data_8J40 # _model_server_result.job_id Kj-nyg5UNw4E8Q4clMwi-g _model_server_result.datetime_utc '2024-11-14 17:57:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j40 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 8J40 # _exptl.entry_id 8J40 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J40 _cell.length_a 128.548 _cell.length_b 128.548 _cell.length_c 128.548 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J40 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall 'I 2 2 3' _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 161 n n C1 C2 GOL sing 162 n n C1 H11 GOL sing 163 n n C1 H12 GOL sing 164 n n O1 HO1 GOL sing 165 n n C2 O2 GOL sing 166 n n C2 C3 GOL sing 167 n n C2 H2 GOL sing 168 n n O2 HO2 GOL sing 169 n n C3 O3 GOL sing 170 n n C3 H31 GOL sing 171 n n C3 H32 GOL sing 172 n n O3 HO3 GOL sing 173 n n # _atom_sites.entry_id 8J40 _atom_sites.fract_transf_matrix[1][1] 0.007779 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLM A 1 301 1 CLM CLM . C 2 CLM A 1 302 3 CLM CLM . D 2 CLM A 1 303 4 CLM CLM . E 2 CLM A 1 304 5 CLM CLM . F 3 GOL A 1 305 1 GOL GOL . G 3 GOL A 1 306 2 GOL GOL . H 3 GOL A 1 307 3 GOL GOL . I 3 GOL A 1 308 4 GOL GOL . J 4 SO4 A 1 309 1 SO4 SO4 . K 5 HOH A 1 401 146 HOH HOH . K 5 HOH A 2 402 140 HOH HOH . K 5 HOH A 3 403 271 HOH HOH . K 5 HOH A 4 404 239 HOH HOH . K 5 HOH A 5 405 241 HOH HOH . K 5 HOH A 6 406 174 HOH HOH . K 5 HOH A 7 407 125 HOH HOH . K 5 HOH A 8 408 117 HOH HOH . K 5 HOH A 9 409 292 HOH HOH . K 5 HOH A 10 410 104 HOH HOH . K 5 HOH A 11 411 12 HOH HOH . K 5 HOH A 12 412 91 HOH HOH . K 5 HOH A 13 413 157 HOH HOH . K 5 HOH A 14 414 152 HOH HOH . K 5 HOH A 15 415 94 HOH HOH . K 5 HOH A 16 416 39 HOH HOH . K 5 HOH A 17 417 148 HOH HOH . K 5 HOH A 18 418 150 HOH HOH . K 5 HOH A 19 419 110 HOH HOH . K 5 HOH A 20 420 1 HOH HOH . K 5 HOH A 21 421 96 HOH HOH . K 5 HOH A 22 422 129 HOH HOH . K 5 HOH A 23 423 85 HOH HOH . K 5 HOH A 24 424 54 HOH HOH . K 5 HOH A 25 425 105 HOH HOH . K 5 HOH A 26 426 228 HOH HOH . K 5 HOH A 27 427 5 HOH HOH . K 5 HOH A 28 428 65 HOH HOH . K 5 HOH A 29 429 122 HOH HOH . K 5 HOH A 30 430 10 HOH HOH . K 5 HOH A 31 431 7 HOH HOH . K 5 HOH A 32 432 114 HOH HOH . K 5 HOH A 33 433 13 HOH HOH . K 5 HOH A 34 434 93 HOH HOH . K 5 HOH A 35 435 86 HOH HOH . K 5 HOH A 36 436 58 HOH HOH . K 5 HOH A 37 437 109 HOH HOH . K 5 HOH A 38 438 169 HOH HOH . K 5 HOH A 39 439 184 HOH HOH . K 5 HOH A 40 440 3 HOH HOH . K 5 HOH A 41 441 134 HOH HOH . K 5 HOH A 42 442 30 HOH HOH . K 5 HOH A 43 443 232 HOH HOH . K 5 HOH A 44 444 76 HOH HOH . K 5 HOH A 45 445 42 HOH HOH . K 5 HOH A 46 446 57 HOH HOH . K 5 HOH A 47 447 196 HOH HOH . K 5 HOH A 48 448 195 HOH HOH . K 5 HOH A 49 449 151 HOH HOH . K 5 HOH A 50 450 26 HOH HOH . K 5 HOH A 51 451 6 HOH HOH . K 5 HOH A 52 452 60 HOH HOH . K 5 HOH A 53 453 235 HOH HOH . K 5 HOH A 54 454 237 HOH HOH . K 5 HOH A 55 455 37 HOH HOH . K 5 HOH A 56 456 137 HOH HOH . K 5 HOH A 57 457 56 HOH HOH . K 5 HOH A 58 458 309 HOH HOH . K 5 HOH A 59 459 296 HOH HOH . K 5 HOH A 60 460 133 HOH HOH . K 5 HOH A 61 461 64 HOH HOH . K 5 HOH A 62 462 257 HOH HOH . K 5 HOH A 63 463 4 HOH HOH . K 5 HOH A 64 464 190 HOH HOH . K 5 HOH A 65 465 19 HOH HOH . K 5 HOH A 66 466 55 HOH HOH . K 5 HOH A 67 467 20 HOH HOH . K 5 HOH A 68 468 220 HOH HOH . K 5 HOH A 69 469 21 HOH HOH . K 5 HOH A 70 470 14 HOH HOH . K 5 HOH A 71 471 18 HOH HOH . K 5 HOH A 72 472 121 HOH HOH . K 5 HOH A 73 473 36 HOH HOH . K 5 HOH A 74 474 49 HOH HOH . K 5 HOH A 75 475 293 HOH HOH . K 5 HOH A 76 476 168 HOH HOH . K 5 HOH A 77 477 207 HOH HOH . K 5 HOH A 78 478 52 HOH HOH . K 5 HOH A 79 479 28 HOH HOH . K 5 HOH A 80 480 48 HOH HOH . K 5 HOH A 81 481 206 HOH HOH . K 5 HOH A 82 482 44 HOH HOH . K 5 HOH A 83 483 66 HOH HOH . K 5 HOH A 84 484 261 HOH HOH . K 5 HOH A 85 485 17 HOH HOH . K 5 HOH A 86 486 9 HOH HOH . K 5 HOH A 87 487 100 HOH HOH . K 5 HOH A 88 488 89 HOH HOH . K 5 HOH A 89 489 102 HOH HOH . K 5 HOH A 90 490 32 HOH HOH . K 5 HOH A 91 491 98 HOH HOH . K 5 HOH A 92 492 50 HOH HOH . K 5 HOH A 93 493 255 HOH HOH . K 5 HOH A 94 494 68 HOH HOH . K 5 HOH A 95 495 2 HOH HOH . K 5 HOH A 96 496 45 HOH HOH . K 5 HOH A 97 497 231 HOH HOH . K 5 HOH A 98 498 301 HOH HOH . K 5 HOH A 99 499 15 HOH HOH . K 5 HOH A 100 500 88 HOH HOH . K 5 HOH A 101 501 90 HOH HOH . K 5 HOH A 102 502 74 HOH HOH . K 5 HOH A 103 503 73 HOH HOH . K 5 HOH A 104 504 179 HOH HOH . K 5 HOH A 105 505 22 HOH HOH . K 5 HOH A 106 506 72 HOH HOH . K 5 HOH A 107 507 162 HOH HOH . K 5 HOH A 108 508 16 HOH HOH . K 5 HOH A 109 509 23 HOH HOH . K 5 HOH A 110 510 147 HOH HOH . K 5 HOH A 111 511 108 HOH HOH . K 5 HOH A 112 512 34 HOH HOH . K 5 HOH A 113 513 143 HOH HOH . K 5 HOH A 114 514 113 HOH HOH . K 5 HOH A 115 515 67 HOH HOH . K 5 HOH A 116 516 101 HOH HOH . K 5 HOH A 117 517 35 HOH HOH . K 5 HOH A 118 518 75 HOH HOH . K 5 HOH A 119 519 8 HOH HOH . K 5 HOH A 120 520 238 HOH HOH . K 5 HOH A 121 521 29 HOH HOH . K 5 HOH A 122 522 256 HOH HOH . K 5 HOH A 123 523 167 HOH HOH . K 5 HOH A 124 524 138 HOH HOH . K 5 HOH A 125 525 33 HOH HOH . K 5 HOH A 126 526 197 HOH HOH . K 5 HOH A 127 527 171 HOH HOH . K 5 HOH A 128 528 242 HOH HOH . K 5 HOH A 129 529 208 HOH HOH . K 5 HOH A 130 530 47 HOH HOH . K 5 HOH A 131 531 144 HOH HOH . K 5 HOH A 132 532 182 HOH HOH . K 5 HOH A 133 533 99 HOH HOH . K 5 HOH A 134 534 106 HOH HOH . K 5 HOH A 135 535 79 HOH HOH . K 5 HOH A 136 536 40 HOH HOH . K 5 HOH A 137 537 297 HOH HOH . K 5 HOH A 138 538 31 HOH HOH . K 5 HOH A 139 539 97 HOH HOH . K 5 HOH A 140 540 61 HOH HOH . K 5 HOH A 141 541 81 HOH HOH . K 5 HOH A 142 542 71 HOH HOH . K 5 HOH A 143 543 284 HOH HOH . K 5 HOH A 144 544 24 HOH HOH . K 5 HOH A 145 545 149 HOH HOH . K 5 HOH A 146 546 260 HOH HOH . K 5 HOH A 147 547 107 HOH HOH . K 5 HOH A 148 548 254 HOH HOH . K 5 HOH A 149 549 59 HOH HOH . K 5 HOH A 150 550 69 HOH HOH . K 5 HOH A 151 551 38 HOH HOH . K 5 HOH A 152 552 63 HOH HOH . K 5 HOH A 153 553 27 HOH HOH . K 5 HOH A 154 554 200 HOH HOH . K 5 HOH A 155 555 11 HOH HOH . K 5 HOH A 156 556 186 HOH HOH . K 5 HOH A 157 557 268 HOH HOH . K 5 HOH A 158 558 112 HOH HOH . K 5 HOH A 159 559 130 HOH HOH . K 5 HOH A 160 560 139 HOH HOH . K 5 HOH A 161 561 302 HOH HOH . K 5 HOH A 162 562 82 HOH HOH . K 5 HOH A 163 563 41 HOH HOH . K 5 HOH A 164 564 295 HOH HOH . K 5 HOH A 165 565 304 HOH HOH . K 5 HOH A 166 566 120 HOH HOH . K 5 HOH A 167 567 83 HOH HOH . K 5 HOH A 168 568 131 HOH HOH . K 5 HOH A 169 569 111 HOH HOH . K 5 HOH A 170 570 78 HOH HOH . K 5 HOH A 171 571 164 HOH HOH . K 5 HOH A 172 572 127 HOH HOH . K 5 HOH A 173 573 181 HOH HOH . K 5 HOH A 174 574 87 HOH HOH . K 5 HOH A 175 575 216 HOH HOH . K 5 HOH A 176 576 244 HOH HOH . K 5 HOH A 177 577 287 HOH HOH . K 5 HOH A 178 578 51 HOH HOH . K 5 HOH A 179 579 153 HOH HOH . K 5 HOH A 180 580 53 HOH HOH . K 5 HOH A 181 581 165 HOH HOH . K 5 HOH A 182 582 306 HOH HOH . K 5 HOH A 183 583 240 HOH HOH . K 5 HOH A 184 584 70 HOH HOH . K 5 HOH A 185 585 92 HOH HOH . K 5 HOH A 186 586 25 HOH HOH . K 5 HOH A 187 587 62 HOH HOH . K 5 HOH A 188 588 294 HOH HOH . K 5 HOH A 189 589 175 HOH HOH . K 5 HOH A 190 590 136 HOH HOH . K 5 HOH A 191 591 248 HOH HOH . K 5 HOH A 192 592 95 HOH HOH . K 5 HOH A 193 593 249 HOH HOH . K 5 HOH A 194 594 77 HOH HOH . K 5 HOH A 195 595 115 HOH HOH . K 5 HOH A 196 596 183 HOH HOH . K 5 HOH A 197 597 43 HOH HOH . K 5 HOH A 198 598 156 HOH HOH . K 5 HOH A 199 599 303 HOH HOH . K 5 HOH A 200 600 214 HOH HOH . K 5 HOH A 201 601 267 HOH HOH . K 5 HOH A 202 602 155 HOH HOH . K 5 HOH A 203 603 119 HOH HOH . K 5 HOH A 204 604 221 HOH HOH . K 5 HOH A 205 605 188 HOH HOH . K 5 HOH A 206 606 201 HOH HOH . K 5 HOH A 207 607 234 HOH HOH . K 5 HOH A 208 608 194 HOH HOH . K 5 HOH A 209 609 278 HOH HOH . K 5 HOH A 210 610 253 HOH HOH . K 5 HOH A 211 611 285 HOH HOH . K 5 HOH A 212 612 118 HOH HOH . K 5 HOH A 213 613 275 HOH HOH . K 5 HOH A 214 614 230 HOH HOH . K 5 HOH A 215 615 236 HOH HOH . K 5 HOH A 216 616 116 HOH HOH . K 5 HOH A 217 617 128 HOH HOH . K 5 HOH A 218 618 198 HOH HOH . K 5 HOH A 219 619 187 HOH HOH . K 5 HOH A 220 620 84 HOH HOH . K 5 HOH A 221 621 178 HOH HOH . K 5 HOH A 222 622 211 HOH HOH . K 5 HOH A 223 623 227 HOH HOH . K 5 HOH A 224 624 233 HOH HOH . K 5 HOH A 225 625 265 HOH HOH . K 5 HOH A 226 626 142 HOH HOH . K 5 HOH A 227 627 291 HOH HOH . K 5 HOH A 228 628 250 HOH HOH . K 5 HOH A 229 629 280 HOH HOH . K 5 HOH A 230 630 251 HOH HOH . K 5 HOH A 231 631 135 HOH HOH . K 5 HOH A 232 632 281 HOH HOH . K 5 HOH A 233 633 123 HOH HOH . K 5 HOH A 234 634 166 HOH HOH . K 5 HOH A 235 635 219 HOH HOH . K 5 HOH A 236 636 218 HOH HOH . K 5 HOH A 237 637 199 HOH HOH . K 5 HOH A 238 638 288 HOH HOH . K 5 HOH A 239 639 159 HOH HOH . K 5 HOH A 240 640 246 HOH HOH . K 5 HOH A 241 641 172 HOH HOH . K 5 HOH A 242 642 259 HOH HOH . K 5 HOH A 243 643 126 HOH HOH . K 5 HOH A 244 644 245 HOH HOH . K 5 HOH A 245 645 229 HOH HOH . K 5 HOH A 246 646 189 HOH HOH . K 5 HOH A 247 647 264 HOH HOH . K 5 HOH A 248 648 141 HOH HOH . K 5 HOH A 249 649 215 HOH HOH . K 5 HOH A 250 650 154 HOH HOH . K 5 HOH A 251 651 191 HOH HOH . K 5 HOH A 252 652 203 HOH HOH . K 5 HOH A 253 653 224 HOH HOH . K 5 HOH A 254 654 225 HOH HOH . K 5 HOH A 255 655 209 HOH HOH . K 5 HOH A 256 656 266 HOH HOH . K 5 HOH A 257 657 273 HOH HOH . K 5 HOH A 258 658 290 HOH HOH . K 5 HOH A 259 659 305 HOH HOH . K 5 HOH A 260 660 308 HOH HOH . K 5 HOH A 261 661 192 HOH HOH . K 5 HOH A 262 662 145 HOH HOH . K 5 HOH A 263 663 223 HOH HOH . K 5 HOH A 264 664 46 HOH HOH . K 5 HOH A 265 665 212 HOH HOH . K 5 HOH A 266 666 160 HOH HOH . K 5 HOH A 267 667 258 HOH HOH . K 5 HOH A 268 668 205 HOH HOH . K 5 HOH A 269 669 204 HOH HOH . K 5 HOH A 270 670 289 HOH HOH . K 5 HOH A 271 671 176 HOH HOH . K 5 HOH A 272 672 132 HOH HOH . K 5 HOH A 273 673 103 HOH HOH . K 5 HOH A 274 674 193 HOH HOH . K 5 HOH A 275 675 298 HOH HOH . K 5 HOH A 276 676 270 HOH HOH . K 5 HOH A 277 677 286 HOH HOH . K 5 HOH A 278 678 170 HOH HOH . K 5 HOH A 279 679 185 HOH HOH . K 5 HOH A 280 680 161 HOH HOH . K 5 HOH A 281 681 262 HOH HOH . K 5 HOH A 282 682 252 HOH HOH . K 5 HOH A 283 683 269 HOH HOH . K 5 HOH A 284 684 124 HOH HOH . K 5 HOH A 285 685 272 HOH HOH . K 5 HOH A 286 686 80 HOH HOH . K 5 HOH A 287 687 217 HOH HOH . K 5 HOH A 288 688 307 HOH HOH . K 5 HOH A 289 689 279 HOH HOH . K 5 HOH A 290 690 282 HOH HOH . K 5 HOH A 291 691 243 HOH HOH . K 5 HOH A 292 692 276 HOH HOH . K 5 HOH A 293 693 247 HOH HOH . K 5 HOH A 294 694 277 HOH HOH . K 5 HOH A 295 695 180 HOH HOH . K 5 HOH A 296 696 210 HOH HOH . K 5 HOH A 297 697 177 HOH HOH . K 5 HOH A 298 698 173 HOH HOH . K 5 HOH A 299 699 222 HOH HOH . K 5 HOH A 300 700 163 HOH HOH . K 5 HOH A 301 701 263 HOH HOH . K 5 HOH A 302 702 202 HOH HOH . K 5 HOH A 303 703 213 HOH HOH . K 5 HOH A 304 704 283 HOH HOH . K 5 HOH A 305 705 158 HOH HOH . K 5 HOH A 306 706 300 HOH HOH . K 5 HOH A 307 707 310 HOH HOH . K 5 HOH A 308 708 226 HOH HOH . K 5 HOH A 309 709 299 HOH HOH . K 5 HOH A 310 710 274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 8.918 16.807 23.111 1 39.84 ? C1 GOL 307 A 1 HETATM 2 O O1 GOL . . . H 3 9.479 16.256 21.96 1 48.52 ? O1 GOL 307 A 1 HETATM 3 C C2 GOL . . . H 3 10.066 17.566 23.861 1 38.28 ? C2 GOL 307 A 1 HETATM 4 O O2 GOL . . . H 3 9.595 18.333 24.935 1 45.55 ? O2 GOL 307 A 1 HETATM 5 C C3 GOL . . . H 3 10.856 18.388 22.773 1 37.65 ? C3 GOL 307 A 1 HETATM 6 O O3 GOL . . . H 3 11.734 19.266 23.47 1 36.56 ? O3 GOL 307 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #