data_8J02 # _model_server_result.job_id X3vw72GJ1c_oWEe2VZg2vg _model_server_result.datetime_utc '2024-11-23 01:31:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j02 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":802}' # _entry.id 8J02 # _exptl.entry_id 8J02 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 314.462 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cannabidiol _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J02 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J02 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 L N N ? 3 N N N ? 3 P N N # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id P0T _chem_comp.mon_nstd_flag . _chem_comp.name cannabidiol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "(1'R,2'R)-5'-methyl-4-pentyl-2'-(prop-1-en-2-yl)-1',2',3',4'-tetrahydro[1,1'-biphenyl]-2,6-diol" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C09 P0T sing 235 n n C23 C22 P0T sing 236 n n C22 C21 P0T sing 237 n n C09 C06 P0T sing 238 n n C09 C07 P0T doub 239 n n O01 C11 P0T sing 240 n n C06 C05 P0T sing 241 n n C07 C04 P0T sing 242 n n C21 C20 P0T sing 243 n n C20 C18 P0T sing 244 n n C16 C11 P0T doub 245 n y C16 C15 P0T sing 246 n y C11 C08 P0T sing 247 n y C18 C15 P0T sing 248 n n C15 C17 P0T doub 249 n y C08 C04 P0T sing 250 n n C08 C12 P0T doub 251 n y C04 C03 P0T sing 252 n n C17 C12 P0T sing 253 n y C05 C03 P0T sing 254 n n C12 O02 P0T sing 255 n n C03 C10 P0T sing 256 n n C10 C19 P0T doub 257 n n C10 C14 P0T sing 258 n n C13 H1 P0T sing 259 n n C13 H2 P0T sing 260 n n C13 H3 P0T sing 261 n n C14 H4 P0T sing 262 n n C14 H5 P0T sing 263 n n C14 H6 P0T sing 264 n n C03 H7 P0T sing 265 n n C04 H8 P0T sing 266 n n C05 H9 P0T sing 267 n n C05 H10 P0T sing 268 n n C06 H11 P0T sing 269 n n C06 H12 P0T sing 270 n n C07 H13 P0T sing 271 n n C16 H16 P0T sing 272 n n C17 H17 P0T sing 273 n n C18 H18 P0T sing 274 n n C18 H19 P0T sing 275 n n C19 H20 P0T sing 276 n n C19 H21 P0T sing 277 n n C20 H22 P0T sing 278 n n C20 H23 P0T sing 279 n n C21 H24 P0T sing 280 n n C21 H25 P0T sing 281 n n C22 H26 P0T sing 282 n n C22 H27 P0T sing 283 n n C23 H28 P0T sing 284 n n C23 H29 P0T sing 285 n n C23 H30 P0T sing 286 n n O01 H31 P0T sing 287 n n O02 H32 P0T sing 288 n n # _atom_sites.entry_id 8J02 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 P0T A 1 801 1 P0T LIG . J 4 PIO A 1 802 901 PIO PIP . K 4 PIO B 1 801 902 PIO PIP . L 3 P0T B 1 802 4 P0T LIG . M 4 PIO D 1 801 903 PIO PIP . N 3 P0T D 1 802 3 P0T LIG . O 4 PIO G 1 801 904 PIO PIP . P 3 P0T G 1 802 2 P0T LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 P0T . . . P 3 126.144 111.859 101.499 1 54.69 0 C10 P0T 802 G 1 HETATM 2 C C11 P0T . . . P 3 124.762 107.339 100.219 1 54.69 0 C11 P0T 802 G 1 HETATM 3 C C12 P0T . . . P 3 124.368 108.679 98.238 1 54.69 0 C12 P0T 802 G 1 HETATM 4 C C13 P0T . . . P 3 129.198 107.567 100.167 1 54.69 0 C13 P0T 802 G 1 HETATM 5 C C14 P0T . . . P 3 125.194 112.621 100.96 1 54.69 0 C14 P0T 802 G 1 HETATM 6 C C03 P0T . . . P 3 125.877 110.316 101.634 1 54.69 0 C03 P0T 802 G 1 HETATM 7 C C04 P0T . . . P 3 125.788 109.711 100.083 1 54.69 0 C04 P0T 802 G 1 HETATM 8 C C05 P0T . . . P 3 126.786 109.712 102.461 1 54.69 0 C05 P0T 802 G 1 HETATM 9 C C06 P0T . . . P 3 128.236 109.371 101.744 1 54.69 0 C06 P0T 802 G 1 HETATM 10 C C07 P0T . . . P 3 126.878 108.874 99.621 1 54.69 0 C07 P0T 802 G 1 HETATM 11 C C08 P0T . . . P 3 124.945 108.529 99.5 1 54.69 0 C08 P0T 802 G 1 HETATM 12 C C09 P0T . . . P 3 128.042 108.475 100.633 1 54.69 0 C09 P0T 802 G 1 HETATM 13 C C15 P0T . . . P 3 123.423 106.458 98.402 1 54.69 0 C15 P0T 802 G 1 HETATM 14 C C16 P0T . . . P 3 124 106.303 99.667 1 54.69 0 C16 P0T 802 G 1 HETATM 15 C C17 P0T . . . P 3 123.606 107.646 97.689 1 54.69 0 C17 P0T 802 G 1 HETATM 16 C C18 P0T . . . P 3 122.574 105.325 97.772 1 54.69 0 C18 P0T 802 G 1 HETATM 17 C C19 P0T . . . P 3 127.466 112.529 101.955 1 54.69 0 C19 P0T 802 G 1 HETATM 18 C C20 P0T . . . P 3 123.456 104.201 97.186 1 54.69 0 C20 P0T 802 G 1 HETATM 19 C C21 P0T . . . P 3 123.924 104.509 95.743 1 54.69 0 C21 P0T 802 G 1 HETATM 20 C C22 P0T . . . P 3 124.732 103.341 95.13 1 54.69 0 C22 P0T 802 G 1 HETATM 21 C C23 P0T . . . P 3 126.173 103.762 94.759 1 54.69 0 C23 P0T 802 G 1 HETATM 22 O O01 P0T . . . P 3 125.342 107.185 101.489 1 54.69 0 O01 P0T 802 G 1 HETATM 23 O O02 P0T . . . P 3 124.55 109.875 97.519 1 54.69 0 O02 P0T 802 G 1 HETATM 24 H H1 P0T . . . P 3 129.535 107.886 99.351 1 54.69 0 H1 P0T 802 G 1 HETATM 25 H H2 P0T . . . P 3 128.88 106.691 100.056 1 54.69 0 H2 P0T 802 G 1 HETATM 26 H H3 P0T . . . P 3 129.88 107.574 100.813 1 54.69 0 H3 P0T 802 G 1 HETATM 27 H H4 P0T . . . P 3 125.327 113.537 100.867 1 54.69 0 H4 P0T 802 G 1 HETATM 28 H H5 P0T . . . P 3 124.393 112.238 100.68 1 54.69 0 H5 P0T 802 G 1 HETATM 29 H H7 P0T . . . P 3 125.031 110.207 102.026 1 54.69 0 H7 P0T 802 G 1 HETATM 30 H H8 P0T . . . P 3 125.714 110.442 99.497 1 54.69 0 H8 P0T 802 G 1 HETATM 31 H H9 P0T . . . P 3 126.936 110.26 103.209 1 54.69 0 H9 P0T 802 G 1 HETATM 32 H H10 P0T . . . P 3 126.417 108.903 102.759 1 54.69 0 H10 P0T 802 G 1 HETATM 33 H H11 P0T . . . P 3 128.804 108.965 102.372 1 54.69 0 H11 P0T 802 G 1 HETATM 34 H H12 P0T . . . P 3 128.629 110.163 101.432 1 54.69 0 H12 P0T 802 G 1 HETATM 35 H H13 P0T . . . P 3 126.931 108.624 98.726 1 54.69 0 H13 P0T 802 G 1 HETATM 36 H H16 P0T . . . P 3 123.876 105.512 100.14 1 54.69 0 H16 P0T 802 G 1 HETATM 37 H H17 P0T . . . P 3 123.223 107.749 96.849 1 54.69 0 H17 P0T 802 G 1 HETATM 38 H H18 P0T . . . P 3 122.017 104.959 98.433 1 54.69 0 H18 P0T 802 G 1 HETATM 39 H H19 P0T . . . P 3 122.041 105.685 97.088 1 54.69 0 H19 P0T 802 G 1 HETATM 40 H H20 P0T . . . P 3 127.35 113.461 101.967 1 54.69 0 H20 P0T 802 G 1 HETATM 41 H H21 P0T . . . P 3 128.153 112.311 101.353 1 54.69 0 H21 P0T 802 G 1 HETATM 42 H H22 P0T . . . P 3 124.214 104.1 97.725 1 54.69 0 H22 P0T 802 G 1 HETATM 43 H H23 P0T . . . P 3 122.968 103.398 97.186 1 54.69 0 H23 P0T 802 G 1 HETATM 44 H H24 P0T . . . P 3 124.463 105.277 95.758 1 54.69 0 H24 P0T 802 G 1 HETATM 45 H H25 P0T . . . P 3 123.174 104.675 95.208 1 54.69 0 H25 P0T 802 G 1 HETATM 46 H H26 P0T . . . P 3 124.769 102.638 95.752 1 54.69 0 H26 P0T 802 G 1 HETATM 47 H H27 P0T . . . P 3 124.294 103.041 94.356 1 54.69 0 H27 P0T 802 G 1 HETATM 48 H H28 P0T . . . P 3 126.147 104.373 94.048 1 54.69 0 H28 P0T 802 G 1 HETATM 49 H H29 P0T . . . P 3 126.664 103.003 94.505 1 54.69 0 H29 P0T 802 G 1 HETATM 50 H H30 P0T . . . P 3 126.581 104.165 95.503 1 54.69 0 H30 P0T 802 G 1 HETATM 51 H H31 P0T . . . P 3 124.75 107.225 102.072 1 54.69 0 H31 P0T 802 G 1 HETATM 52 H H32 P0T . . . P 3 125.338 109.924 97.255 1 54.69 0 H32 P0T 802 G 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 52 #