data_8J2V # _model_server_result.job_id m0NR4d_TxpZZTHg3rgmaQw _model_server_result.datetime_utc '2024-11-08 07:36:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j2v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8J2V # _exptl.entry_id 8J2V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J2V _cell.length_a 83.58 _cell.length_b 103.66 _cell.length_c 54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8J2V _atom_sites.fract_transf_matrix[1][1] 0.011965 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T83 A 1 501 501 T83 T83 . C 3 GOL A 1 502 711 GOL GOL . D 4 HOH A 1 601 601 HOH HOH . D 4 HOH A 2 602 602 HOH HOH . D 4 HOH A 3 603 603 HOH HOH . D 4 HOH A 4 604 604 HOH HOH . D 4 HOH A 5 605 605 HOH HOH . D 4 HOH A 6 606 606 HOH HOH . D 4 HOH A 7 607 607 HOH HOH . D 4 HOH A 8 608 608 HOH HOH . D 4 HOH A 9 609 609 HOH HOH . D 4 HOH A 10 610 610 HOH HOH . D 4 HOH A 11 611 611 HOH HOH . D 4 HOH A 12 612 612 HOH HOH . D 4 HOH A 13 613 613 HOH HOH . D 4 HOH A 14 614 614 HOH HOH . D 4 HOH A 15 615 615 HOH HOH . D 4 HOH A 16 616 616 HOH HOH . D 4 HOH A 17 617 617 HOH HOH . D 4 HOH A 18 618 618 HOH HOH . D 4 HOH A 19 619 619 HOH HOH . D 4 HOH A 20 620 620 HOH HOH . D 4 HOH A 21 621 621 HOH HOH . D 4 HOH A 22 622 622 HOH HOH . D 4 HOH A 23 623 623 HOH HOH . D 4 HOH A 24 624 624 HOH HOH . D 4 HOH A 25 625 625 HOH HOH . D 4 HOH A 26 626 626 HOH HOH . D 4 HOH A 27 627 627 HOH HOH . D 4 HOH A 28 628 628 HOH HOH . D 4 HOH A 29 629 629 HOH HOH . D 4 HOH A 30 630 630 HOH HOH . D 4 HOH A 31 631 631 HOH HOH . D 4 HOH A 32 632 632 HOH HOH . D 4 HOH A 33 633 633 HOH HOH . D 4 HOH A 34 634 634 HOH HOH . D 4 HOH A 35 635 635 HOH HOH . D 4 HOH A 36 636 668 HOH HOH . D 4 HOH A 37 637 636 HOH HOH . D 4 HOH A 38 638 637 HOH HOH . D 4 HOH A 39 639 638 HOH HOH . D 4 HOH A 40 640 639 HOH HOH . D 4 HOH A 41 641 640 HOH HOH . D 4 HOH A 42 642 641 HOH HOH . D 4 HOH A 43 643 642 HOH HOH . D 4 HOH A 44 644 643 HOH HOH . D 4 HOH A 45 645 644 HOH HOH . D 4 HOH A 46 646 645 HOH HOH . D 4 HOH A 47 647 646 HOH HOH . D 4 HOH A 48 648 647 HOH HOH . D 4 HOH A 49 649 648 HOH HOH . D 4 HOH A 50 650 649 HOH HOH . D 4 HOH A 51 651 650 HOH HOH . D 4 HOH A 52 652 651 HOH HOH . D 4 HOH A 53 653 652 HOH HOH . D 4 HOH A 54 654 653 HOH HOH . D 4 HOH A 55 655 654 HOH HOH . D 4 HOH A 56 656 655 HOH HOH . D 4 HOH A 57 657 656 HOH HOH . D 4 HOH A 58 658 657 HOH HOH . D 4 HOH A 59 659 658 HOH HOH . D 4 HOH A 60 660 659 HOH HOH . D 4 HOH A 61 661 660 HOH HOH . D 4 HOH A 62 662 661 HOH HOH . D 4 HOH A 63 663 662 HOH HOH . D 4 HOH A 64 664 663 HOH HOH . D 4 HOH A 65 665 664 HOH HOH . D 4 HOH A 66 666 665 HOH HOH . D 4 HOH A 67 667 666 HOH HOH . D 4 HOH A 68 668 667 HOH HOH . D 4 HOH A 69 669 669 HOH HOH . D 4 HOH A 70 670 670 HOH HOH . D 4 HOH A 71 671 671 HOH HOH . D 4 HOH A 72 672 672 HOH HOH . D 4 HOH A 73 673 673 HOH HOH . D 4 HOH A 74 674 674 HOH HOH . D 4 HOH A 75 675 675 HOH HOH . D 4 HOH A 76 676 677 HOH HOH . D 4 HOH A 77 677 678 HOH HOH . D 4 HOH A 78 678 679 HOH HOH . D 4 HOH A 79 679 680 HOH HOH . D 4 HOH A 80 680 681 HOH HOH . D 4 HOH A 81 681 682 HOH HOH . D 4 HOH A 82 682 683 HOH HOH . D 4 HOH A 83 683 684 HOH HOH . D 4 HOH A 84 684 685 HOH HOH . D 4 HOH A 85 685 676 HOH HOH . D 4 HOH A 86 686 686 HOH HOH . D 4 HOH A 87 687 687 HOH HOH . D 4 HOH A 88 688 688 HOH HOH . D 4 HOH A 89 689 689 HOH HOH . D 4 HOH A 90 690 690 HOH HOH . D 4 HOH A 91 691 691 HOH HOH . D 4 HOH A 92 692 692 HOH HOH . D 4 HOH A 93 693 693 HOH HOH . D 4 HOH A 94 694 694 HOH HOH . D 4 HOH A 95 695 695 HOH HOH . D 4 HOH A 96 696 696 HOH HOH . D 4 HOH A 97 697 697 HOH HOH . D 4 HOH A 98 698 698 HOH HOH . D 4 HOH A 99 699 699 HOH HOH . D 4 HOH A 100 700 700 HOH HOH . D 4 HOH A 101 701 701 HOH HOH . D 4 HOH A 102 702 702 HOH HOH . D 4 HOH A 103 703 703 HOH HOH . D 4 HOH A 104 704 704 HOH HOH . D 4 HOH A 105 705 705 HOH HOH . D 4 HOH A 106 706 706 HOH HOH . D 4 HOH A 107 707 709 HOH HOH . D 4 HOH A 108 708 707 HOH HOH . D 4 HOH A 109 709 708 HOH HOH . D 4 HOH A 110 710 710 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 36.702 -2.093 15.385 1 20 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . C 3 35.913 -3.216 15.76 1 20 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . C 3 35.877 -0.828 15.317 1 20 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . C 3 36.741 0.301 15.215 1 20 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . C 3 34.892 -0.823 14.169 1 20 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . C 3 35.539 -0.585 12.924 1 20 ? O3 GOL 502 A 1 HETATM 7 H H11 GOL . . . C 3 37.108 -2.261 14.502 1 20 ? H11 GOL 502 A 1 HETATM 8 H H12 GOL . . . C 3 37.428 -1.972 16.042 1 20 ? H12 GOL 502 A 1 HETATM 9 H HO1 GOL . . . C 3 35.267 -2.941 16.23 1 20 ? HO1 GOL 502 A 1 HETATM 10 H H2 GOL . . . C 3 35.367 -0.752 16.157 1 20 ? H2 GOL 502 A 1 HETATM 11 H HO2 GOL . . . C 3 37.458 0.12 15.629 1 20 ? HO2 GOL 502 A 1 HETATM 12 H H31 GOL . . . C 3 34.218 -0.119 14.325 1 20 ? H31 GOL 502 A 1 HETATM 13 H H32 GOL . . . C 3 34.429 -1.693 14.134 1 20 ? H32 GOL 502 A 1 HETATM 14 H HO3 GOL . . . C 3 36.312 -0.283 13.086 1 20 ? HO3 GOL 502 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #