data_8J0J
#
_model_server_result.job_id            C83F74qOOUIGc0HaBy0f7A 
_model_server_result.datetime_utc      '2024-11-08 14:57:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8j0j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":902}' 
#
_entry.id    8J0J 
#
_exptl.entry_id    8J0J 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8J0J 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8J0J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 H N N 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 374 n n 
CBA CAB Y01 sing 375 n n 
CBA CAN Y01 sing 376 n n 
CAN CAJ Y01 sing 377 n n 
CAJ CAO Y01 sing 378 n n 
CAO CBB Y01 sing 379 n n 
CBB CAC Y01 sing 380 n n 
CBB CBE Y01 sing 381 n n 
CBE CAP Y01 sing 382 n n 
CBE CBI Y01 sing 383 n n 
CAP CAQ Y01 sing 384 n n 
CAQ CBG Y01 sing 385 n n 
CBG CBI Y01 sing 386 n n 
CBG CBD Y01 sing 387 n n 
CBI CAE Y01 sing 388 n n 
CBI CAU Y01 sing 389 n n 
CAU CAS Y01 sing 390 n n 
CAS CBF Y01 sing 391 n n 
CBF CBD Y01 sing 392 n n 
CBF CBH Y01 sing 393 n n 
CBD CAK Y01 sing 394 n n 
CAK CAI Y01 sing 395 n n 
CAI CAZ Y01 doub 396 n n 
CAZ CAV Y01 sing 397 n n 
CAZ CBH Y01 sing 398 n n 
CAV CBC Y01 sing 399 n n 
CBH CAD Y01 sing 400 n n 
CBH CAT Y01 sing 401 n n 
CAT CAR Y01 sing 402 n n 
CAR CBC Y01 sing 403 n n 
CBC OAW Y01 sing 404 n n 
OAW CAY Y01 sing 405 n n 
CAY OAG Y01 doub 406 n n 
CAY CAM Y01 sing 407 n n 
CAM CAL Y01 sing 408 n n 
CAL CAX Y01 sing 409 n n 
CAX OAH Y01 sing 410 n n 
CAX OAF Y01 doub 411 n n 
CAA HAA1 Y01 sing 412 n n 
CAA HAA2 Y01 sing 413 n n 
CAA HAA3 Y01 sing 414 n n 
CBA HBA Y01 sing 415 n n 
CAB HAB1 Y01 sing 416 n n 
CAB HAB2 Y01 sing 417 n n 
CAB HAB3 Y01 sing 418 n n 
CAN HAN1 Y01 sing 419 n n 
CAN HAN2 Y01 sing 420 n n 
CAJ HAJ1 Y01 sing 421 n n 
CAJ HAJ2 Y01 sing 422 n n 
CAO HAO1 Y01 sing 423 n n 
CAO HAO2 Y01 sing 424 n n 
CBB HBB Y01 sing 425 n n 
CAC HAC1 Y01 sing 426 n n 
CAC HAC2 Y01 sing 427 n n 
CAC HAC3 Y01 sing 428 n n 
CBE HBE Y01 sing 429 n n 
CAP HAP1 Y01 sing 430 n n 
CAP HAP2 Y01 sing 431 n n 
CAQ HAQ1 Y01 sing 432 n n 
CAQ HAQ2 Y01 sing 433 n n 
CBG HBG Y01 sing 434 n n 
CBD HBD Y01 sing 435 n n 
CAE HAE1 Y01 sing 436 n n 
CAE HAE2 Y01 sing 437 n n 
CAE HAE3 Y01 sing 438 n n 
CAU HAU1 Y01 sing 439 n n 
CAU HAU2 Y01 sing 440 n n 
CAS HAS1 Y01 sing 441 n n 
CAS HAS2 Y01 sing 442 n n 
CBF HBF Y01 sing 443 n n 
CAK HAK1 Y01 sing 444 n n 
CAK HAK2 Y01 sing 445 n n 
CAI HAI Y01 sing 446 n n 
CAV HAV1 Y01 sing 447 n n 
CAV HAV2 Y01 sing 448 n n 
CBC HBC Y01 sing 449 n n 
CAD HAD1 Y01 sing 450 n n 
CAD HAD2 Y01 sing 451 n n 
CAD HAD3 Y01 sing 452 n n 
CAT HAT1 Y01 sing 453 n n 
CAT HAT2 Y01 sing 454 n n 
CAR HAR1 Y01 sing 455 n n 
CAR HAR2 Y01 sing 456 n n 
CAM HAM1 Y01 sing 457 n n 
CAM HAM2 Y01 sing 458 n n 
CAL HAL1 Y01 sing 459 n n 
CAL HAL2 Y01 sing 460 n n 
OAH HAH Y01 sing 461 n n 
#
_atom_sites.entry_id                     8J0J 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 CL A 1 901 839 CL CL . 
E 3 Y01 A 1 902 840 Y01 Y01 . 
F 3 Y01 B 1 901 840 Y01 Y01 . 
G 2 CL B 1 902 839 CL CL . 
H 3 Y01 C 1 901 840 Y01 Y01 . 
I 2 CL C 1 902 839 CL CL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . E 3 120.713 130.286 128.183 1 16.35 ? CAA Y01 902 A 1 
HETATM 2 C CBA Y01 . . . E 3 120.353 129.054 129.015 1 19.67 ? CBA Y01 902 A 1 
HETATM 3 C CAB Y01 . . . E 3 118.948 128.591 128.698 1 15.2 ? CAB Y01 902 A 1 
HETATM 4 C CAN Y01 . . . E 3 121.408 127.926 128.886 1 13.91 ? CAN Y01 902 A 1 
HETATM 5 C CAJ Y01 . . . E 3 121.406 127.097 127.588 1 19.37 ? CAJ Y01 902 A 1 
HETATM 6 C CAO Y01 . . . E 3 122.446 127.409 126.491 1 14.88 ? CAO Y01 902 A 1 
HETATM 7 C CBB Y01 . . . E 3 123.863 127.694 126.979 1 20.19 ? CBB Y01 902 A 1 
HETATM 8 C CAC Y01 . . . E 3 124.239 126.659 128.027 1 14.93 ? CAC Y01 902 A 1 
HETATM 9 C CBE Y01 . . . E 3 124.981 127.919 125.9 1 18.91 ? CBE Y01 902 A 1 
HETATM 10 C CAP Y01 . . . E 3 126.426 128.083 126.413 1 17.65 ? CAP Y01 902 A 1 
HETATM 11 C CAQ Y01 . . . E 3 127.334 127.254 125.557 1 17.12 ? CAQ Y01 902 A 1 
HETATM 12 C CBG Y01 . . . E 3 126.522 127.078 124.311 1 13.96 ? CBG Y01 902 A 1 
HETATM 13 C CBI Y01 . . . E 3 125.125 126.838 124.832 1 14.57 ? CBI Y01 902 A 1 
HETATM 14 C CAE Y01 . . . E 3 124.968 125.419 125.378 1 19.33 ? CAE Y01 902 A 1 
HETATM 15 C CAU Y01 . . . E 3 124.279 127.047 123.603 1 18.5 ? CAU Y01 902 A 1 
HETATM 16 C CAS Y01 . . . E 3 124.699 126.151 122.466 1 18.63 ? CAS Y01 902 A 1 
HETATM 17 C CBF Y01 . . . E 3 126.103 126.291 122.099 1 13.15 ? CBF Y01 902 A 1 
HETATM 18 C CBD Y01 . . . E 3 126.87 126.028 123.245 1 14.34 ? CBD Y01 902 A 1 
HETATM 19 C CAK Y01 . . . E 3 128.298 126.085 123.039 1 17.54 ? CAK Y01 902 A 1 
HETATM 20 C CAI Y01 . . . E 3 128.929 126.013 121.699 1 16.45 ? CAI Y01 902 A 1 
HETATM 21 C CAZ Y01 . . . E 3 128.042 125.816 120.668 1 11.22 ? CAZ Y01 902 A 1 
HETATM 22 C CAV Y01 . . . E 3 128.716 125.722 119.39 1 13.94 ? CAV Y01 902 A 1 
HETATM 23 C CBH Y01 . . . E 3 126.583 125.661 120.859 1 14.5 ? CBH Y01 902 A 1 
HETATM 24 C CAD Y01 . . . E 3 126.515 124.155 120.951 1 18.2 ? CAD Y01 902 A 1 
HETATM 25 C CAT Y01 . . . E 3 125.922 126.119 119.573 1 19.19 ? CAT Y01 902 A 1 
HETATM 26 C CAR Y01 . . . E 3 126.768 125.95 118.339 1 15.23 ? CAR Y01 902 A 1 
HETATM 27 C CBC Y01 . . . E 3 128.021 126.691 118.593 1 16.17 ? CBC Y01 902 A 1 
HETATM 28 O OAW Y01 . . . E 3 128.84 127.146 117.556 1 22.89 ? OAW Y01 902 A 1 
HETATM 29 C CAY Y01 . . . E 3 129.343 126.239 116.677 1 20.3 ? CAY Y01 902 A 1 
HETATM 30 O OAG Y01 . . . E 3 130.509 125.966 116.847 1 20.52 ? OAG Y01 902 A 1 
HETATM 31 C CAM Y01 . . . E 3 128.423 125.704 115.621 1 16.39 ? CAM Y01 902 A 1 
HETATM 32 C CAL Y01 . . . E 3 128.251 124.204 115.73 1 17.2 ? CAL Y01 902 A 1 
HETATM 33 C CAX Y01 . . . E 3 127.302 123.61 114.684 1 17.72 ? CAX Y01 902 A 1 
HETATM 34 O OAH Y01 . . . E 3 126.083 123.811 114.838 1 19.31 ? OAH Y01 902 A 1 
HETATM 35 O OAF Y01 . . . E 3 127.853 122.987 113.761 1 14.89 ? OAF Y01 902 A 1 
HETATM 36 H HAA1 Y01 . . . E 3 121.585 130.122 127.536 1 15.27 ? HAA1 Y01 902 A 1 
HETATM 37 H HAA2 Y01 . . . E 3 119.922 130.635 127.517 1 15.45 ? HAA2 Y01 902 A 1 
HETATM 38 H HAA3 Y01 . . . E 3 120.991 131.165 128.776 1 15.12 ? HAA3 Y01 902 A 1 
HETATM 39 H HBA Y01 . . . E 3 120.353 129.398 130.074 1 16.1 ? HBA Y01 902 A 1 
HETATM 40 H HAB1 Y01 . . . E 3 118.63 128.861 127.688 1 15.93 ? HAB1 Y01 902 A 1 
HETATM 41 H HAB2 Y01 . . . E 3 118.834 127.506 128.785 1 14.78 ? HAB2 Y01 902 A 1 
HETATM 42 H HAB3 Y01 . . . E 3 118.178 129.023 129.354 1 15.09 ? HAB3 Y01 902 A 1 
HETATM 43 H HAN1 Y01 . . . E 3 121.289 127.245 129.743 1 14.85 ? HAN1 Y01 902 A 1 
HETATM 44 H HAN2 Y01 . . . E 3 122.393 128.381 129.046 1 14.54 ? HAN2 Y01 902 A 1 
HETATM 45 H HAJ1 Y01 . . . E 3 121.497 126.055 127.875 1 15.62 ? HAJ1 Y01 902 A 1 
HETATM 46 H HAJ2 Y01 . . . E 3 120.4 127.108 127.138 1 15.93 ? HAJ2 Y01 902 A 1 
HETATM 47 H HAO1 Y01 . . . E 3 122.106 128.291 125.916 1 14.92 ? HAO1 Y01 902 A 1 
HETATM 48 H HAO2 Y01 . . . E 3 122.441 126.617 125.74 1 14.65 ? HAO2 Y01 902 A 1 
HETATM 49 H HBB Y01 . . . E 3 123.817 128.677 127.499 1 15.74 ? HBB Y01 902 A 1 
HETATM 50 H HAC1 Y01 . . . E 3 125.249 126.298 127.874 1 13.93 ? HAC1 Y01 902 A 1 
HETATM 51 H HAC2 Y01 . . . E 3 124.17 127.047 129.042 1 14.37 ? HAC2 Y01 902 A 1 
HETATM 52 H HAC3 Y01 . . . E 3 123.656 125.737 128.046 1 14.8 ? HAC3 Y01 902 A 1 
HETATM 53 H HBE Y01 . . . E 3 124.727 128.875 125.391 1 15.2 ? HBE Y01 902 A 1 
HETATM 54 H HAP1 Y01 . . . E 3 126.56 127.837 127.469 1 15.05 ? HAP1 Y01 902 A 1 
HETATM 55 H HAP2 Y01 . . . E 3 126.749 129.128 126.407 1 15.43 ? HAP2 Y01 902 A 1 
HETATM 56 H HAQ1 Y01 . . . E 3 128.304 127.749 125.4 1 15.43 ? HAQ1 Y01 902 A 1 
HETATM 57 H HAQ2 Y01 . . . E 3 127.651 126.298 126.021 1 14.52 ? HAQ2 Y01 902 A 1 
HETATM 58 H HBG Y01 . . . E 3 126.595 128.065 123.804 1 14.9 ? HBG Y01 902 A 1 
HETATM 59 H HBD Y01 . . . E 3 126.657 124.998 123.603 1 14.38 ? HBD Y01 902 A 1 
HETATM 60 H HAE1 Y01 . . . E 3 125.003 124.598 124.676 1 15.16 ? HAE1 Y01 902 A 1 
HETATM 61 H HAE2 Y01 . . . E 3 125.732 125.12 126.104 1 14.41 ? HAE2 Y01 902 A 1 
HETATM 62 H HAE3 Y01 . . . E 3 124.017 125.273 125.882 1 15.22 ? HAE3 Y01 902 A 1 
HETATM 63 H HAU1 Y01 . . . E 3 124.335 128.103 123.266 1 15.67 ? HAU1 Y01 902 A 1 
HETATM 64 H HAU2 Y01 . . . E 3 123.212 126.955 123.837 1 15.16 ? HAU2 Y01 902 A 1 
HETATM 65 H HAS1 Y01 . . . E 3 124.042 126.355 121.608 1 15.47 ? HAS1 Y01 902 A 1 
HETATM 66 H HAS2 Y01 . . . E 3 124.452 125.105 122.704 1 15.62 ? HAS2 Y01 902 A 1 
HETATM 67 H HBF Y01 . . . E 3 126.167 127.322 121.818 1 15.25 ? HBF Y01 902 A 1 
HETATM 68 H HAK1 Y01 . . . E 3 128.835 125.318 123.574 1 15.23 ? HAK1 Y01 902 A 1 
HETATM 69 H HAK2 Y01 . . . E 3 128.657 127.051 123.451 1 15.46 ? HAK2 Y01 902 A 1 
HETATM 70 H HAI Y01 . . . E 3 129.986 126.114 121.65 1 15.67 ? HAI Y01 902 A 1 
HETATM 71 H HAV1 Y01 . . . E 3 129.798 125.795 119.494 1 14.28 ? HAV1 Y01 902 A 1 
HETATM 72 H HAV2 Y01 . . . E 3 128.722 124.66 119.043 1 14.5 ? HAV2 Y01 902 A 1 
HETATM 73 H HBC Y01 . . . E 3 127.878 127.548 119.261 1 15.19 ? HBC Y01 902 A 1 
HETATM 74 H HAD1 Y01 . . . E 3 126.143 123.804 121.917 1 14.47 ? HAD1 Y01 902 A 1 
HETATM 75 H HAD2 Y01 . . . E 3 125.852 123.722 120.216 1 14.69 ? HAD2 Y01 902 A 1 
HETATM 76 H HAD3 Y01 . . . E 3 127.487 123.664 120.848 1 14.11 ? HAD3 Y01 902 A 1 
HETATM 77 H HAT1 Y01 . . . E 3 124.963 125.607 119.404 1 15.91 ? HAT1 Y01 902 A 1 
HETATM 78 H HAT2 Y01 . . . E 3 125.649 127.186 119.686 1 15.9 ? HAT2 Y01 902 A 1 
HETATM 79 H HAR1 Y01 . . . E 3 126.929 124.884 118.166 1 14.69 ? HAR1 Y01 902 A 1 
HETATM 80 H HAR2 Y01 . . . E 3 126.286 126.315 117.433 1 15.16 ? HAR2 Y01 902 A 1 
HETATM 81 H HAM1 Y01 . . . E 3 128.847 125.951 114.63 1 15.18 ? HAM1 Y01 902 A 1 
HETATM 82 H HAM2 Y01 . . . E 3 127.444 126.206 115.616 1 14.43 ? HAM2 Y01 902 A 1 
HETATM 83 H HAL1 Y01 . . . E 3 129.206 123.697 115.622 1 14.06 ? HAL1 Y01 902 A 1 
HETATM 84 H HAL2 Y01 . . . E 3 127.926 123.902 116.727 1 14.6 ? HAL2 Y01 902 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           84 
#