data_8J3Z # _model_server_result.job_id hJLDY1ak9L7COIjoqiUJNg _model_server_result.datetime_utc '2025-07-31 03:44:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1403}' # _entry.id 8J3Z # _exptl.entry_id 8J3Z _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 350.492 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5Z)-7-{(1R,4S,5S,6R)-6-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-2-oxabicyclo[2.2.1]hept-5-yl}hept-5-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J3Z _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 452 A SER 452 1_555 E MG MG . A MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc2 A OE1 GLN 480 A GLN 480 1_555 E MG MG . A MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc3 A OG SER 1082 A SER 1082 1_555 C MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc4 B O3G ATP . A ATP 1401 1_555 C MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc5 B O2B ATP . A ATP 1401 1_555 C MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc6 B O3B ATP . A ATP 1401 1_555 C MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc7 E MG MG . A MG 1404 1_555 F O2B ATP . A ATP 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc8 E MG MG . A MG 1404 1_555 F O3B ATP . A ATP 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? # _chem_comp.formula 'C21 H34 O4' _chem_comp.formula_weight 350.492 _chem_comp.id PUC _chem_comp.mon_nstd_flag . _chem_comp.name '(5Z)-7-{(1R,4S,5S,6R)-6-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-2-oxabicyclo[2.2.1]hept-5-yl}hept-5-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '15-Hydroxy-11 alpha,9 alpha-(epoxymethano)prosta-5,13-dienoic Acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PUC doub 324 n n C1 C2 PUC sing 325 n n C1 O2 PUC sing 326 n n C2 C3 PUC sing 327 n n C2 H12 PUC sing 328 n n C2 H22 PUC sing 329 n n O2 H1O2 PUC sing 330 n n C3 C4 PUC sing 331 n n C3 H13 PUC sing 332 n n C3 H23 PUC sing 333 n n O3 C15 PUC sing 334 n n O3 H2O3 PUC sing 335 n n C4 C5 PUC sing 336 n n C4 H14 PUC sing 337 n n C4 H24 PUC sing 338 n n C5 C6 PUC doub 339 z n C5 H15 PUC sing 340 n n O5 C11 PUC sing 341 n n O5 C21 PUC sing 342 n n C6 C7 PUC sing 343 n n C6 H16 PUC sing 344 n n C7 C8 PUC sing 345 n n C7 H17 PUC sing 346 n n C7 H27 PUC sing 347 n n C8 C9 PUC sing 348 n n C8 C12 PUC sing 349 n n C8 H18 PUC sing 350 n n C9 C10 PUC sing 351 n n C9 C21 PUC sing 352 n n C9 H19 PUC sing 353 n n C10 C11 PUC sing 354 n n C10 H110 PUC sing 355 n n C10 H210 PUC sing 356 n n C11 C12 PUC sing 357 n n C11 H111 PUC sing 358 n n C12 C13 PUC sing 359 n n C12 H112 PUC sing 360 n n C13 C14 PUC doub 361 e n C13 H113 PUC sing 362 n n C14 C15 PUC sing 363 n n C14 H114 PUC sing 364 n n C15 C16 PUC sing 365 n n C15 H115 PUC sing 366 n n C16 C17 PUC sing 367 n n C16 H116 PUC sing 368 n n C16 H216 PUC sing 369 n n C17 C18 PUC sing 370 n n C17 H117 PUC sing 371 n n C17 H217 PUC sing 372 n n C18 C19 PUC sing 373 n n C18 H118 PUC sing 374 n n C18 H218 PUC sing 375 n n C19 C20 PUC sing 376 n n C19 H119 PUC sing 377 n n C19 H219 PUC sing 378 n n C20 H120 PUC sing 379 n n C20 H220 PUC sing 380 n n C20 H320 PUC sing 381 n n C21 H121 PUC sing 382 n n C21 H221 PUC sing 383 n n # _atom_sites.entry_id 8J3Z _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1401 1602 ATP ATP . C 3 MG A 1 1402 1604 MG MG . D 4 PUC A 1 1403 1701 PUC PUC . E 3 MG A 1 1404 1 MG MG . F 2 ATP A 1 1405 1602 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PUC . . . D 4 122.607 123.502 108.513 1 20 ? C1 PUC 1403 A 1 HETATM 2 O O1 PUC . . . D 4 123.036 124.649 108.638 1 20 ? O1 PUC 1403 A 1 HETATM 3 C C2 PUC . . . D 4 121.692 123.192 107.347 1 20 ? C2 PUC 1403 A 1 HETATM 4 O O2 PUC . . . D 4 122.895 122.588 109.285 1 20 ? O2 PUC 1403 A 1 HETATM 5 C C3 PUC . . . D 4 121.36 121.722 107.247 1 20 ? C3 PUC 1403 A 1 HETATM 6 O O3 PUC . . . D 4 122.126 119.472 112.837 1 20 ? O3 PUC 1403 A 1 HETATM 7 C C4 PUC . . . D 4 120.894 121.329 105.871 1 20 ? C4 PUC 1403 A 1 HETATM 8 C C5 PUC . . . D 4 120.346 119.946 105.89 1 20 ? C5 PUC 1403 A 1 HETATM 9 O O5 PUC . . . D 4 118.613 115.503 110.019 1 20 ? O5 PUC 1403 A 1 HETATM 10 C C6 PUC . . . D 4 119.71 119.447 106.926 1 20 ? C6 PUC 1403 A 1 HETATM 11 C C7 PUC . . . D 4 120.007 118.165 107.62 1 20 ? C7 PUC 1403 A 1 HETATM 12 C C8 PUC . . . D 4 119.566 118.153 109.077 1 20 ? C8 PUC 1403 A 1 HETATM 13 C C9 PUC . . . D 4 118.121 117.677 109.317 1 20 ? C9 PUC 1403 A 1 HETATM 14 C C10 PUC . . . D 4 118.131 117.578 110.837 1 20 ? C10 PUC 1403 A 1 HETATM 15 C C11 PUC . . . D 4 119.229 116.528 110.816 1 20 ? C11 PUC 1403 A 1 HETATM 16 C C12 PUC . . . D 4 120.341 117.192 109.975 1 20 ? C12 PUC 1403 A 1 HETATM 17 C C13 PUC . . . D 4 121.385 117.877 110.807 1 20 ? C13 PUC 1403 A 1 HETATM 18 C C14 PUC . . . D 4 122.026 118.985 110.512 1 20 ? C14 PUC 1403 A 1 HETATM 19 C C15 PUC . . . D 4 122.324 120.036 111.537 1 20 ? C15 PUC 1403 A 1 HETATM 20 C C16 PUC . . . D 4 123.733 120.608 111.463 1 20 ? C16 PUC 1403 A 1 HETATM 21 C C17 PUC . . . D 4 123.831 122.035 111.976 1 20 ? C17 PUC 1403 A 1 HETATM 22 C C18 PUC . . . D 4 124.702 122.209 113.184 1 20 ? C18 PUC 1403 A 1 HETATM 23 C C19 PUC . . . D 4 125.946 121.361 113.167 1 20 ? C19 PUC 1403 A 1 HETATM 24 C C20 PUC . . . D 4 127.129 121.961 113.895 1 20 ? C20 PUC 1403 A 1 HETATM 25 C C21 PUC . . . D 4 117.991 116.22 108.916 1 20 ? C21 PUC 1403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #