data_8J0J
#
_model_server_result.job_id            5P0PVmEFmFV8M_QUlvk5Gg 
_model_server_result.datetime_utc      '2024-11-08 15:02:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8j0j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":901}' 
#
_entry.id    8J0J 
#
_exptl.entry_id    8J0J 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8J0J 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8J0J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 H N N 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 374 n n 
CBA CAB Y01 sing 375 n n 
CBA CAN Y01 sing 376 n n 
CAN CAJ Y01 sing 377 n n 
CAJ CAO Y01 sing 378 n n 
CAO CBB Y01 sing 379 n n 
CBB CAC Y01 sing 380 n n 
CBB CBE Y01 sing 381 n n 
CBE CAP Y01 sing 382 n n 
CBE CBI Y01 sing 383 n n 
CAP CAQ Y01 sing 384 n n 
CAQ CBG Y01 sing 385 n n 
CBG CBI Y01 sing 386 n n 
CBG CBD Y01 sing 387 n n 
CBI CAE Y01 sing 388 n n 
CBI CAU Y01 sing 389 n n 
CAU CAS Y01 sing 390 n n 
CAS CBF Y01 sing 391 n n 
CBF CBD Y01 sing 392 n n 
CBF CBH Y01 sing 393 n n 
CBD CAK Y01 sing 394 n n 
CAK CAI Y01 sing 395 n n 
CAI CAZ Y01 doub 396 n n 
CAZ CAV Y01 sing 397 n n 
CAZ CBH Y01 sing 398 n n 
CAV CBC Y01 sing 399 n n 
CBH CAD Y01 sing 400 n n 
CBH CAT Y01 sing 401 n n 
CAT CAR Y01 sing 402 n n 
CAR CBC Y01 sing 403 n n 
CBC OAW Y01 sing 404 n n 
OAW CAY Y01 sing 405 n n 
CAY OAG Y01 doub 406 n n 
CAY CAM Y01 sing 407 n n 
CAM CAL Y01 sing 408 n n 
CAL CAX Y01 sing 409 n n 
CAX OAH Y01 sing 410 n n 
CAX OAF Y01 doub 411 n n 
CAA HAA1 Y01 sing 412 n n 
CAA HAA2 Y01 sing 413 n n 
CAA HAA3 Y01 sing 414 n n 
CBA HBA Y01 sing 415 n n 
CAB HAB1 Y01 sing 416 n n 
CAB HAB2 Y01 sing 417 n n 
CAB HAB3 Y01 sing 418 n n 
CAN HAN1 Y01 sing 419 n n 
CAN HAN2 Y01 sing 420 n n 
CAJ HAJ1 Y01 sing 421 n n 
CAJ HAJ2 Y01 sing 422 n n 
CAO HAO1 Y01 sing 423 n n 
CAO HAO2 Y01 sing 424 n n 
CBB HBB Y01 sing 425 n n 
CAC HAC1 Y01 sing 426 n n 
CAC HAC2 Y01 sing 427 n n 
CAC HAC3 Y01 sing 428 n n 
CBE HBE Y01 sing 429 n n 
CAP HAP1 Y01 sing 430 n n 
CAP HAP2 Y01 sing 431 n n 
CAQ HAQ1 Y01 sing 432 n n 
CAQ HAQ2 Y01 sing 433 n n 
CBG HBG Y01 sing 434 n n 
CBD HBD Y01 sing 435 n n 
CAE HAE1 Y01 sing 436 n n 
CAE HAE2 Y01 sing 437 n n 
CAE HAE3 Y01 sing 438 n n 
CAU HAU1 Y01 sing 439 n n 
CAU HAU2 Y01 sing 440 n n 
CAS HAS1 Y01 sing 441 n n 
CAS HAS2 Y01 sing 442 n n 
CBF HBF Y01 sing 443 n n 
CAK HAK1 Y01 sing 444 n n 
CAK HAK2 Y01 sing 445 n n 
CAI HAI Y01 sing 446 n n 
CAV HAV1 Y01 sing 447 n n 
CAV HAV2 Y01 sing 448 n n 
CBC HBC Y01 sing 449 n n 
CAD HAD1 Y01 sing 450 n n 
CAD HAD2 Y01 sing 451 n n 
CAD HAD3 Y01 sing 452 n n 
CAT HAT1 Y01 sing 453 n n 
CAT HAT2 Y01 sing 454 n n 
CAR HAR1 Y01 sing 455 n n 
CAR HAR2 Y01 sing 456 n n 
CAM HAM1 Y01 sing 457 n n 
CAM HAM2 Y01 sing 458 n n 
CAL HAL1 Y01 sing 459 n n 
CAL HAL2 Y01 sing 460 n n 
OAH HAH Y01 sing 461 n n 
#
_atom_sites.entry_id                     8J0J 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 CL A 1 901 839 CL CL . 
E 3 Y01 A 1 902 840 Y01 Y01 . 
F 3 Y01 B 1 901 840 Y01 Y01 . 
G 2 CL B 1 902 839 CL CL . 
H 3 Y01 C 1 901 840 Y01 Y01 . 
I 2 CL C 1 902 839 CL CL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . F 3 134.052 134.714 128.275 1 16.35 ? CAA Y01 901 B 1 
HETATM 2 C CBA Y01 . . . F 3 133.165 135.642 129.106 1 19.67 ? CBA Y01 901 B 1 
HETATM 3 C CAB Y01 . . . F 3 133.47 137.09 128.792 1 15.2 ? CAB Y01 901 B 1 
HETATM 4 C CAN Y01 . . . F 3 131.661 135.295 128.974 1 13.91 ? CAN Y01 901 B 1 
HETATM 5 C CAJ Y01 . . . F 3 130.947 135.713 127.676 1 19.37 ? CAJ Y01 901 B 1 
HETATM 6 C CAO Y01 . . . F 3 130.697 134.658 126.577 1 14.88 ? CAO Y01 901 B 1 
HETATM 7 C CBB Y01 . . . F 3 130.232 133.289 127.062 1 20.19 ? CBB Y01 901 B 1 
HETATM 8 C CAC Y01 . . . F 3 129.146 133.482 128.108 1 14.93 ? CAC Y01 901 B 1 
HETATM 9 C CBE Y01 . . . F 3 129.868 132.21 125.981 1 18.91 ? CBE Y01 901 B 1 
HETATM 10 C CAP Y01 . . . F 3 129.284 130.877 126.492 1 17.65 ? CAP Y01 901 B 1 
HETATM 11 C CAQ Y01 . . . F 3 128.113 130.508 125.633 1 17.12 ? CAQ Y01 901 B 1 
HETATM 12 C CBG Y01 . . . F 3 128.369 131.301 124.389 1 13.96 ? CBG Y01 901 B 1 
HETATM 13 C CBI Y01 . . . F 3 128.862 132.629 124.912 1 14.57 ? CBI Y01 901 B 1 
HETATM 14 C CAE Y01 . . . F 3 127.712 133.476 125.458 1 19.33 ? CAE Y01 901 B 1 
HETATM 15 C CAU Y01 . . . F 3 129.469 133.258 123.685 1 18.5 ? CAU Y01 901 B 1 
HETATM 16 C CAS Y01 . . . F 3 128.485 133.345 122.547 1 18.63 ? CAS Y01 901 B 1 
HETATM 17 C CBF Y01 . . . F 3 127.903 132.061 122.178 1 13.15 ? CBF Y01 901 B 1 
HETATM 18 C CBD Y01 . . . F 3 127.288 131.528 123.322 1 14.34 ? CBD Y01 901 B 1 
HETATM 19 C CAK Y01 . . . F 3 126.623 130.264 123.113 1 17.54 ? CAK Y01 901 B 1 
HETATM 20 C CAI Y01 . . . F 3 126.246 129.756 121.772 1 16.45 ? CAI Y01 901 B 1 
HETATM 21 C CAZ Y01 . . . F 3 126.521 130.623 120.742 1 11.22 ? CAZ Y01 901 B 1 
HETATM 22 C CAV Y01 . . . F 3 126.104 130.088 119.462 1 13.94 ? CAV Y01 901 B 1 
HETATM 23 C CBH Y01 . . . F 3 127.118 131.963 120.935 1 14.5 ? CBH Y01 901 B 1 
HETATM 24 C CAD Y01 . . . F 3 125.849 132.777 121.027 1 18.2 ? CAD Y01 901 B 1 
HETATM 25 C CAT Y01 . . . F 3 127.849 132.307 119.652 1 19.19 ? CAT Y01 901 B 1 
HETATM 26 C CAR Y01 . . . F 3 127.28 131.661 118.416 1 15.23 ? CAR Y01 901 B 1 
HETATM 27 C CBC Y01 . . . F 3 127.292 130.205 118.668 1 16.17 ? CBC Y01 901 B 1 
HETATM 28 O OAW Y01 . . . F 3 127.277 129.27 117.63 1 22.89 ? OAW Y01 901 B 1 
HETATM 29 C CAY Y01 . . . F 3 126.241 129.29 116.749 1 20.3 ? CAY Y01 901 B 1 
HETATM 30 O OAG Y01 . . . F 3 125.42 128.418 116.917 1 20.52 ? OAG Y01 901 B 1 
HETATM 31 C CAM Y01 . . . F 3 126.242 130.356 115.694 1 16.39 ? CAM Y01 901 B 1 
HETATM 32 C CAL Y01 . . . F 3 125.03 131.257 115.802 1 17.2 ? CAL Y01 901 B 1 
HETATM 33 C CAX Y01 . . . F 3 124.993 132.377 114.758 1 17.72 ? CAX Y01 901 B 1 
HETATM 34 O OAH Y01 . . . F 3 125.779 133.331 114.915 1 19.31 ? OAH Y01 901 B 1 
HETATM 35 O OAF Y01 . . . F 3 124.18 132.214 113.833 1 14.89 ? OAF Y01 901 B 1 
HETATM 36 H HAA1 Y01 . . . F 3 133.474 134.042 127.625 1 15.27 ? HAA1 Y01 901 B 1 
HETATM 37 H HAA2 Y01 . . . F 3 134.752 135.223 127.61 1 15.45 ? HAA2 Y01 901 B 1 
HETATM 38 H HAA3 Y01 . . . F 3 134.673 134.031 128.868 1 15.12 ? HAA3 Y01 901 B 1 
HETATM 39 H HBA Y01 . . . F 3 133.462 135.468 130.166 1 16.1 ? HBA Y01 901 B 1 
HETATM 40 H HAB1 Y01 . . . F 3 133.865 137.23 127.782 1 15.93 ? HAB1 Y01 901 B 1 
HETATM 41 H HAB2 Y01 . . . F 3 132.588 137.733 128.877 1 14.78 ? HAB2 Y01 901 B 1 
HETATM 42 H HAB3 Y01 . . . F 3 134.229 137.538 129.449 1 15.09 ? HAB3 Y01 901 B 1 
HETATM 43 H HAN1 Y01 . . . F 3 131.13 135.737 129.831 1 14.85 ? HAN1 Y01 901 B 1 
HETATM 44 H HAN2 Y01 . . . F 3 131.56 134.214 129.132 1 14.54 ? HAN2 Y01 901 B 1 
HETATM 45 H HAJ1 Y01 . . . F 3 129.999 136.157 127.961 1 15.62 ? HAJ1 Y01 901 B 1 
HETATM 46 H HAJ2 Y01 . . . F 3 131.461 136.579 127.227 1 15.93 ? HAJ2 Y01 901 B 1 
HETATM 47 H HAO1 Y01 . . . F 3 131.632 134.511 126.003 1 14.92 ? HAO1 Y01 901 B 1 
HETATM 48 H HAO2 Y01 . . . F 3 130.015 135.061 125.825 1 14.65 ? HAO2 Y01 901 B 1 
HETATM 49 H HBB Y01 . . . F 3 131.105 132.836 127.583 1 15.74 ? HBB Y01 901 B 1 
HETATM 50 H HAC1 Y01 . . . F 3 128.328 132.79 127.953 1 13.93 ? HAC1 Y01 901 B 1 
HETATM 51 H HAC2 Y01 . . . F 3 129.515 133.345 129.124 1 14.37 ? HAC2 Y01 901 B 1 
HETATM 52 H HAC3 Y01 . . . F 3 128.641 134.448 128.128 1 14.8 ? HAC3 Y01 901 B 1 
HETATM 53 H HBE Y01 . . . F 3 130.823 131.951 125.474 1 15.2 ? HBE Y01 901 B 1 
HETATM 54 H HAP1 Y01 . . . F 3 129.003 130.883 127.548 1 15.05 ? HAP1 Y01 901 B 1 
HETATM 55 H HAP2 Y01 . . . F 3 130.026 130.074 126.486 1 15.43 ? HAP2 Y01 901 B 1 
HETATM 56 H HAQ1 Y01 . . . F 3 128.055 129.421 125.475 1 15.43 ? HAQ1 Y01 901 B 1 
HETATM 57 H HAQ2 Y01 . . . F 3 127.126 130.713 126.097 1 14.52 ? HAQ2 Y01 901 B 1 
HETATM 58 H HBG Y01 . . . F 3 129.188 130.744 123.882 1 14.9 ? HBG Y01 901 B 1 
HETATM 59 H HBD Y01 . . . F 3 126.504 132.228 123.679 1 14.38 ? HBD Y01 901 B 1 
HETATM 60 H HAE1 Y01 . . . F 3 126.986 133.858 124.755 1 15.16 ? HAE1 Y01 901 B 1 
HETATM 61 H HAE2 Y01 . . . F 3 127.069 132.964 126.182 1 14.41 ? HAE2 Y01 901 B 1 
HETATM 62 H HAE3 Y01 . . . F 3 128.062 134.372 125.964 1 15.22 ? HAE3 Y01 901 B 1 
HETATM 63 H HAU1 Y01 . . . F 3 130.355 132.68 123.349 1 15.67 ? HAU1 Y01 901 B 1 
HETATM 64 H HAU2 Y01 . . . F 3 129.924 134.227 123.922 1 15.16 ? HAU2 Y01 901 B 1 
HETATM 65 H HAS1 Y01 . . . F 3 128.992 133.812 121.69 1 15.47 ? HAS1 Y01 901 B 1 
HETATM 66 H HAS2 Y01 . . . F 3 127.704 134.084 122.785 1 15.62 ? HAS2 Y01 901 B 1 
HETATM 67 H HBF Y01 . . . F 3 128.763 131.489 121.896 1 15.25 ? HBF Y01 901 B 1 
HETATM 68 H HAK1 Y01 . . . F 3 125.688 130.183 123.646 1 15.23 ? HAK1 Y01 901 B 1 
HETATM 69 H HAK2 Y01 . . . F 3 127.277 129.468 123.525 1 15.46 ? HAK2 Y01 901 B 1 
HETATM 70 H HAI Y01 . . . F 3 125.803 128.791 121.72 1 15.67 ? HAI Y01 901 B 1 
HETATM 71 H HAV1 Y01 . . . F 3 125.624 129.116 119.565 1 14.28 ? HAV1 Y01 901 B 1 
HETATM 72 H HAV2 Y01 . . . F 3 125.183 130.617 119.115 1 14.5 ? HAV2 Y01 901 B 1 
HETATM 73 H HBC Y01 . . . F 3 128.105 129.898 119.337 1 15.19 ? HBC Y01 901 B 1 
HETATM 74 H HAD1 Y01 . . . F 3 125.731 133.273 121.993 1 14.47 ? HAD1 Y01 901 B 1 
HETATM 75 H HAD2 Y01 . . . F 3 125.809 133.568 120.293 1 14.69 ? HAD2 Y01 901 B 1 
HETATM 76 H HAD3 Y01 . . . F 3 124.938 132.183 120.921 1 14.11 ? HAD3 Y01 901 B 1 
HETATM 77 H HAT1 Y01 . . . F 3 127.887 133.393 119.484 1 15.91 ? HAT1 Y01 901 B 1 
HETATM 78 H HAT2 Y01 . . . F 3 128.909 132.008 119.766 1 15.9 ? HAT2 Y01 901 B 1 
HETATM 79 H HAR1 Y01 . . . F 3 126.277 132.057 118.242 1 14.69 ? HAR1 Y01 901 B 1 
HETATM 80 H HAR2 Y01 . . . F 3 127.839 131.897 117.51 1 15.16 ? HAR2 Y01 901 B 1 
HETATM 81 H HAM1 Y01 . . . F 3 126.244 129.866 114.702 1 15.18 ? HAM1 Y01 901 B 1 
HETATM 82 H HAM2 Y01 . . . F 3 127.167 130.952 115.692 1 14.43 ? HAM2 Y01 901 B 1 
HETATM 83 H HAL1 Y01 . . . F 3 124.113 130.685 115.692 1 14.06 ? HAL1 Y01 901 B 1 
HETATM 84 H HAL2 Y01 . . . F 3 124.931 131.688 116.799 1 14.6 ? HAL2 Y01 901 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           84 
#