 1 110.87 0 H6B PIO 801 D 1 
HETATM 78 H H7B PIO . . . M 4 120.267 133.81 100.936 1 110.87 0 H7B PIO 801 D 1 
HETATM 79 H H8B PIO . . . M 4 119.23 132.364 102.439 1 110.87 0 H8B PIO 801 D 1 
HETATM 80 H H2BA PIO . . . M 4 120.604 133.482 106.497 1 110.87 0 H2BA PIO 801 D 1 
HETATM 81 H H3BA PIO . . . M 4 122.771 134.9 106.075 1 110.87 0 H3BA PIO 801 D 1 
HETATM 82 H H4BA PIO . . . M 4 123.196 134.983 103.839 1 110.87 0 H4BA PIO 801 D 1 
HETATM 83 H H5BA PIO . . . M 4 121.305 134.969 102.695 1 110.87 0 H5BA PIO 801 D 1 
HETATM 84 H H6BA PIO . . . M 4 121.979 132.217 102.502 1 110.87 0 H6BA PIO 801 D 1 
HETATM 85 H H7BA PIO . . . M 4 121.007 132.596 100.237 1 110.87 0 H7BA PIO 801 D 1 
HETATM 86 H H8BA PIO . . . M 4 120.045 131.135 101.862 1 110.87 0 H8BA PIO 801 D 1 
HETATM 87 H H8BB PIO . . . M 4 118.933 131.833 100.977 1 110.87 0 H8BB PIO 801 D 1 
HETATM 88 H H2C PIO . . . M 4 122.875 129.642 109.862 1 110.87 0 H2C PIO 801 D 1 
HETATM 89 H HO2 PIO . . . M 4 127.2 130.111 113.294 1 110.87 0 HO2 PIO 801 D 1 
HETATM 90 H HO3 PIO . . . M 4 126.759 128.397 115.531 1 110.87 0 HO3 PIO 801 D 1 
HETATM 91 H HO6 PIO . . . M 4 124.341 133.794 115.758 1 110.87 0 HO6 PIO 801 D 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           91 
#