data_8J0X # _model_server_result.job_id ob1g9dYEIGIjBLGcjfHU5Q _model_server_result.datetime_utc '2025-09-14 12:55:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j0x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8J0X # _exptl.entry_id 8J0X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J0X _cell.length_a 182.34 _cell.length_b 182.34 _cell.length_c 182.34 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J0X _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0 0 -182.34 4 'crystal symmetry operation' 4_554 x,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -182.34 5 'crystal symmetry operation' 13_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -182.34 6 'crystal symmetry operation' 14_554 -y,-x,-z-1 0 -1 0 -1 0 0 0 0 -1 0 0 -182.34 7 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 8 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 9 'crystal symmetry operation' 33_554 y,z+1/2,x-1/2 0 1 0 0 0 1 1 0 0 0 91.17 -91.17 10 'crystal symmetry operation' 34_554 -y,z+1/2,-x-1/2 0 -1 0 0 0 1 -1 0 0 0 91.17 -91.17 11 'crystal symmetry operation' 35_544 y,-z-1/2,-x-1/2 0 1 0 0 0 -1 -1 0 0 0 -91.17 -91.17 12 'crystal symmetry operation' 36_544 -y,-z-1/2,x-1/2 0 -1 0 0 0 -1 1 0 0 0 -91.17 -91.17 13 'crystal symmetry operation' 41_554 x,z+1/2,-y-1/2 1 0 0 0 0 1 0 -1 0 0 91.17 -91.17 14 'crystal symmetry operation' 42_554 -x,z+1/2,y-1/2 -1 0 0 0 0 1 0 1 0 0 91.17 -91.17 15 'crystal symmetry operation' 43_544 -x,-z-1/2,-y-1/2 -1 0 0 0 0 -1 0 -1 0 0 -91.17 -91.17 16 'crystal symmetry operation' 44_544 x,-z-1/2,y-1/2 1 0 0 0 0 -1 0 1 0 0 -91.17 -91.17 17 'crystal symmetry operation' 53_554 z+1/2,x,y-1/2 0 0 1 1 0 0 0 1 0 91.17 0 -91.17 18 'crystal symmetry operation' 54_554 z+1/2,-x,-y-1/2 0 0 1 -1 0 0 0 -1 0 91.17 0 -91.17 19 'crystal symmetry operation' 55_454 -z-1/2,-x,y-1/2 0 0 -1 -1 0 0 0 1 0 -91.17 0 -91.17 20 'crystal symmetry operation' 56_454 -z-1/2,x,-y-1/2 0 0 -1 1 0 0 0 -1 0 -91.17 0 -91.17 21 'crystal symmetry operation' 69_554 z+1/2,y,-x-1/2 0 0 1 0 1 0 -1 0 0 91.17 0 -91.17 22 'crystal symmetry operation' 70_554 z+1/2,-y,x-1/2 0 0 1 0 -1 0 1 0 0 91.17 0 -91.17 23 'crystal symmetry operation' 71_454 -z-1/2,y,x-1/2 0 0 -1 0 1 0 1 0 0 -91.17 0 -91.17 24 'crystal symmetry operation' 72_454 -z-1/2,-y,-x-1/2 0 0 -1 0 -1 0 -1 0 0 -91.17 0 -91.17 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 80 X ASP 80 1_555 B CD CD . X CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A OD2 ASP 80 X ASP 80 1_555 B CD CD . X CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc3 A OD1 ASP 80 X ASP 80 1_555 B CD CD . X CD 201 22_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc4 A OD2 ASP 80 X ASP 80 1_555 B CD CD . X CD 201 22_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc5 A OD1 ASP 80 X ASP 80 1_555 E CD CD . X CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc6 A OD2 ASP 80 X ASP 80 1_555 E CD CD . X CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc7 A OD1 ASP 80 X ASP 80 1_555 E CD CD . X CD 204 22_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc8 A OD2 ASP 80 X ASP 80 1_555 E CD CD . X CD 204 22_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc9 A OE1 GLU 130 X GLU 130 1_555 C CD CD . X CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc10 A OE1 GLU 130 X GLU 130 1_555 C CD CD . X CD 202 35_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc11 C CD CD . X CD 202 1_555 J O HOH . X HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc12 C CD CD . X CD 202 1_555 J O HOH . X HOH 352 35_544 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc13 D CD CD . X CD 203 1_555 J O HOH . X HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc14 D CD CD . X CD 203 1_555 J O HOH . X HOH 343 56_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8J0X _atom_sites.fract_transf_matrix[1][1] 0.005484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD X 1 201 1 CD CD . C 2 CD X 1 202 2 CD CD . D 2 CD X 1 203 3 CD CD . E 2 CD X 1 204 4 CD CD . F 3 CL X 1 205 1 CL CL . G 4 SO4 X 1 206 1 SO4 SO4 . H 4 SO4 X 1 207 2 SO4 SO4 . I 5 EDO X 1 208 201 EDO EDO . J 6 HOH X 1 301 117 HOH HOH . J 6 HOH X 2 302 154 HOH HOH . J 6 HOH X 3 303 60 HOH HOH . J 6 HOH X 4 304 101 HOH HOH . J 6 HOH X 5 305 152 HOH HOH . J 6 HOH X 6 306 150 HOH HOH . J 6 HOH X 7 307 133 HOH HOH . J 6 HOH X 8 308 87 HOH HOH . J 6 HOH X 9 309 108 HOH HOH . J 6 HOH X 10 310 49 HOH HOH . J 6 HOH X 11 311 81 HOH HOH . J 6 HOH X 12 312 126 HOH HOH . J 6 HOH X 13 313 112 HOH HOH . J 6 HOH X 14 314 25 HOH HOH . J 6 HOH X 15 315 78 HOH HOH . J 6 HOH X 16 316 103 HOH HOH . J 6 HOH X 17 317 55 HOH HOH . J 6 HOH X 18 318 141 HOH HOH . J 6 HOH X 19 319 92 HOH HOH . J 6 HOH X 20 320 35 HOH HOH . J 6 HOH X 21 321 4 HOH HOH . J 6 HOH X 22 322 104 HOH HOH . J 6 HOH X 23 323 12 HOH HOH . J 6 HOH X 24 324 5 HOH HOH . J 6 HOH X 25 325 53 HOH HOH . J 6 HOH X 26 326 93 HOH HOH . J 6 HOH X 27 327 67 HOH HOH . J 6 HOH X 28 328 66 HOH HOH . J 6 HOH X 29 329 14 HOH HOH . J 6 HOH X 30 330 95 HOH HOH . J 6 HOH X 31 331 34 HOH HOH . J 6 HOH X 32 332 54 HOH HOH . J 6 HOH X 33 333 15 HOH HOH . J 6 HOH X 34 334 132 HOH HOH . J 6 HOH X 35 335 45 HOH HOH . J 6 HOH X 36 336 2 HOH HOH . J 6 HOH X 37 337 21 HOH HOH . J 6 HOH X 38 338 26 HOH HOH . J 6 HOH X 39 339 114 HOH HOH . J 6 HOH X 40 340 13 HOH HOH . J 6 HOH X 41 341 6 HOH HOH . J 6 HOH X 42 342 94 HOH HOH . J 6 HOH X 43 343 98 HOH HOH . J 6 HOH X 44 344 1 HOH HOH . J 6 HOH X 45 345 56 HOH HOH . J 6 HOH X 46 346 5 HOH HOH . J 6 HOH X 47 347 6 HOH HOH . J 6 HOH X 48 348 48 HOH HOH . J 6 HOH X 49 349 68 HOH HOH . J 6 HOH X 50 350 39 HOH HOH . J 6 HOH X 51 351 3 HOH HOH . J 6 HOH X 52 352 149 HOH HOH . J 6 HOH X 53 353 79 HOH HOH . J 6 HOH X 54 354 11 HOH HOH . J 6 HOH X 55 355 30 HOH HOH . J 6 HOH X 56 356 61 HOH HOH . J 6 HOH X 57 357 9 HOH HOH . J 6 HOH X 58 358 72 HOH HOH . J 6 HOH X 59 359 3 HOH HOH . J 6 HOH X 60 360 137 HOH HOH . J 6 HOH X 61 361 18 HOH HOH . J 6 HOH X 62 362 50 HOH HOH . J 6 HOH X 63 363 75 HOH HOH . J 6 HOH X 64 364 29 HOH HOH . J 6 HOH X 65 365 97 HOH HOH . J 6 HOH X 66 366 120 HOH HOH . J 6 HOH X 67 367 33 HOH HOH . J 6 HOH X 68 368 106 HOH HOH . J 6 HOH X 69 369 44 HOH HOH . J 6 HOH X 70 370 85 HOH HOH . J 6 HOH X 71 371 40 HOH HOH . J 6 HOH X 72 372 138 HOH HOH . J 6 HOH X 73 373 17 HOH HOH . J 6 HOH X 74 374 105 HOH HOH . J 6 HOH X 75 375 41 HOH HOH . J 6 HOH X 76 376 32 HOH HOH . J 6 HOH X 77 377 62 HOH HOH . J 6 HOH X 78 378 69 HOH HOH . J 6 HOH X 79 379 22 HOH HOH . J 6 HOH X 80 380 36 HOH HOH . J 6 HOH X 81 381 42 HOH HOH . J 6 HOH X 82 382 65 HOH HOH . J 6 HOH X 83 383 115 HOH HOH . J 6 HOH X 84 384 84 HOH HOH . J 6 HOH X 85 385 19 HOH HOH . J 6 HOH X 86 386 20 HOH HOH . J 6 HOH X 87 387 90 HOH HOH . J 6 HOH X 88 388 23 HOH HOH . J 6 HOH X 89 389 8 HOH HOH . J 6 HOH X 90 390 38 HOH HOH . J 6 HOH X 91 391 124 HOH HOH . J 6 HOH X 92 392 24 HOH HOH . J 6 HOH X 93 393 91 HOH HOH . J 6 HOH X 94 394 51 HOH HOH . J 6 HOH X 95 395 7 HOH HOH . J 6 HOH X 96 396 57 HOH HOH . J 6 HOH X 97 397 122 HOH HOH . J 6 HOH X 98 398 113 HOH HOH . J 6 HOH X 99 399 70 HOH HOH . J 6 HOH X 100 400 140 HOH HOH . J 6 HOH X 101 401 142 HOH HOH . J 6 HOH X 102 402 125 HOH HOH . J 6 HOH X 103 403 100 HOH HOH . J 6 HOH X 104 404 129 HOH HOH . J 6 HOH X 105 405 134 HOH HOH . J 6 HOH X 106 406 43 HOH HOH . J 6 HOH X 107 407 128 HOH HOH . J 6 HOH X 108 408 131 HOH HOH . J 6 HOH X 109 409 31 HOH HOH . J 6 HOH X 110 410 136 HOH HOH . J 6 HOH X 111 411 80 HOH HOH . J 6 HOH X 112 412 121 HOH HOH . J 6 HOH X 113 413 47 HOH HOH . J 6 HOH X 114 414 27 HOH HOH . J 6 HOH X 115 415 83 HOH HOH . J 6 HOH X 116 416 37 HOH HOH . J 6 HOH X 117 417 88 HOH HOH . J 6 HOH X 118 418 96 HOH HOH . J 6 HOH X 119 419 16 HOH HOH . J 6 HOH X 120 420 143 HOH HOH . J 6 HOH X 121 421 73 HOH HOH . J 6 HOH X 122 422 119 HOH HOH . J 6 HOH X 123 423 135 HOH HOH . J 6 HOH X 124 424 77 HOH HOH . J 6 HOH X 125 425 58 HOH HOH . J 6 HOH X 126 426 86 HOH HOH . J 6 HOH X 127 427 59 HOH HOH . J 6 HOH X 128 428 76 HOH HOH . J 6 HOH X 129 429 71 HOH HOH . J 6 HOH X 130 430 127 HOH HOH . J 6 HOH X 131 431 123 HOH HOH . J 6 HOH X 132 432 52 HOH HOH . J 6 HOH X 133 433 99 HOH HOH . J 6 HOH X 134 434 74 HOH HOH . J 6 HOH X 135 435 107 HOH HOH . J 6 HOH X 136 436 64 HOH HOH . J 6 HOH X 137 437 146 HOH HOH . J 6 HOH X 138 438 10 HOH HOH . J 6 HOH X 139 439 89 HOH HOH . J 6 HOH X 140 440 4 HOH HOH . J 6 HOH X 141 441 116 HOH HOH . J 6 HOH X 142 442 118 HOH HOH . J 6 HOH X 143 443 153 HOH HOH . J 6 HOH X 144 444 63 HOH HOH . J 6 HOH X 145 445 145 HOH HOH . J 6 HOH X 146 446 28 HOH HOH . J 6 HOH X 147 447 144 HOH HOH . J 6 HOH X 148 448 139 HOH HOH . J 6 HOH X 149 449 82 HOH HOH . J 6 HOH X 150 450 148 HOH HOH . J 6 HOH X 151 451 130 HOH HOH . J 6 HOH X 152 452 2 HOH HOH . J 6 HOH X 153 453 111 HOH HOH . J 6 HOH X 154 454 151 HOH HOH . J 6 HOH X 155 455 147 HOH HOH . J 6 HOH X 156 456 46 HOH HOH . J 6 HOH X 157 457 102 HOH HOH . J 6 HOH X 158 458 109 HOH HOH . J 6 HOH X 159 459 110 HOH HOH . J 6 HOH X 160 460 7 HOH HOH . J 6 HOH X 161 461 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -29.733 _atom_site.Cartn_y -29.733 _atom_site.Cartn_z -61.437 _atom_site.occupancy 0.18 _atom_site.B_iso_or_equiv 36.58 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 202 _atom_site.auth_asym_id X _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #