data_8J0G
#
_model_server_result.job_id            yDne3wsfeIMbSXArX2uxuA 
_model_server_result.datetime_utc      '2024-10-10 19:21:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8j0g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":803}' 
#
_entry.id    8J0G 
#
_exptl.entry_id    8J0G 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O ARG 236 B ARG 236 1_555 E MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? 
metalc ? metalc2 E MG MG . B MG 801 1_555 G O2A ATP . B ATP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? 
metalc ? metalc3 E MG MG . B MG 801 1_555 G O3B ATP . B ATP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8J0G 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG B 1 801 301 MG MG . 
F 3 GGL B 1 802 302 GGL GGL . 
G 4 ATP B 1 803 303 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . G 4 144.664 107.489 133.582 1 49.29 ? PG ATP 803 B 1 
HETATM 2 O O1G ATP . . . G 4 144.444 108.262 132.305 1 49.29 ? O1G ATP 803 B 1 
HETATM 3 O O2G ATP . . . G 4 144.419 106.007 133.44 1 49.29 ? O2G ATP 803 B 1 
HETATM 4 O O3G ATP . . . G 4 144.032 108.105 134.805 1 49.29 ? O3G ATP 803 B 1 
HETATM 5 P PB ATP . . . G 4 147.086 108.85 133.232 1 49.29 ? PB ATP 803 B 1 
HETATM 6 O O1B ATP . . . G 4 147.558 108.434 131.86 1 49.29 ? O1B ATP 803 B 1 
HETATM 7 O O2B ATP . . . G 4 146.258 110.102 133.394 1 49.29 ? O2B ATP 803 B 1 
HETATM 8 O O3B ATP . . . G 4 146.248 107.623 133.859 1 49.29 ? O3B ATP 803 B 1 
HETATM 9 P PA ATP . . . G 4 149.317 107.75 134.529 1 49.29 ? PA ATP 803 B 1 
HETATM 10 O O1A ATP . . . G 4 149.609 107.013 133.247 1 49.29 ? O1A ATP 803 B 1 
HETATM 11 O O2A ATP . . . G 4 148.715 107.015 135.701 1 49.29 ? O2A ATP 803 B 1 
HETATM 12 O O3A ATP . . . G 4 148.361 108.999 134.2 1 49.29 ? O3A ATP 803 B 1 
HETATM 13 O O5' ATP . . . G 4 150.669 108.477 135.007 1 49.29 ? O5' ATP 803 B 1 
HETATM 14 C C5' ATP . . . G 4 151.636 107.776 135.782 1 49.29 ? C5' ATP 803 B 1 
HETATM 15 C C4' ATP . . . G 4 152.492 108.792 136.53 1 49.29 ? C4' ATP 803 B 1 
HETATM 16 O O4' ATP . . . G 4 153.466 108.138 137.349 1 49.29 ? O4' ATP 803 B 1 
HETATM 17 C C3' ATP . . . G 4 153.233 109.7 135.565 1 49.29 ? C3' ATP 803 B 1 
HETATM 18 O O3' ATP . . . G 4 152.7 111.026 135.627 1 49.29 ? O3' ATP 803 B 1 
HETATM 19 C C2' ATP . . . G 4 154.684 109.662 135.991 1 49.29 ? C2' ATP 803 B 1 
HETATM 20 O O2' ATP . . . G 4 155.108 110.938 136.471 1 49.29 ? O2' ATP 803 B 1 
HETATM 21 C C1' ATP . . . G 4 154.781 108.634 137.102 1 49.29 ? C1' ATP 803 B 1 
HETATM 22 N N9 ATP . . . G 4 155.631 107.496 136.687 1 49.29 ? N9 ATP 803 B 1 
HETATM 23 C C8 ATP . . . G 4 155.472 106.231 137.118 1 49.29 ? C8 ATP 803 B 1 
HETATM 24 N N7 ATP . . . G 4 156.391 105.405 136.561 1 49.29 ? N7 ATP 803 B 1 
HETATM 25 C C5 ATP . . . G 4 157.162 106.151 135.751 1 49.29 ? C5 ATP 803 B 1 
HETATM 26 C C6 ATP . . . G 4 158.313 105.9 134.855 1 49.29 ? C6 ATP 803 B 1 
HETATM 27 N N6 ATP . . . G 4 158.839 104.659 134.727 1 49.29 ? N6 ATP 803 B 1 
HETATM 28 N N1 ATP . . . G 4 158.827 106.953 134.178 1 49.29 ? N1 ATP 803 B 1 
HETATM 29 C C2 ATP . . . G 4 158.323 108.193 134.306 1 49.29 ? C2 ATP 803 B 1 
HETATM 30 N N3 ATP . . . G 4 157.276 108.487 135.097 1 49.29 ? N3 ATP 803 B 1 
HETATM 31 C C4 ATP . . . G 4 156.661 107.53 135.836 1 49.29 ? C4 ATP 803 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#