data_8J44 # _model_server_result.job_id IevDCZH15yYX0ihT_PPolg _model_server_result.datetime_utc '2024-11-27 16:40:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j44 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 8J44 # _exptl.entry_id 8J44 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.05 _cell.angle_gamma 90 _cell.entry_id 8J44 _cell.length_a 69.732 _cell.length_b 55.772 _cell.length_c 86.053 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J44 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 8J44 _atom_sites.fract_transf_matrix[1][1] 0.014341 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004126 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 301 1 NAP NAP . D 2 NAP B 1 301 2 NAP NAP . E 3 HOH A 1 401 6 HOH HOH . E 3 HOH A 2 402 57 HOH HOH . E 3 HOH A 3 403 113 HOH HOH . E 3 HOH A 4 404 52 HOH HOH . E 3 HOH A 5 405 139 HOH HOH . E 3 HOH A 6 406 122 HOH HOH . E 3 HOH A 7 407 56 HOH HOH . E 3 HOH A 8 408 1 HOH HOH . E 3 HOH A 9 409 62 HOH HOH . E 3 HOH A 10 410 58 HOH HOH . E 3 HOH A 11 411 143 HOH HOH . E 3 HOH A 12 412 93 HOH HOH . E 3 HOH A 13 413 84 HOH HOH . E 3 HOH A 14 414 47 HOH HOH . E 3 HOH A 15 415 30 HOH HOH . E 3 HOH A 16 416 3 HOH HOH . E 3 HOH A 17 417 95 HOH HOH . E 3 HOH A 18 418 49 HOH HOH . E 3 HOH A 19 419 94 HOH HOH . E 3 HOH A 20 420 75 HOH HOH . E 3 HOH A 21 421 27 HOH HOH . E 3 HOH A 22 422 109 HOH HOH . E 3 HOH A 23 423 135 HOH HOH . E 3 HOH A 24 424 26 HOH HOH . E 3 HOH A 25 425 119 HOH HOH . E 3 HOH A 26 426 24 HOH HOH . E 3 HOH A 27 427 118 HOH HOH . E 3 HOH A 28 428 127 HOH HOH . E 3 HOH A 29 429 87 HOH HOH . E 3 HOH A 30 430 9 HOH HOH . E 3 HOH A 31 431 46 HOH HOH . E 3 HOH A 32 432 121 HOH HOH . E 3 HOH A 33 433 125 HOH HOH . E 3 HOH A 34 434 103 HOH HOH . E 3 HOH A 35 435 105 HOH HOH . E 3 HOH A 36 436 74 HOH HOH . E 3 HOH A 37 437 40 HOH HOH . E 3 HOH A 38 438 22 HOH HOH . E 3 HOH A 39 439 102 HOH HOH . E 3 HOH A 40 440 64 HOH HOH . E 3 HOH A 41 441 4 HOH HOH . E 3 HOH A 42 442 124 HOH HOH . E 3 HOH A 43 443 86 HOH HOH . E 3 HOH A 44 444 104 HOH HOH . E 3 HOH A 45 445 51 HOH HOH . E 3 HOH A 46 446 120 HOH HOH . E 3 HOH A 47 447 5 HOH HOH . E 3 HOH A 48 448 126 HOH HOH . E 3 HOH A 49 449 50 HOH HOH . E 3 HOH A 50 450 29 HOH HOH . E 3 HOH A 51 451 140 HOH HOH . E 3 HOH A 52 452 8 HOH HOH . E 3 HOH A 53 453 112 HOH HOH . E 3 HOH A 54 454 128 HOH HOH . E 3 HOH A 55 455 117 HOH HOH . E 3 HOH A 56 456 129 HOH HOH . E 3 HOH A 57 457 48 HOH HOH . E 3 HOH A 58 458 152 HOH HOH . E 3 HOH A 59 459 136 HOH HOH . E 3 HOH A 60 460 85 HOH HOH . E 3 HOH A 61 461 53 HOH HOH . E 3 HOH A 62 462 76 HOH HOH . E 3 HOH A 63 463 38 HOH HOH . E 3 HOH A 64 464 7 HOH HOH . E 3 HOH A 65 465 65 HOH HOH . E 3 HOH A 66 466 141 HOH HOH . E 3 HOH A 67 467 2 HOH HOH . E 3 HOH A 68 468 78 HOH HOH . E 3 HOH A 69 469 63 HOH HOH . E 3 HOH A 70 470 130 HOH HOH . E 3 HOH A 71 471 28 HOH HOH . E 3 HOH A 72 472 35 HOH HOH . F 3 HOH B 1 401 61 HOH HOH . F 3 HOH B 2 402 68 HOH HOH . F 3 HOH B 3 403 114 HOH HOH . F 3 HOH B 4 404 14 HOH HOH . F 3 HOH B 5 405 101 HOH HOH . F 3 HOH B 6 406 11 HOH HOH . F 3 HOH B 7 407 59 HOH HOH . F 3 HOH B 8 408 71 HOH HOH . F 3 HOH B 9 409 20 HOH HOH . F 3 HOH B 10 410 67 HOH HOH . F 3 HOH B 11 411 32 HOH HOH . F 3 HOH B 12 412 18 HOH HOH . F 3 HOH B 13 413 72 HOH HOH . F 3 HOH B 14 414 33 HOH HOH . F 3 HOH B 15 415 77 HOH HOH . F 3 HOH B 16 416 100 HOH HOH . F 3 HOH B 17 417 19 HOH HOH . F 3 HOH B 18 418 60 HOH HOH . F 3 HOH B 19 419 107 HOH HOH . F 3 HOH B 20 420 31 HOH HOH . F 3 HOH B 21 421 132 HOH HOH . F 3 HOH B 22 422 98 HOH HOH . F 3 HOH B 23 423 99 HOH HOH . F 3 HOH B 24 424 44 HOH HOH . F 3 HOH B 25 425 23 HOH HOH . F 3 HOH B 26 426 21 HOH HOH . F 3 HOH B 27 427 41 HOH HOH . F 3 HOH B 28 428 37 HOH HOH . F 3 HOH B 29 429 115 HOH HOH . F 3 HOH B 30 430 111 HOH HOH . F 3 HOH B 31 431 144 HOH HOH . F 3 HOH B 32 432 110 HOH HOH . F 3 HOH B 33 433 106 HOH HOH . F 3 HOH B 34 434 73 HOH HOH . F 3 HOH B 35 435 25 HOH HOH . F 3 HOH B 36 436 142 HOH HOH . F 3 HOH B 37 437 97 HOH HOH . F 3 HOH B 38 438 131 HOH HOH . F 3 HOH B 39 439 17 HOH HOH . F 3 HOH B 40 440 133 HOH HOH . F 3 HOH B 41 441 151 HOH HOH . F 3 HOH B 42 442 137 HOH HOH . F 3 HOH B 43 443 16 HOH HOH . F 3 HOH B 44 444 148 HOH HOH . F 3 HOH B 45 445 42 HOH HOH . F 3 HOH B 46 446 80 HOH HOH . F 3 HOH B 47 447 13 HOH HOH . F 3 HOH B 48 448 15 HOH HOH . F 3 HOH B 49 449 12 HOH HOH . F 3 HOH B 50 450 134 HOH HOH . F 3 HOH B 51 451 138 HOH HOH . F 3 HOH B 52 452 89 HOH HOH . F 3 HOH B 53 453 88 HOH HOH . F 3 HOH B 54 454 10 HOH HOH . F 3 HOH B 55 455 79 HOH HOH . F 3 HOH B 56 456 43 HOH HOH . F 3 HOH B 57 457 116 HOH HOH . F 3 HOH B 58 458 145 HOH HOH . F 3 HOH B 59 459 150 HOH HOH . F 3 HOH B 60 460 39 HOH HOH . F 3 HOH B 61 461 70 HOH HOH . F 3 HOH B 62 462 123 HOH HOH . F 3 HOH B 63 463 108 HOH HOH . F 3 HOH B 64 464 91 HOH HOH . F 3 HOH B 65 465 69 HOH HOH . F 3 HOH B 66 466 96 HOH HOH . F 3 HOH B 67 467 149 HOH HOH . F 3 HOH B 68 468 90 HOH HOH . F 3 HOH B 69 469 55 HOH HOH . F 3 HOH B 70 470 45 HOH HOH . F 3 HOH B 71 471 66 HOH HOH . F 3 HOH B 72 472 83 HOH HOH . F 3 HOH B 73 473 54 HOH HOH . F 3 HOH B 74 474 81 HOH HOH . F 3 HOH B 75 475 146 HOH HOH . F 3 HOH B 76 476 92 HOH HOH . F 3 HOH B 77 477 82 HOH HOH . F 3 HOH B 78 478 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . D 2 -8.854 13.823 63.974 1 26.77 ? PA NAP 301 B 1 HETATM 2 O O1A NAP . . . D 2 -9.485 12.485 63.65 1 24.62 ? O1A NAP 301 B 1 HETATM 3 O O2A NAP . . . D 2 -9.531 15.12 63.641 1 27.79 ? O2A NAP 301 B 1 HETATM 4 O O5B NAP . . . D 2 -8.447 13.895 65.54 1 26.04 ? O5B NAP 301 B 1 HETATM 5 C C5B NAP . . . D 2 -7.644 14.955 66.043 1 24.96 ? C5B NAP 301 B 1 HETATM 6 C C4B NAP . . . D 2 -7.186 14.642 67.461 1 25.03 ? C4B NAP 301 B 1 HETATM 7 O O4B NAP . . . D 2 -6.578 15.817 68.037 1 23.31 ? O4B NAP 301 B 1 HETATM 8 C C3B NAP . . . D 2 -8.333 14.265 68.425 1 24.63 ? C3B NAP 301 B 1 HETATM 9 O O3B NAP . . . D 2 -7.86 13.339 69.404 1 24.43 ? O3B NAP 301 B 1 HETATM 10 C C2B NAP . . . D 2 -8.663 15.609 69.056 1 23.86 ? C2B NAP 301 B 1 HETATM 11 O O2B NAP . . . D 2 -9.422 15.606 70.26 1 23.34 ? O2B NAP 301 B 1 HETATM 12 C C1B NAP . . . D 2 -7.247 16.08 69.264 1 23.55 ? C1B NAP 301 B 1 HETATM 13 N N9A NAP . . . D 2 -7.133 17.508 69.586 1 25.79 ? N9A NAP 301 B 1 HETATM 14 C C8A NAP . . . D 2 -7.234 18.545 68.735 1 26.15 ? C8A NAP 301 B 1 HETATM 15 N N7A NAP . . . D 2 -7.042 19.713 69.381 1 26.33 ? N7A NAP 301 B 1 HETATM 16 C C5A NAP . . . D 2 -6.812 19.407 70.669 1 24.94 ? C5A NAP 301 B 1 HETATM 17 C C6A NAP . . . D 2 -6.534 20.172 71.877 1 24.71 ? C6A NAP 301 B 1 HETATM 18 N N6A NAP . . . D 2 -6.46 21.513 71.778 1 23.94 ? N6A NAP 301 B 1 HETATM 19 N N1A NAP . . . D 2 -6.356 19.478 73.032 1 26.13 ? N1A NAP 301 B 1 HETATM 20 C C2A NAP . . . D 2 -6.419 18.134 73.099 1 25.59 ? C2A NAP 301 B 1 HETATM 21 N N3A NAP . . . D 2 -6.68 17.379 72.014 1 26 ? N3A NAP 301 B 1 HETATM 22 C C4A NAP . . . D 2 -6.869 17.96 70.806 1 25.39 ? C4A NAP 301 B 1 HETATM 23 O O3 NAP . . . D 2 -7.44 13.864 63.13 1 25.54 ? O3 NAP 301 B 1 HETATM 24 P PN NAP . . . D 2 -6.519 12.571 62.836 1 24.34 ? PN NAP 301 B 1 HETATM 25 O O1N NAP . . . D 2 -6.707 11.854 61.524 1 26.02 ? O1N NAP 301 B 1 HETATM 26 O O2N NAP . . . D 2 -6.587 11.688 64.068 1 25.27 ? O2N NAP 301 B 1 HETATM 27 O O5D NAP . . . D 2 -5.058 13.211 62.674 1 24.76 ? O5D NAP 301 B 1 HETATM 28 C C5D NAP . . . D 2 -4.145 13.429 63.739 1 25.55 ? C5D NAP 301 B 1 HETATM 29 C C4D NAP . . . D 2 -2.78 13.817 63.149 1 24.68 ? C4D NAP 301 B 1 HETATM 30 O O4D NAP . . . D 2 -2.32 12.752 62.324 1 23.05 ? O4D NAP 301 B 1 HETATM 31 C C3D NAP . . . D 2 -2.858 15.09 62.279 1 26.55 ? C3D NAP 301 B 1 HETATM 32 O O3D NAP . . . D 2 -1.741 15.999 62.469 1 24.16 ? O3D NAP 301 B 1 HETATM 33 C C2D NAP . . . D 2 -2.905 14.502 60.884 1 24.79 ? C2D NAP 301 B 1 HETATM 34 O O2D NAP . . . D 2 -2.435 15.404 59.913 1 25.7 ? O2D NAP 301 B 1 HETATM 35 C C1D NAP . . . D 2 -1.999 13.287 61.041 1 24.81 ? C1D NAP 301 B 1 HETATM 36 N N1N NAP . . . D 2 -2.181 12.313 59.961 1 24.39 ? N1N NAP 301 B 1 HETATM 37 C C2N NAP . . . D 2 -3.415 11.831 59.704 1 26.47 ? C2N NAP 301 B 1 HETATM 38 C C3N NAP . . . D 2 -3.629 10.905 58.679 1 27.78 ? C3N NAP 301 B 1 HETATM 39 C C7N NAP . . . D 2 -4.998 10.33 58.385 1 30.52 ? C7N NAP 301 B 1 HETATM 40 O O7N NAP . . . D 2 -5.102 9.593 57.412 1 27.39 ? O7N NAP 301 B 1 HETATM 41 N N7N NAP . . . D 2 -6.052 10.605 59.185 1 31.24 ? N7N NAP 301 B 1 HETATM 42 C C4N NAP . . . D 2 -2.55 10.51 57.91 1 26.51 ? C4N NAP 301 B 1 HETATM 43 C C5N NAP . . . D 2 -1.305 11.041 58.178 1 25.14 ? C5N NAP 301 B 1 HETATM 44 C C6N NAP . . . D 2 -1.146 11.934 59.223 1 23.81 ? C6N NAP 301 B 1 HETATM 45 P P2B NAP . . . D 2 -11.011 15.349 70.311 1 23.65 ? P2B NAP 301 B 1 HETATM 46 O O1X NAP . . . D 2 -11.122 13.916 69.824 1 21.27 ? O1X NAP 301 B 1 HETATM 47 O O2X NAP . . . D 2 -11.275 15.658 71.763 1 23 ? O2X NAP 301 B 1 HETATM 48 O O3X NAP . . . D 2 -11.524 16.408 69.346 1 23.27 ? O3X NAP 301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #