data_8J4H # _model_server_result.job_id vl43bemkAIQMTzj2T6vsXA _model_server_result.datetime_utc '2025-03-06 03:28:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j4h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8J4H # _exptl.entry_id 8J4H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 198.173 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{R})-3-[3,4-bis(oxidanyl)phenyl]-2-oxidanyl-propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8J4H _cell.length_a 90.233 _cell.length_b 90.233 _cell.length_c 149.475 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J4H _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H10 O5' _chem_comp.formula_weight 198.173 _chem_comp.id TO9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{R})-3-[3,4-bis(oxidanyl)phenyl]-2-oxidanyl-propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Danshensu # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TO9 sing 293 n n C1 C2 TO9 sing 294 n n C1 C3 TO9 sing 295 n n C2 O2 TO9 doub 296 n n C2 O3 TO9 sing 297 n n C3 C4 TO9 sing 298 n n C9 C4 TO9 doub 299 n y C9 C8 TO9 sing 300 n y C4 C5 TO9 sing 301 n y C8 C7 TO9 doub 302 n y C5 C6 TO9 doub 303 n y C7 C6 TO9 sing 304 n y C7 O5 TO9 sing 305 n n C6 O4 TO9 sing 306 n n O3 H1 TO9 sing 307 n n C1 H2 TO9 sing 308 n n O1 H3 TO9 sing 309 n n C3 H4 TO9 sing 310 n n C3 H5 TO9 sing 311 n n C9 H6 TO9 sing 312 n n C8 H7 TO9 sing 313 n n O5 H8 TO9 sing 314 n n O4 H9 TO9 sing 315 n n C5 H10 TO9 sing 316 n n # _atom_sites.entry_id 8J4H _atom_sites.fract_transf_matrix[1][1] 0.011082 _atom_sites.fract_transf_matrix[1][2] 0.006398 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TO9 A 1 401 401 TO9 RXX . C 3 HOH A 1 501 252 HOH HOH . C 3 HOH A 2 502 378 HOH HOH . C 3 HOH A 3 503 376 HOH HOH . C 3 HOH A 4 504 366 HOH HOH . C 3 HOH A 5 505 352 HOH HOH . C 3 HOH A 6 506 316 HOH HOH . C 3 HOH A 7 507 155 HOH HOH . C 3 HOH A 8 508 273 HOH HOH . C 3 HOH A 9 509 201 HOH HOH . C 3 HOH A 10 510 74 HOH HOH . C 3 HOH A 11 511 360 HOH HOH . C 3 HOH A 12 512 73 HOH HOH . C 3 HOH A 13 513 330 HOH HOH . C 3 HOH A 14 514 81 HOH HOH . C 3 HOH A 15 515 450 HOH HOH . C 3 HOH A 16 516 304 HOH HOH . C 3 HOH A 17 517 106 HOH HOH . C 3 HOH A 18 518 78 HOH HOH . C 3 HOH A 19 519 29 HOH HOH . C 3 HOH A 20 520 113 HOH HOH . C 3 HOH A 21 521 274 HOH HOH . C 3 HOH A 22 522 147 HOH HOH . C 3 HOH A 23 523 132 HOH HOH . C 3 HOH A 24 524 198 HOH HOH . C 3 HOH A 25 525 12 HOH HOH . C 3 HOH A 26 526 433 HOH HOH . C 3 HOH A 27 527 25 HOH HOH . C 3 HOH A 28 528 95 HOH HOH . C 3 HOH A 29 529 138 HOH HOH . C 3 HOH A 30 530 260 HOH HOH . C 3 HOH A 31 531 169 HOH HOH . C 3 HOH A 32 532 43 HOH HOH . C 3 HOH A 33 533 13 HOH HOH . C 3 HOH A 34 534 37 HOH HOH . C 3 HOH A 35 535 16 HOH HOH . C 3 HOH A 36 536 289 HOH HOH . C 3 HOH A 37 537 231 HOH HOH . C 3 HOH A 38 538 129 HOH HOH . C 3 HOH A 39 539 337 HOH HOH . C 3 HOH A 40 540 334 HOH HOH . C 3 HOH A 41 541 83 HOH HOH . C 3 HOH A 42 542 115 HOH HOH . C 3 HOH A 43 543 305 HOH HOH . C 3 HOH A 44 544 151 HOH HOH . C 3 HOH A 45 545 232 HOH HOH . C 3 HOH A 46 546 444 HOH HOH . C 3 HOH A 47 547 35 HOH HOH . C 3 HOH A 48 548 80 HOH HOH . C 3 HOH A 49 549 39 HOH HOH . C 3 HOH A 50 550 100 HOH HOH . C 3 HOH A 51 551 1 HOH HOH . C 3 HOH A 52 552 26 HOH HOH . C 3 HOH A 53 553 439 HOH HOH . C 3 HOH A 54 554 56 HOH HOH . C 3 HOH A 55 555 443 HOH HOH . C 3 HOH A 56 556 332 HOH HOH . C 3 HOH A 57 557 44 HOH HOH . C 3 HOH A 58 558 276 HOH HOH . C 3 HOH A 59 559 99 HOH HOH . C 3 HOH A 60 560 387 HOH HOH . C 3 HOH A 61 561 181 HOH HOH . C 3 HOH A 62 562 250 HOH HOH . C 3 HOH A 63 563 24 HOH HOH . C 3 HOH A 64 564 91 HOH HOH . C 3 HOH A 65 565 15 HOH HOH . C 3 HOH A 66 566 251 HOH HOH . C 3 HOH A 67 567 50 HOH HOH . C 3 HOH A 68 568 21 HOH HOH . C 3 HOH A 69 569 41 HOH HOH . C 3 HOH A 70 570 146 HOH HOH . C 3 HOH A 71 571 22 HOH HOH . C 3 HOH A 72 572 230 HOH HOH . C 3 HOH A 73 573 261 HOH HOH . C 3 HOH A 74 574 4 HOH HOH . C 3 HOH A 75 575 52 HOH HOH . C 3 HOH A 76 576 6 HOH HOH . C 3 HOH A 77 577 348 HOH HOH . C 3 HOH A 78 578 143 HOH HOH . C 3 HOH A 79 579 249 HOH HOH . C 3 HOH A 80 580 187 HOH HOH . C 3 HOH A 81 581 114 HOH HOH . C 3 HOH A 82 582 10 HOH HOH . C 3 HOH A 83 583 142 HOH HOH . C 3 HOH A 84 584 66 HOH HOH . C 3 HOH A 85 585 101 HOH HOH . C 3 HOH A 86 586 180 HOH HOH . C 3 HOH A 87 587 20 HOH HOH . C 3 HOH A 88 588 55 HOH HOH . C 3 HOH A 89 589 38 HOH HOH . C 3 HOH A 90 590 288 HOH HOH . C 3 HOH A 91 591 363 HOH HOH . C 3 HOH A 92 592 98 HOH HOH . C 3 HOH A 93 593 328 HOH HOH . C 3 HOH A 94 594 49 HOH HOH . C 3 HOH A 95 595 85 HOH HOH . C 3 HOH A 96 596 23 HOH HOH . C 3 HOH A 97 597 301 HOH HOH . C 3 HOH A 98 598 8 HOH HOH . C 3 HOH A 99 599 62 HOH HOH . C 3 HOH A 100 600 243 HOH HOH . C 3 HOH A 101 601 103 HOH HOH . C 3 HOH A 102 602 40 HOH HOH . C 3 HOH A 103 603 290 HOH HOH . C 3 HOH A 104 604 340 HOH HOH . C 3 HOH A 105 605 17 HOH HOH . C 3 HOH A 106 606 33 HOH HOH . C 3 HOH A 107 607 5 HOH HOH . C 3 HOH A 108 608 53 HOH HOH . C 3 HOH A 109 609 469 HOH HOH . C 3 HOH A 110 610 14 HOH HOH . C 3 HOH A 111 611 109 HOH HOH . C 3 HOH A 112 612 104 HOH HOH . C 3 HOH A 113 613 18 HOH HOH . C 3 HOH A 114 614 139 HOH HOH . C 3 HOH A 115 615 280 HOH HOH . C 3 HOH A 116 616 374 HOH HOH . C 3 HOH A 117 617 255 HOH HOH . C 3 HOH A 118 618 124 HOH HOH . C 3 HOH A 119 619 237 HOH HOH . C 3 HOH A 120 620 128 HOH HOH . C 3 HOH A 121 621 70 HOH HOH . C 3 HOH A 122 622 267 HOH HOH . C 3 HOH A 123 623 165 HOH HOH . C 3 HOH A 124 624 272 HOH HOH . C 3 HOH A 125 625 32 HOH HOH . C 3 HOH A 126 626 11 HOH HOH . C 3 HOH A 127 627 421 HOH HOH . C 3 HOH A 128 628 65 HOH HOH . C 3 HOH A 129 629 265 HOH HOH . C 3 HOH A 130 630 293 HOH HOH . C 3 HOH A 131 631 87 HOH HOH . C 3 HOH A 132 632 79 HOH HOH . C 3 HOH A 133 633 102 HOH HOH . C 3 HOH A 134 634 93 HOH HOH . C 3 HOH A 135 635 42 HOH HOH . C 3 HOH A 136 636 351 HOH HOH . C 3 HOH A 137 637 300 HOH HOH . C 3 HOH A 138 638 137 HOH HOH . C 3 HOH A 139 639 69 HOH HOH . C 3 HOH A 140 640 61 HOH HOH . C 3 HOH A 141 641 111 HOH HOH . C 3 HOH A 142 642 19 HOH HOH . C 3 HOH A 143 643 193 HOH HOH . C 3 HOH A 144 644 94 HOH HOH . C 3 HOH A 145 645 7 HOH HOH . C 3 HOH A 146 646 31 HOH HOH . C 3 HOH A 147 647 254 HOH HOH . C 3 HOH A 148 648 82 HOH HOH . C 3 HOH A 149 649 285 HOH HOH . C 3 HOH A 150 650 382 HOH HOH . C 3 HOH A 151 651 47 HOH HOH . C 3 HOH A 152 652 72 HOH HOH . C 3 HOH A 153 653 286 HOH HOH . C 3 HOH A 154 654 338 HOH HOH . C 3 HOH A 155 655 97 HOH HOH . C 3 HOH A 156 656 48 HOH HOH . C 3 HOH A 157 657 294 HOH HOH . C 3 HOH A 158 658 372 HOH HOH . C 3 HOH A 159 659 3 HOH HOH . C 3 HOH A 160 660 67 HOH HOH . C 3 HOH A 161 661 470 HOH HOH . C 3 HOH A 162 662 130 HOH HOH . C 3 HOH A 163 663 84 HOH HOH . C 3 HOH A 164 664 299 HOH HOH . C 3 HOH A 165 665 191 HOH HOH . C 3 HOH A 166 666 291 HOH HOH . C 3 HOH A 167 667 247 HOH HOH . C 3 HOH A 168 668 222 HOH HOH . C 3 HOH A 169 669 307 HOH HOH . C 3 HOH A 170 670 264 HOH HOH . C 3 HOH A 171 671 342 HOH HOH . C 3 HOH A 172 672 76 HOH HOH . C 3 HOH A 173 673 271 HOH HOH . C 3 HOH A 174 674 306 HOH HOH . C 3 HOH A 175 675 183 HOH HOH . C 3 HOH A 176 676 223 HOH HOH . C 3 HOH A 177 677 105 HOH HOH . C 3 HOH A 178 678 152 HOH HOH . C 3 HOH A 179 679 281 HOH HOH . C 3 HOH A 180 680 134 HOH HOH . C 3 HOH A 181 681 188 HOH HOH . C 3 HOH A 182 682 465 HOH HOH . C 3 HOH A 183 683 329 HOH HOH . C 3 HOH A 184 684 364 HOH HOH . C 3 HOH A 185 685 279 HOH HOH . C 3 HOH A 186 686 27 HOH HOH . C 3 HOH A 187 687 248 HOH HOH . C 3 HOH A 188 688 277 HOH HOH . C 3 HOH A 189 689 336 HOH HOH . C 3 HOH A 190 690 331 HOH HOH . C 3 HOH A 191 691 292 HOH HOH . C 3 HOH A 192 692 57 HOH HOH . C 3 HOH A 193 693 9 HOH HOH . C 3 HOH A 194 694 434 HOH HOH . C 3 HOH A 195 695 269 HOH HOH . C 3 HOH A 196 696 296 HOH HOH . C 3 HOH A 197 697 451 HOH HOH . C 3 HOH A 198 698 259 HOH HOH . C 3 HOH A 199 699 287 HOH HOH . C 3 HOH A 200 700 233 HOH HOH . C 3 HOH A 201 701 315 HOH HOH . C 3 HOH A 202 702 266 HOH HOH . C 3 HOH A 203 703 46 HOH HOH . C 3 HOH A 204 704 295 HOH HOH . C 3 HOH A 205 705 107 HOH HOH . C 3 HOH A 206 706 186 HOH HOH . C 3 HOH A 207 707 311 HOH HOH . C 3 HOH A 208 708 284 HOH HOH . C 3 HOH A 209 709 361 HOH HOH . C 3 HOH A 210 710 238 HOH HOH . C 3 HOH A 211 711 58 HOH HOH . C 3 HOH A 212 712 122 HOH HOH . C 3 HOH A 213 713 427 HOH HOH . C 3 HOH A 214 714 239 HOH HOH . C 3 HOH A 215 715 317 HOH HOH . C 3 HOH A 216 716 234 HOH HOH . C 3 HOH A 217 717 302 HOH HOH . C 3 HOH A 218 718 333 HOH HOH . C 3 HOH A 219 719 235 HOH HOH . C 3 HOH A 220 720 194 HOH HOH . C 3 HOH A 221 721 268 HOH HOH . C 3 HOH A 222 722 282 HOH HOH . C 3 HOH A 223 723 310 HOH HOH . C 3 HOH A 224 724 400 HOH HOH . C 3 HOH A 225 725 362 HOH HOH . C 3 HOH A 226 726 335 HOH HOH . C 3 HOH A 227 727 324 HOH HOH . C 3 HOH A 228 728 344 HOH HOH . C 3 HOH A 229 729 323 HOH HOH . C 3 HOH A 230 730 278 HOH HOH . C 3 HOH A 231 731 369 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 TO9 . . . B 2 49.991 -8.816 -20.809 1 77.56 ? O3 TO9 401 A 1 HETATM 2 C C2 TO9 . . . B 2 49.983 -7.659 -21.276 1 72.55 ? C2 TO9 401 A 1 HETATM 3 O O2 TO9 . . . B 2 50.961 -6.901 -21.194 1 77.38 ? O2 TO9 401 A 1 HETATM 4 C C1 TO9 . . . B 2 48.742 -7.182 -21.957 1 70.77 ? C1 TO9 401 A 1 HETATM 5 O O1 TO9 . . . B 2 48.904 -6.119 -22.906 1 67.33 ? O1 TO9 401 A 1 HETATM 6 C C3 TO9 . . . B 2 47.728 -6.657 -21.01 1 63.59 ? C3 TO9 401 A 1 HETATM 7 C C4 TO9 . . . B 2 46.885 -7.593 -20.206 1 59.27 ? C4 TO9 401 A 1 HETATM 8 C C9 TO9 . . . B 2 45.752 -8.148 -20.706 1 59.03 ? C9 TO9 401 A 1 HETATM 9 C C8 TO9 . . . B 2 44.864 -8.95 -20.032 1 69.03 ? C8 TO9 401 A 1 HETATM 10 C C7 TO9 . . . B 2 45.182 -9.223 -18.742 1 64.65 ? C7 TO9 401 A 1 HETATM 11 O O5 TO9 . . . B 2 44.404 -9.998 -17.975 1 76.11 ? O5 TO9 401 A 1 HETATM 12 C C6 TO9 . . . B 2 46.398 -8.66 -18.164 1 61.87 ? C6 TO9 401 A 1 HETATM 13 O O4 TO9 . . . B 2 46.701 -8.937 -16.868 1 63.85 ? O4 TO9 401 A 1 HETATM 14 C C5 TO9 . . . B 2 47.206 -7.853 -18.926 1 56.94 ? C5 TO9 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #