data_8J4L # _model_server_result.job_id vbNDoHf6xCfrK0KwsGTksQ _model_server_result.datetime_utc '2025-03-05 04:09:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8J4L # _exptl.entry_id 8J4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 101.13 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1H-1,2,3-triazole-5-thiol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J4L _cell.length_a 39.928 _cell.length_b 50.13 _cell.length_c 76.208 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 D O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'C2 H3 N3 S' _chem_comp.formula_weight 101.13 _chem_comp.id EBJ _chem_comp.mon_nstd_flag . _chem_comp.name 1H-1,2,3-triazole-5-thiol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C6 EBJ sing 83 n y N5 N4 EBJ doub 84 n y C6 C2 EBJ doub 85 n y N4 N3 EBJ sing 86 n y C2 N3 EBJ sing 87 n y C2 S1 EBJ sing 88 n n C6 H1 EBJ sing 89 n n S1 H2 EBJ sing 90 n n N3 H3 EBJ sing 91 n n # _atom_sites.entry_id 8J4L _atom_sites.fract_transf_matrix[1][1] 0.025045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 201 HEM HEM . C 3 EBJ A 1 202 202 EBJ EBJ . D 4 HOH A 1 301 133 HOH HOH . D 4 HOH A 2 302 215 HOH HOH . D 4 HOH A 3 303 89 HOH HOH . D 4 HOH A 4 304 114 HOH HOH . D 4 HOH A 5 305 8 HOH HOH . D 4 HOH A 6 306 26 HOH HOH . D 4 HOH A 7 307 125 HOH HOH . D 4 HOH A 8 308 77 HOH HOH . D 4 HOH A 9 309 210 HOH HOH . D 4 HOH A 10 310 56 HOH HOH . D 4 HOH A 11 311 186 HOH HOH . D 4 HOH A 12 312 192 HOH HOH . D 4 HOH A 13 313 98 HOH HOH . D 4 HOH A 14 314 150 HOH HOH . D 4 HOH A 15 315 198 HOH HOH . D 4 HOH A 16 316 106 HOH HOH . D 4 HOH A 17 317 33 HOH HOH . D 4 HOH A 18 318 184 HOH HOH . D 4 HOH A 19 319 188 HOH HOH . D 4 HOH A 20 320 28 HOH HOH . D 4 HOH A 21 321 60 HOH HOH . D 4 HOH A 22 322 10 HOH HOH . D 4 HOH A 23 323 220 HOH HOH . D 4 HOH A 24 324 136 HOH HOH . D 4 HOH A 25 325 65 HOH HOH . D 4 HOH A 26 326 180 HOH HOH . D 4 HOH A 27 327 36 HOH HOH . D 4 HOH A 28 328 147 HOH HOH . D 4 HOH A 29 329 11 HOH HOH . D 4 HOH A 30 330 174 HOH HOH . D 4 HOH A 31 331 85 HOH HOH . D 4 HOH A 32 332 165 HOH HOH . D 4 HOH A 33 333 196 HOH HOH . D 4 HOH A 34 334 229 HOH HOH . D 4 HOH A 35 335 63 HOH HOH . D 4 HOH A 36 336 47 HOH HOH . D 4 HOH A 37 337 69 HOH HOH . D 4 HOH A 38 338 18 HOH HOH . D 4 HOH A 39 339 109 HOH HOH . D 4 HOH A 40 340 119 HOH HOH . D 4 HOH A 41 341 35 HOH HOH . D 4 HOH A 42 342 4 HOH HOH . D 4 HOH A 43 343 202 HOH HOH . D 4 HOH A 44 344 124 HOH HOH . D 4 HOH A 45 345 76 HOH HOH . D 4 HOH A 46 346 120 HOH HOH . D 4 HOH A 47 347 92 HOH HOH . D 4 HOH A 48 348 22 HOH HOH . D 4 HOH A 49 349 27 HOH HOH . D 4 HOH A 50 350 83 HOH HOH . D 4 HOH A 51 351 145 HOH HOH . D 4 HOH A 52 352 16 HOH HOH . D 4 HOH A 53 353 6 HOH HOH . D 4 HOH A 54 354 44 HOH HOH . D 4 HOH A 55 355 31 HOH HOH . D 4 HOH A 56 356 7 HOH HOH . D 4 HOH A 57 357 173 HOH HOH . D 4 HOH A 58 358 38 HOH HOH . D 4 HOH A 59 359 219 HOH HOH . D 4 HOH A 60 360 1 HOH HOH . D 4 HOH A 61 361 32 HOH HOH . D 4 HOH A 62 362 62 HOH HOH . D 4 HOH A 63 363 132 HOH HOH . D 4 HOH A 64 364 113 HOH HOH . D 4 HOH A 65 365 104 HOH HOH . D 4 HOH A 66 366 129 HOH HOH . D 4 HOH A 67 367 175 HOH HOH . D 4 HOH A 68 368 71 HOH HOH . D 4 HOH A 69 369 12 HOH HOH . D 4 HOH A 70 370 178 HOH HOH . D 4 HOH A 71 371 123 HOH HOH . D 4 HOH A 72 372 212 HOH HOH . D 4 HOH A 73 373 96 HOH HOH . D 4 HOH A 74 374 41 HOH HOH . D 4 HOH A 75 375 121 HOH HOH . D 4 HOH A 76 376 191 HOH HOH . D 4 HOH A 77 377 70 HOH HOH . D 4 HOH A 78 378 142 HOH HOH . D 4 HOH A 79 379 43 HOH HOH . D 4 HOH A 80 380 93 HOH HOH . D 4 HOH A 81 381 42 HOH HOH . D 4 HOH A 82 382 108 HOH HOH . D 4 HOH A 83 383 20 HOH HOH . D 4 HOH A 84 384 19 HOH HOH . D 4 HOH A 85 385 17 HOH HOH . D 4 HOH A 86 386 61 HOH HOH . D 4 HOH A 87 387 37 HOH HOH . D 4 HOH A 88 388 13 HOH HOH . D 4 HOH A 89 389 99 HOH HOH . D 4 HOH A 90 390 159 HOH HOH . D 4 HOH A 91 391 195 HOH HOH . D 4 HOH A 92 392 45 HOH HOH . D 4 HOH A 93 393 9 HOH HOH . D 4 HOH A 94 394 72 HOH HOH . D 4 HOH A 95 395 176 HOH HOH . D 4 HOH A 96 396 59 HOH HOH . D 4 HOH A 97 397 15 HOH HOH . D 4 HOH A 98 398 116 HOH HOH . D 4 HOH A 99 399 127 HOH HOH . D 4 HOH A 100 400 82 HOH HOH . D 4 HOH A 101 401 53 HOH HOH . D 4 HOH A 102 402 5 HOH HOH . D 4 HOH A 103 403 122 HOH HOH . D 4 HOH A 104 404 205 HOH HOH . D 4 HOH A 105 405 34 HOH HOH . D 4 HOH A 106 406 168 HOH HOH . D 4 HOH A 107 407 50 HOH HOH . D 4 HOH A 108 408 90 HOH HOH . D 4 HOH A 109 409 3 HOH HOH . D 4 HOH A 110 410 81 HOH HOH . D 4 HOH A 111 411 46 HOH HOH . D 4 HOH A 112 412 103 HOH HOH . D 4 HOH A 113 413 68 HOH HOH . D 4 HOH A 114 414 58 HOH HOH . D 4 HOH A 115 415 134 HOH HOH . D 4 HOH A 116 416 67 HOH HOH . D 4 HOH A 117 417 14 HOH HOH . D 4 HOH A 118 418 87 HOH HOH . D 4 HOH A 119 419 216 HOH HOH . D 4 HOH A 120 420 112 HOH HOH . D 4 HOH A 121 421 54 HOH HOH . D 4 HOH A 122 422 52 HOH HOH . D 4 HOH A 123 423 172 HOH HOH . D 4 HOH A 124 424 126 HOH HOH . D 4 HOH A 125 425 73 HOH HOH . D 4 HOH A 126 426 135 HOH HOH . D 4 HOH A 127 427 51 HOH HOH . D 4 HOH A 128 428 207 HOH HOH . D 4 HOH A 129 429 194 HOH HOH . D 4 HOH A 130 430 66 HOH HOH . D 4 HOH A 131 431 130 HOH HOH . D 4 HOH A 132 432 181 HOH HOH . D 4 HOH A 133 433 166 HOH HOH . D 4 HOH A 134 434 118 HOH HOH . D 4 HOH A 135 435 49 HOH HOH . D 4 HOH A 136 436 75 HOH HOH . D 4 HOH A 137 437 161 HOH HOH . D 4 HOH A 138 438 204 HOH HOH . D 4 HOH A 139 439 222 HOH HOH . D 4 HOH A 140 440 138 HOH HOH . D 4 HOH A 141 441 189 HOH HOH . D 4 HOH A 142 442 169 HOH HOH . D 4 HOH A 143 443 101 HOH HOH . D 4 HOH A 144 444 128 HOH HOH . D 4 HOH A 145 445 48 HOH HOH . D 4 HOH A 146 446 95 HOH HOH . D 4 HOH A 147 447 84 HOH HOH . D 4 HOH A 148 448 201 HOH HOH . D 4 HOH A 149 449 25 HOH HOH . D 4 HOH A 150 450 29 HOH HOH . D 4 HOH A 151 451 57 HOH HOH . D 4 HOH A 152 452 152 HOH HOH . D 4 HOH A 153 453 190 HOH HOH . D 4 HOH A 154 454 117 HOH HOH . D 4 HOH A 155 455 211 HOH HOH . D 4 HOH A 156 456 139 HOH HOH . D 4 HOH A 157 457 111 HOH HOH . D 4 HOH A 158 458 155 HOH HOH . D 4 HOH A 159 459 164 HOH HOH . D 4 HOH A 160 460 110 HOH HOH . D 4 HOH A 161 461 221 HOH HOH . D 4 HOH A 162 462 149 HOH HOH . D 4 HOH A 163 463 171 HOH HOH . D 4 HOH A 164 464 64 HOH HOH . D 4 HOH A 165 465 193 HOH HOH . D 4 HOH A 166 466 107 HOH HOH . D 4 HOH A 167 467 167 HOH HOH . D 4 HOH A 168 468 105 HOH HOH . D 4 HOH A 169 469 40 HOH HOH . D 4 HOH A 170 470 157 HOH HOH . D 4 HOH A 171 471 158 HOH HOH . D 4 HOH A 172 472 86 HOH HOH . D 4 HOH A 173 473 203 HOH HOH . D 4 HOH A 174 474 148 HOH HOH . D 4 HOH A 175 475 160 HOH HOH . D 4 HOH A 176 476 21 HOH HOH . D 4 HOH A 177 477 187 HOH HOH . D 4 HOH A 178 478 224 HOH HOH . D 4 HOH A 179 479 131 HOH HOH . D 4 HOH A 180 480 78 HOH HOH . D 4 HOH A 181 481 162 HOH HOH . D 4 HOH A 182 482 55 HOH HOH . D 4 HOH A 183 483 227 HOH HOH . D 4 HOH A 184 484 177 HOH HOH . D 4 HOH A 185 485 94 HOH HOH . D 4 HOH A 186 486 151 HOH HOH . D 4 HOH A 187 487 179 HOH HOH . D 4 HOH A 188 488 214 HOH HOH . D 4 HOH A 189 489 217 HOH HOH . D 4 HOH A 190 490 39 HOH HOH . D 4 HOH A 191 491 200 HOH HOH . D 4 HOH A 192 492 137 HOH HOH . D 4 HOH A 193 493 146 HOH HOH . D 4 HOH A 194 494 154 HOH HOH . D 4 HOH A 195 495 140 HOH HOH . D 4 HOH A 196 496 199 HOH HOH . D 4 HOH A 197 497 206 HOH HOH . D 4 HOH A 198 498 74 HOH HOH . D 4 HOH A 199 499 228 HOH HOH . D 4 HOH A 200 500 226 HOH HOH . D 4 HOH A 201 501 209 HOH HOH . D 4 HOH A 202 502 208 HOH HOH . D 4 HOH A 203 503 30 HOH HOH . D 4 HOH A 204 504 156 HOH HOH . D 4 HOH A 205 505 213 HOH HOH . D 4 HOH A 206 506 24 HOH HOH . D 4 HOH A 207 507 97 HOH HOH . D 4 HOH A 208 508 185 HOH HOH . D 4 HOH A 209 509 91 HOH HOH . D 4 HOH A 210 510 115 HOH HOH . D 4 HOH A 211 511 183 HOH HOH . D 4 HOH A 212 512 23 HOH HOH . D 4 HOH A 213 513 225 HOH HOH . D 4 HOH A 214 514 80 HOH HOH . D 4 HOH A 215 515 100 HOH HOH . D 4 HOH A 216 516 144 HOH HOH . D 4 HOH A 217 517 182 HOH HOH . D 4 HOH A 218 518 197 HOH HOH . D 4 HOH A 219 519 170 HOH HOH . D 4 HOH A 220 520 218 HOH HOH . D 4 HOH A 221 521 153 HOH HOH . D 4 HOH A 222 522 223 HOH HOH . D 4 HOH A 223 523 163 HOH HOH . D 4 HOH A 224 524 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 EBJ . . . C 3 -0.427 10.133 14.072 1 23.29 ? S1 EBJ 202 A 1 HETATM 2 C C2 EBJ . . . C 3 0.93 11.234 13.913 1 24.24 ? C2 EBJ 202 A 1 HETATM 3 N N3 EBJ . . . C 3 1.282 11.858 12.77 1 25.38 ? N3 EBJ 202 A 1 HETATM 4 N N4 EBJ . . . C 3 2.354 12.637 13.038 1 26.29 ? N4 EBJ 202 A 1 HETATM 5 N N5 EBJ . . . C 3 2.66 12.487 14.322 1 23.63 ? N5 EBJ 202 A 1 HETATM 6 C C6 EBJ . . . C 3 1.75 11.69 14.884 1 23.14 ? C6 EBJ 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #