data_8J1M
#
_model_server_result.job_id            HbQ2f8aNjWA9_cNoSAJCXQ 
_model_server_result.datetime_utc      '2024-11-15 02:08:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8j1m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":410}' 
#
_entry.id    8J1M 
#
_exptl.entry_id    8J1M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.92 
_cell.angle_gamma         90 
_cell.entry_id            8J1M 
_cell.length_a            116.407 
_cell.length_b            51.012 
_cell.length_c            51.817 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8J1M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O MET 71 A MET 91 1_555 L HG HG . A HG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.064 ? 
metalc ? metalc2 A SG CYS 75 A CYS 95 1_555 L HG HG . A HG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc3 A OD1 ASP 124 A ASP 144 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc4 A NE2 HIS 129 A HIS 149 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc5 A NE2 HIS 131 A HIS 151 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc6 A NE2 HIS 157 A HIS 177 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc7 A OD1 ASN 158 A ASN 178 1_555 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc8 A OE1 GLU 161 A GLU 181 1_555 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc9 A OE2 GLU 161 A GLU 181 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc10 A OE1 GLN 187 A GLN 207 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc11 A OD1 ASP 188 A ASP 208 1_555 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc12 A OE1 GLU 191 A GLU 211 1_555 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc13 A OE1 GLU 191 A GLU 211 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc14 A OE2 GLU 191 A GLU 211 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc15 A SG CYS 194 A CYS 214 1_555 L HG HG . A HG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc16 A OE2 GLU 220 A GLU 240 1_555 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc17 A OE1 GLU 256 A GLU 276 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc18 A OE2 GLU 256 A GLU 276 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc19 B CD CD . A CD 401 1_555 M O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc20 D CD CD . A CD 403 1_555 M O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc21 L HG HG . A HG 411 1_555 M O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                MPG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 MPG sing 213 n n 
C2 C1 MPG sing 214 n n 
C3 C4 MPG sing 215 n n 
C4 C5 MPG sing 216 n n 
C5 C6 MPG sing 217 n n 
C6 C7 MPG sing 218 n n 
C7 C8 MPG sing 219 n n 
C8 C9 MPG sing 220 n n 
C9 C10 MPG doub 221 z n 
C10 C11 MPG sing 222 n n 
C11 C12 MPG sing 223 n n 
C12 C13 MPG sing 224 n n 
C13 C14 MPG sing 225 n n 
C14 C15 MPG sing 226 n n 
C15 C16 MPG sing 227 n n 
C16 C17 MPG sing 228 n n 
C17 C18 MPG sing 229 n n 
O1 C1 MPG sing 230 n n 
O1 CX3 MPG sing 231 n n 
CXD O2 MPG sing 232 n n 
CXD C21 MPG sing 233 n n 
CXD CX3 MPG sing 234 n n 
C21 O3 MPG sing 235 n n 
C2 H21C MPG sing 236 n n 
C2 H22C MPG sing 237 n n 
C3 H31C MPG sing 238 n n 
C3 H32C MPG sing 239 n n 
CX3 O4 MPG doub 240 n n 
C4 H41C MPG sing 241 n n 
C4 H42C MPG sing 242 n n 
C5 H51C MPG sing 243 n n 
C5 H52C MPG sing 244 n n 
C6 H61C MPG sing 245 n n 
C6 H62C MPG sing 246 n n 
C7 H71C MPG sing 247 n n 
C7 H72C MPG sing 248 n n 
C8 H81C MPG sing 249 n n 
C8 H82C MPG sing 250 n n 
C9 H9 MPG sing 251 n n 
C10 H10 MPG sing 252 n n 
C11 H111 MPG sing 253 n n 
C11 H112 MPG sing 254 n n 
C12 H121 MPG sing 255 n n 
C12 H122 MPG sing 256 n n 
C13 H131 MPG sing 257 n n 
C13 H132 MPG sing 258 n n 
C14 H141 MPG sing 259 n n 
C14 H142 MPG sing 260 n n 
C15 H151 MPG sing 261 n n 
C15 H152 MPG sing 262 n n 
C16 H161 MPG sing 263 n n 
C16 H162 MPG sing 264 n n 
C17 H171 MPG sing 265 n n 
C17 H172 MPG sing 266 n n 
C18 H181 MPG sing 267 n n 
C18 H182 MPG sing 268 n n 
C18 H183 MPG sing 269 n n 
C1 HX31 MPG sing 270 n n 
C1 HX32 MPG sing 271 n n 
CXD HXD MPG sing 272 n n 
O2 H2 MPG sing 273 n n 
C21 H211 MPG sing 274 n n 
C21 H212 MPG sing 275 n n 
O3 H3 MPG sing 276 n n 
#
_atom_sites.entry_id                     8J1M 
_atom_sites.fract_transf_matrix[1][1]    0.008591 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00381 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019603 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021112 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 401 1 CD CD . 
C 2 CD A 1 402 3 CD CD . 
D 2 CD A 1 403 4 CD CD . 
E 3 CL A 1 404 2 CL CL . 
F 3 CL A 1 405 5 CL CL . 
G 4 MPG A 1 406 1 MPG MPG . 
H 4 MPG A 1 407 2 MPG MPG . 
I 4 MPG A 1 408 3 MPG MPG . 
J 4 MPG A 1 409 4 MPG MPG . 
K 4 MPG A 1 410 5 MPG MPG . 
L 5 HG A 1 411 1 HG HG . 
M 6 HOH A 1 501 17 HOH HOH . 
M 6 HOH A 2 502 42 HOH HOH . 
M 6 HOH A 3 503 45 HOH HOH . 
M 6 HOH A 4 504 19 HOH HOH . 
M 6 HOH A 5 505 10 HOH HOH . 
M 6 HOH A 6 506 56 HOH HOH . 
M 6 HOH A 7 507 44 HOH HOH . 
M 6 HOH A 8 508 11 HOH HOH . 
M 6 HOH A 9 509 30 HOH HOH . 
M 6 HOH A 10 510 51 HOH HOH . 
M 6 HOH A 11 511 25 HOH HOH . 
M 6 HOH A 12 512 34 HOH HOH . 
M 6 HOH A 13 513 24 HOH HOH . 
M 6 HOH A 14 514 59 HOH HOH . 
M 6 HOH A 15 515 37 HOH HOH . 
M 6 HOH A 16 516 9 HOH HOH . 
M 6 HOH A 17 517 36 HOH HOH . 
M 6 HOH A 18 518 8 HOH HOH . 
M 6 HOH A 19 519 4 HOH HOH . 
M 6 HOH A 20 520 35 HOH HOH . 
M 6 HOH A 21 521 50 HOH HOH . 
M 6 HOH A 22 522 27 HOH HOH . 
M 6 HOH A 23 523 1 HOH HOH . 
M 6 HOH A 24 524 23 HOH HOH . 
M 6 HOH A 25 525 21 HOH HOH . 
M 6 HOH A 26 526 46 HOH HOH . 
M 6 HOH A 27 527 2 HOH HOH . 
M 6 HOH A 28 528 31 HOH HOH . 
M 6 HOH A 29 529 32 HOH HOH . 
M 6 HOH A 30 530 40 HOH HOH . 
M 6 HOH A 31 531 52 HOH HOH . 
M 6 HOH A 32 532 38 HOH HOH . 
M 6 HOH A 33 533 41 HOH HOH . 
M 6 HOH A 34 534 15 HOH HOH . 
M 6 HOH A 35 535 39 HOH HOH . 
M 6 HOH A 36 536 47 HOH HOH . 
M 6 HOH A 37 537 3 HOH HOH . 
M 6 HOH A 38 538 26 HOH HOH . 
M 6 HOH A 39 539 43 HOH HOH . 
M 6 HOH A 40 540 14 HOH HOH . 
M 6 HOH A 41 541 53 HOH HOH . 
M 6 HOH A 42 542 60 HOH HOH . 
M 6 HOH A 43 543 6 HOH HOH . 
M 6 HOH A 44 544 16 HOH HOH . 
M 6 HOH A 45 545 54 HOH HOH . 
M 6 HOH A 46 546 49 HOH HOH . 
M 6 HOH A 47 547 58 HOH HOH . 
M 6 HOH A 48 548 29 HOH HOH . 
M 6 HOH A 49 549 22 HOH HOH . 
M 6 HOH A 50 550 7 HOH HOH . 
M 6 HOH A 51 551 55 HOH HOH . 
M 6 HOH A 52 552 48 HOH HOH . 
M 6 HOH A 53 553 5 HOH HOH . 
M 6 HOH A 54 554 20 HOH HOH . 
M 6 HOH A 55 555 12 HOH HOH . 
M 6 HOH A 56 556 13 HOH HOH . 
M 6 HOH A 57 557 28 HOH HOH . 
M 6 HOH A 58 558 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 MPG . . . K 4 -15.861 -4.121 11.188 1 77.16 ? C2 MPG 410 A 1 
HETATM 2 C C3 MPG . . . K 4 -15.469 -5.04 10.032 1 72.4 ? C3 MPG 410 A 1 
HETATM 3 C C4 MPG . . . K 4 -16.531 -6.11 9.792 1 64.08 ? C4 MPG 410 A 1 
HETATM 4 C C5 MPG . . . K 4 -15.887 -7.303 9.091 1 62.77 ? C5 MPG 410 A 1 
HETATM 5 C C6 MPG . . . K 4 -16.534 -7.539 7.726 1 54.83 ? C6 MPG 410 A 1 
HETATM 6 C C7 MPG . . . K 4 -15.782 -6.752 6.655 1 56.02 ? C7 MPG 410 A 1 
HETATM 7 C C8 MPG . . . K 4 -16.649 -6.652 5.397 1 54.05 ? C8 MPG 410 A 1 
HETATM 8 C C9 MPG . . . K 4 -16.681 -8.025 4.732 1 59.71 ? C9 MPG 410 A 1 
HETATM 9 C C10 MPG . . . K 4 -17.03 -8.193 3.47 1 54.97 ? C10 MPG 410 A 1 
HETATM 10 C C11 MPG . . . K 4 -17.425 -7.024 2.579 1 55.75 ? C11 MPG 410 A 1 
HETATM 11 C C12 MPG . . . K 4 -17 -7.329 1.142 1 52.7 ? C12 MPG 410 A 1 
HETATM 12 C C13 MPG . . . K 4 -18.197 -7.914 0.394 1 59.95 ? C13 MPG 410 A 1 
HETATM 13 C C14 MPG . . . K 4 -18.695 -6.926 -0.658 1 53.87 ? C14 MPG 410 A 1 
HETATM 14 C C15 MPG . . . K 4 -18.688 -7.618 -2.018 1 54.24 ? C15 MPG 410 A 1 
HETATM 15 C C16 MPG . . . K 4 -18.65 -6.55 -3.107 1 59.72 ? C16 MPG 410 A 1 
HETATM 16 C C17 MPG . . . K 4 -18.412 -7.212 -4.464 1 67.85 ? C17 MPG 410 A 1 
HETATM 17 C C18 MPG . . . K 4 -17.586 -6.271 -5.343 1 68.05 ? C18 MPG 410 A 1 
HETATM 18 O O1 MPG . . . K 4 -16.641 -4.208 13.419 1 93.54 ? O1 MPG 410 A 1 
HETATM 19 C C1 MPG . . . K 4 -16.84 -4.789 12.157 1 80.04 ? C1 MPG 410 A 1 
HETATM 20 C CXD MPG . . . K 4 -16.265 -5.873 15.33 1 91.56 ? CXD MPG 410 A 1 
HETATM 21 O O2 MPG . . . K 4 -16.092 -5.419 16.648 1 89.75 ? O2 MPG 410 A 1 
HETATM 22 C C21 MPG . . . K 4 -14.887 -6.052 14.687 1 89.4 ? C21 MPG 410 A 1 
HETATM 23 O O3 MPG . . . K 4 -14.979 -6.956 13.619 1 88.2 ? O3 MPG 410 A 1 
HETATM 24 O O4 MPG . . . K 4 -18.251 -4.66 14.92 1 84.02 ? O4 MPG 410 A 1 
HETATM 25 C CX3 MPG . . . K 4 -17.142 -4.884 14.547 1 90.31 ? CX3 MPG 410 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#