data_8J19
#
_model_server_result.job_id            MCkG0QXGqke2xn1NMr3pFw 
_model_server_result.datetime_utc      '2024-10-11 00:28:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8j19 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    8J19 
#
_exptl.entry_id    8J19 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              237.338 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-nonylpyridine-2,4-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8J19 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8J19 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 21 R CYS 11 1_555 A SG CYS 176 R CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
disulf ? disulf2 D SG CYS 22 S CYS 22 1_555 D SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C14 H23 N O2' 
_chem_comp.formula_weight    237.338 
_chem_comp.id                SWO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-nonylpyridine-2,4-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 C13 SWO sing 288 n n 
C12 C11 SWO sing 289 n n 
C14 C15 SWO sing 290 n n 
C14 C13 SWO sing 291 n n 
C10 C11 SWO sing 292 n n 
C10 C09 SWO sing 293 n n 
C09 C08 SWO sing 294 n n 
C08 C07 SWO sing 295 n n 
C07 C03 SWO sing 296 n n 
N04 C03 SWO doub 297 n y 
N04 C05 SWO sing 298 n y 
C03 C02 SWO sing 299 n y 
O17 C05 SWO sing 300 n n 
C05 C06 SWO doub 301 n y 
C02 C01 SWO doub 302 n y 
C06 C01 SWO sing 303 n y 
C01 O16 SWO sing 304 n n 
C10 H1 SWO sing 305 n n 
C10 H2 SWO sing 306 n n 
C13 H3 SWO sing 307 n n 
C13 H4 SWO sing 308 n n 
C15 H5 SWO sing 309 n n 
C15 H6 SWO sing 310 n n 
C15 H7 SWO sing 311 n n 
C02 H8 SWO sing 312 n n 
C06 H9 SWO sing 313 n n 
C07 H11 SWO sing 314 n n 
C07 H12 SWO sing 315 n n 
C08 H13 SWO sing 316 n n 
C08 H14 SWO sing 317 n n 
C09 H15 SWO sing 318 n n 
C09 H16 SWO sing 319 n n 
C11 H17 SWO sing 320 n n 
C11 H18 SWO sing 321 n n 
C12 H19 SWO sing 322 n n 
C12 H20 SWO sing 323 n n 
C14 H21 SWO sing 324 n n 
C14 H22 SWO sing 325 n n 
O16 H23 SWO sing 326 n n 
O17 H24 SWO sing 327 n n 
#
_atom_sites.entry_id                     8J19 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           SWO 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     401 
_pdbx_nonpoly_scheme.pdb_mon_id       SWO 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 SWO . . . F 6 104.861 107.021 134.482 1 20 ? C10 SWO 401 R 1 
HETATM 2 C C13 SWO . . . F 6 101.719 108.297 134.484 1 20 ? C13 SWO 401 R 1 
HETATM 3 C C15 SWO . . . F 6 99.765 109.802 134.482 1 20 ? C15 SWO 401 R 1 
HETATM 4 C C01 SWO . . . F 6 108.692 107.737 139.869 1 20 ? C01 SWO 401 R 1 
HETATM 5 C C02 SWO . . . F 6 107.954 107.912 138.775 1 20 ? C02 SWO 401 R 1 
HETATM 6 C C03 SWO . . . F 6 108.287 107.281 137.657 1 20 ? C03 SWO 401 R 1 
HETATM 7 N N04 SWO . . . F 6 109.35 106.649 137.564 1 20 ? N04 SWO 401 R 1 
HETATM 8 C C05 SWO . . . F 6 110.103 106.407 138.569 1 20 ? C05 SWO 401 R 1 
HETATM 9 C C06 SWO . . . F 6 109.811 106.966 139.776 1 20 ? C06 SWO 401 R 1 
HETATM 10 C C07 SWO . . . F 6 107.393 107.545 136.506 1 20 ? C07 SWO 401 R 1 
HETATM 11 C C08 SWO . . . F 6 107.094 106.523 135.48 1 20 ? C08 SWO 401 R 1 
HETATM 12 C C09 SWO . . . F 6 105.642 106.188 135.446 1 20 ? C09 SWO 401 R 1 
HETATM 13 C C11 SWO . . . F 6 103.402 106.69 134.566 1 20 ? C11 SWO 401 R 1 
HETATM 14 C C12 SWO . . . F 6 102.545 107.445 133.623 1 20 ? C12 SWO 401 R 1 
HETATM 15 C C14 SWO . . . F 6 100.686 108.932 133.641 1 20 ? C14 SWO 401 R 1 
HETATM 16 O O16 SWO . . . F 6 108.369 108.329 141.083 1 20 ? O16 SWO 401 R 1 
HETATM 17 O O17 SWO . . . F 6 111.208 105.591 138.423 1 20 ? O17 SWO 401 R 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           17 
#