data_8J25 # _model_server_result.job_id MbUeOINGMNeca_m0QOBw0g _model_server_result.datetime_utc '2024-11-23 04:10:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j25 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2502}' # _entry.id 8J25 # _exptl.entry_id 8J25 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8J25 _cell.length_a 121.568 _cell.length_b 121.568 _cell.length_c 161.332 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J25 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC B 1611 MAL 2 n B GLC 2 B 2 GLC B 1611 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 GLC . B GLC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? metalc ? metalc1 A SG CYS 381 A CYS 189 1_555 C ZN ZN . A ZN 2501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 A NE2 HIS 386 A HIS 194 1_555 C ZN ZN . A ZN 2501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc3 A SG CYS 396 A CYS 204 1_555 D ZN ZN . A ZN 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 A SG CYS 399 A CYS 207 1_555 D ZN ZN . A ZN 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc5 A SG CYS 404 A CYS 212 1_555 C ZN ZN . A ZN 2501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc6 A SG CYS 407 A CYS 215 1_555 C ZN ZN . A ZN 2501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc7 A ND1 HIS 414 A HIS 222 1_555 D ZN ZN . A ZN 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc8 A SG CYS 419 A CYS 227 1_555 D ZN ZN . A ZN 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8J25 _atom_sites.fract_transf_matrix[1][1] 0.008226 _atom_sites.fract_transf_matrix[1][2] 0.004749 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009498 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 2501 2501 ZN ZN . D 3 ZN A 1 2502 3512 ZN ZN . E 4 HOH A 1 2601 46 HOH HOH . E 4 HOH A 2 2602 4 HOH HOH . E 4 HOH A 3 2603 9 HOH HOH . E 4 HOH A 4 2604 42 HOH HOH . E 4 HOH A 5 2605 43 HOH HOH . E 4 HOH A 6 2606 1 HOH HOH . E 4 HOH A 7 2607 17 HOH HOH . E 4 HOH A 8 2608 20 HOH HOH . E 4 HOH A 9 2609 44 HOH HOH . E 4 HOH A 10 2610 6 HOH HOH . E 4 HOH A 11 2611 34 HOH HOH . E 4 HOH A 12 2612 5 HOH HOH . E 4 HOH A 13 2613 29 HOH HOH . E 4 HOH A 14 2614 47 HOH HOH . E 4 HOH A 15 2615 22 HOH HOH . E 4 HOH A 16 2616 2 HOH HOH . E 4 HOH A 17 2617 7 HOH HOH . E 4 HOH A 18 2618 3 HOH HOH . E 4 HOH A 19 2619 41 HOH HOH . E 4 HOH A 20 2620 35 HOH HOH . E 4 HOH A 21 2621 19 HOH HOH . E 4 HOH A 22 2622 15 HOH HOH . E 4 HOH A 23 2623 16 HOH HOH . E 4 HOH A 24 2624 33 HOH HOH . E 4 HOH A 25 2625 31 HOH HOH . E 4 HOH A 26 2626 21 HOH HOH . E 4 HOH A 27 2627 14 HOH HOH . E 4 HOH A 28 2628 48 HOH HOH . E 4 HOH A 29 2629 18 HOH HOH . E 4 HOH A 30 2630 10 HOH HOH . E 4 HOH A 31 2631 12 HOH HOH . E 4 HOH A 32 2632 24 HOH HOH . E 4 HOH A 33 2633 45 HOH HOH . E 4 HOH A 34 2634 13 HOH HOH . E 4 HOH A 35 2635 38 HOH HOH . E 4 HOH A 36 2636 26 HOH HOH . E 4 HOH A 37 2637 37 HOH HOH . E 4 HOH A 38 2638 23 HOH HOH . E 4 HOH A 39 2639 25 HOH HOH . E 4 HOH A 40 2640 39 HOH HOH . E 4 HOH A 41 2641 30 HOH HOH . E 4 HOH A 42 2642 40 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -11.244 _atom_site.Cartn_y -60.677 _atom_site.Cartn_z -14.638 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 67.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 377 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #