data_8J02 # _model_server_result.job_id YWvsKXsz1LXsMrjlRLLErw _model_server_result.datetime_utc '2024-11-26 14:55:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j02 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":802}' # _entry.id 8J02 # _exptl.entry_id 8J02 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 314.462 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cannabidiol _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J02 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J02 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 L N N ? 3 N N N ? 3 P N N # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id P0T _chem_comp.mon_nstd_flag . _chem_comp.name cannabidiol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "(1'R,2'R)-5'-methyl-4-pentyl-2'-(prop-1-en-2-yl)-1',2',3',4'-tetrahydro[1,1'-biphenyl]-2,6-diol" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C09 P0T sing 235 n n C23 C22 P0T sing 236 n n C22 C21 P0T sing 237 n n C09 C06 P0T sing 238 n n C09 C07 P0T doub 239 n n O01 C11 P0T sing 240 n n C06 C05 P0T sing 241 n n C07 C04 P0T sing 242 n n C21 C20 P0T sing 243 n n C20 C18 P0T sing 244 n n C16 C11 P0T doub 245 n y C16 C15 P0T sing 246 n y C11 C08 P0T sing 247 n y C18 C15 P0T sing 248 n n C15 C17 P0T doub 249 n y C08 C04 P0T sing 250 n n C08 C12 P0T doub 251 n y C04 C03 P0T sing 252 n n C17 C12 P0T sing 253 n y C05 C03 P0T sing 254 n n C12 O02 P0T sing 255 n n C03 C10 P0T sing 256 n n C10 C19 P0T doub 257 n n C10 C14 P0T sing 258 n n C13 H1 P0T sing 259 n n C13 H2 P0T sing 260 n n C13 H3 P0T sing 261 n n C14 H4 P0T sing 262 n n C14 H5 P0T sing 263 n n C14 H6 P0T sing 264 n n C03 H7 P0T sing 265 n n C04 H8 P0T sing 266 n n C05 H9 P0T sing 267 n n C05 H10 P0T sing 268 n n C06 H11 P0T sing 269 n n C06 H12 P0T sing 270 n n C07 H13 P0T sing 271 n n C16 H16 P0T sing 272 n n C17 H17 P0T sing 273 n n C18 H18 P0T sing 274 n n C18 H19 P0T sing 275 n n C19 H20 P0T sing 276 n n C19 H21 P0T sing 277 n n C20 H22 P0T sing 278 n n C20 H23 P0T sing 279 n n C21 H24 P0T sing 280 n n C21 H25 P0T sing 281 n n C22 H26 P0T sing 282 n n C22 H27 P0T sing 283 n n C23 H28 P0T sing 284 n n C23 H29 P0T sing 285 n n C23 H30 P0T sing 286 n n O01 H31 P0T sing 287 n n O02 H32 P0T sing 288 n n # _atom_sites.entry_id 8J02 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 P0T A 1 801 1 P0T LIG . J 4 PIO A 1 802 901 PIO PIP . K 4 PIO B 1 801 902 PIO PIP . L 3 P0T B 1 802 4 P0T LIG . M 4 PIO D 1 801 903 PIO PIP . N 3 P0T D 1 802 3 P0T LIG . O 4 PIO G 1 801 904 PIO PIP . P 3 P0T G 1 802 2 P0T LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 P0T . . . L 3 97.061 111.353 101.497 1 54.59 0 C10 P0T 802 B 1 HETATM 2 C C11 P0T . . . L 3 98.441 115.873 100.218 1 54.59 0 C11 P0T 802 B 1 HETATM 3 C C12 P0T . . . L 3 98.836 114.533 98.238 1 54.59 0 C12 P0T 802 B 1 HETATM 4 C C13 P0T . . . L 3 94.007 115.647 100.168 1 54.59 0 C13 P0T 802 B 1 HETATM 5 C C14 P0T . . . L 3 98.012 110.591 100.961 1 54.59 0 C14 P0T 802 B 1 HETATM 6 C C03 P0T . . . L 3 97.326 112.896 101.632 1 54.59 0 C03 P0T 802 B 1 HETATM 7 C C04 P0T . . . L 3 97.415 113.502 100.08 1 54.59 0 C04 P0T 802 B 1 HETATM 8 C C05 P0T . . . L 3 96.416 113.499 102.459 1 54.59 0 C05 P0T 802 B 1 HETATM 9 C C06 P0T . . . L 3 94.967 113.841 101.741 1 54.59 0 C06 P0T 802 B 1 HETATM 10 C C07 P0T . . . L 3 96.326 114.34 99.621 1 54.59 0 C07 P0T 802 B 1 HETATM 11 C C08 P0T . . . L 3 98.259 114.684 99.5 1 54.59 0 C08 P0T 802 B 1 HETATM 12 C C09 P0T . . . L 3 95.161 114.737 100.633 1 54.59 0 C09 P0T 802 B 1 HETATM 13 C C15 P0T . . . L 3 99.782 116.754 98.401 1 54.59 0 C15 P0T 802 B 1 HETATM 14 C C16 P0T . . . L 3 99.204 116.91 99.666 1 54.59 0 C16 P0T 802 B 1 HETATM 15 C C17 P0T . . . L 3 99.599 115.566 97.689 1 54.59 0 C17 P0T 802 B 1 HETATM 16 C C18 P0T . . . L 3 100.63 117.888 97.773 1 54.59 0 C18 P0T 802 B 1 HETATM 17 C C19 P0T . . . L 3 95.737 110.682 101.949 1 54.59 0 C19 P0T 802 B 1 HETATM 18 C C20 P0T . . . L 3 99.749 119.011 97.187 1 54.59 0 C20 P0T 802 B 1 HETATM 19 C C21 P0T . . . L 3 99.278 118.704 95.746 1 54.59 0 C21 P0T 802 B 1 HETATM 20 C C22 P0T . . . L 3 98.472 119.873 95.133 1 54.59 0 C22 P0T 802 B 1 HETATM 21 C C23 P0T . . . L 3 97.032 119.453 94.759 1 54.59 0 C23 P0T 802 B 1 HETATM 22 O O01 P0T . . . L 3 97.86 116.028 101.488 1 54.59 0 O01 P0T 802 B 1 HETATM 23 O O02 P0T . . . L 3 98.654 113.338 97.518 1 54.59 0 O02 P0T 802 B 1 HETATM 24 H H1 P0T . . . L 3 93.668 115.33 99.352 1 54.59 0 H1 P0T 802 B 1 HETATM 25 H H2 P0T . . . L 3 94.325 116.524 100.057 1 54.59 0 H2 P0T 802 B 1 HETATM 26 H H3 P0T . . . L 3 93.325 115.64 100.814 1 54.59 0 H3 P0T 802 B 1 HETATM 27 H H4 P0T . . . L 3 97.88 109.676 100.869 1 54.59 0 H4 P0T 802 B 1 HETATM 28 H H5 P0T . . . L 3 98.814 110.975 100.683 1 54.59 0 H5 P0T 802 B 1 HETATM 29 H H7 P0T . . . L 3 98.172 113.005 102.024 1 54.59 0 H7 P0T 802 B 1 HETATM 30 H H8 P0T . . . L 3 97.489 112.771 99.495 1 54.59 0 H8 P0T 802 B 1 HETATM 31 H H9 P0T . . . L 3 96.266 112.951 103.206 1 54.59 0 H9 P0T 802 B 1 HETATM 32 H H10 P0T . . . L 3 96.786 114.309 102.76 1 54.59 0 H10 P0T 802 B 1 HETATM 33 H H11 P0T . . . L 3 94.398 114.246 102.37 1 54.59 0 H11 P0T 802 B 1 HETATM 34 H H12 P0T . . . L 3 94.575 113.049 101.429 1 54.59 0 H12 P0T 802 B 1 HETATM 35 H H13 P0T . . . L 3 96.272 114.589 98.726 1 54.59 0 H13 P0T 802 B 1 HETATM 36 H H16 P0T . . . L 3 99.327 117.7 100.139 1 54.59 0 H16 P0T 802 B 1 HETATM 37 H H17 P0T . . . L 3 99.981 115.464 96.849 1 54.59 0 H17 P0T 802 B 1 HETATM 38 H H18 P0T . . . L 3 101.188 118.253 98.433 1 54.59 0 H18 P0T 802 B 1 HETATM 39 H H19 P0T . . . L 3 101.162 117.528 97.088 1 54.59 0 H19 P0T 802 B 1 HETATM 40 H H20 P0T . . . L 3 95.852 109.751 101.961 1 54.59 0 H20 P0T 802 B 1 HETATM 41 H H21 P0T . . . L 3 95.052 110.901 101.345 1 54.59 0 H21 P0T 802 B 1 HETATM 42 H H22 P0T . . . L 3 98.991 119.114 97.728 1 54.59 0 H22 P0T 802 B 1 HETATM 43 H H23 P0T . . . L 3 100.238 119.814 97.186 1 54.59 0 H23 P0T 802 B 1 HETATM 44 H H24 P0T . . . L 3 98.736 117.937 95.761 1 54.59 0 H24 P0T 802 B 1 HETATM 45 H H25 P0T . . . L 3 100.027 118.535 95.21 1 54.59 0 H25 P0T 802 B 1 HETATM 46 H H26 P0T . . . L 3 98.434 120.576 95.755 1 54.59 0 H26 P0T 802 B 1 HETATM 47 H H27 P0T . . . L 3 98.911 120.174 94.359 1 54.59 0 H27 P0T 802 B 1 HETATM 48 H H28 P0T . . . L 3 97.059 118.843 94.046 1 54.59 0 H28 P0T 802 B 1 HETATM 49 H H29 P0T . . . L 3 96.54 120.211 94.503 1 54.59 0 H29 P0T 802 B 1 HETATM 50 H H30 P0T . . . L 3 96.622 119.05 95.501 1 54.59 0 H30 P0T 802 B 1 HETATM 51 H H31 P0T . . . L 3 98.454 115.996 102.07 1 54.59 0 H31 P0T 802 B 1 HETATM 52 H H32 P0T . . . L 3 97.867 113.29 97.25 1 54.59 0 H32 P0T 802 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 133 _model_server_stats.query_time_ms 1297 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 52 #