data_8J4V # _model_server_result.job_id LKodEDYEJMKXPUw-GbDeWQ _model_server_result.datetime_utc '2024-11-22 18:32:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8J4V # _exptl.entry_id 8J4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.61 _cell.angle_gamma 90 _cell.entry_id 8J4V _cell.length_a 36.01 _cell.length_b 37.2 _cell.length_c 48.38 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 8J4V _atom_sites.fract_transf_matrix[1][1] 0.02777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN C 1 201 1 FMN FMN . C 3 PO4 C 1 202 1 PO4 PO4 . D 4 GOL C 1 203 2 GOL GOL . E 5 HOH C 1 301 104 HOH HOH . E 5 HOH C 2 302 131 HOH HOH . E 5 HOH C 3 303 78 HOH HOH . E 5 HOH C 4 304 62 HOH HOH . E 5 HOH C 5 305 9 HOH HOH . E 5 HOH C 6 306 110 HOH HOH . E 5 HOH C 7 307 145 HOH HOH . E 5 HOH C 8 308 54 HOH HOH . E 5 HOH C 9 309 36 HOH HOH . E 5 HOH C 10 310 152 HOH HOH . E 5 HOH C 11 311 16 HOH HOH . E 5 HOH C 12 312 23 HOH HOH . E 5 HOH C 13 313 8 HOH HOH . E 5 HOH C 14 314 103 HOH HOH . E 5 HOH C 15 315 7 HOH HOH . E 5 HOH C 16 316 40 HOH HOH . E 5 HOH C 17 317 29 HOH HOH . E 5 HOH C 18 318 66 HOH HOH . E 5 HOH C 19 319 124 HOH HOH . E 5 HOH C 20 320 125 HOH HOH . E 5 HOH C 21 321 12 HOH HOH . E 5 HOH C 22 322 2 HOH HOH . E 5 HOH C 23 323 4 HOH HOH . E 5 HOH C 24 324 84 HOH HOH . E 5 HOH C 25 325 47 HOH HOH . E 5 HOH C 26 326 18 HOH HOH . E 5 HOH C 27 327 1 HOH HOH . E 5 HOH C 28 328 86 HOH HOH . E 5 HOH C 29 329 72 HOH HOH . E 5 HOH C 30 330 5 HOH HOH . E 5 HOH C 31 331 11 HOH HOH . E 5 HOH C 32 332 13 HOH HOH . E 5 HOH C 33 333 115 HOH HOH . E 5 HOH C 34 334 45 HOH HOH . E 5 HOH C 35 335 123 HOH HOH . E 5 HOH C 36 336 60 HOH HOH . E 5 HOH C 37 337 51 HOH HOH . E 5 HOH C 38 338 24 HOH HOH . E 5 HOH C 39 339 27 HOH HOH . E 5 HOH C 40 340 31 HOH HOH . E 5 HOH C 41 341 96 HOH HOH . E 5 HOH C 42 342 6 HOH HOH . E 5 HOH C 43 343 100 HOH HOH . E 5 HOH C 44 344 128 HOH HOH . E 5 HOH C 45 345 14 HOH HOH . E 5 HOH C 46 346 10 HOH HOH . E 5 HOH C 47 347 93 HOH HOH . E 5 HOH C 48 348 15 HOH HOH . E 5 HOH C 49 349 63 HOH HOH . E 5 HOH C 50 350 70 HOH HOH . E 5 HOH C 51 351 3 HOH HOH . E 5 HOH C 52 352 48 HOH HOH . E 5 HOH C 53 353 118 HOH HOH . E 5 HOH C 54 354 30 HOH HOH . E 5 HOH C 55 355 19 HOH HOH . E 5 HOH C 56 356 50 HOH HOH . E 5 HOH C 57 357 22 HOH HOH . E 5 HOH C 58 358 20 HOH HOH . E 5 HOH C 59 359 99 HOH HOH . E 5 HOH C 60 360 53 HOH HOH . E 5 HOH C 61 361 76 HOH HOH . E 5 HOH C 62 362 17 HOH HOH . E 5 HOH C 63 363 35 HOH HOH . E 5 HOH C 64 364 58 HOH HOH . E 5 HOH C 65 365 97 HOH HOH . E 5 HOH C 66 366 122 HOH HOH . E 5 HOH C 67 367 57 HOH HOH . E 5 HOH C 68 368 55 HOH HOH . E 5 HOH C 69 369 56 HOH HOH . E 5 HOH C 70 370 42 HOH HOH . E 5 HOH C 71 371 37 HOH HOH . E 5 HOH C 72 372 65 HOH HOH . E 5 HOH C 73 373 21 HOH HOH . E 5 HOH C 74 374 139 HOH HOH . E 5 HOH C 75 375 94 HOH HOH . E 5 HOH C 76 376 127 HOH HOH . E 5 HOH C 77 377 28 HOH HOH . E 5 HOH C 78 378 52 HOH HOH . E 5 HOH C 79 379 79 HOH HOH . E 5 HOH C 80 380 38 HOH HOH . E 5 HOH C 81 381 141 HOH HOH . E 5 HOH C 82 382 102 HOH HOH . E 5 HOH C 83 383 90 HOH HOH . E 5 HOH C 84 384 25 HOH HOH . E 5 HOH C 85 385 154 HOH HOH . E 5 HOH C 86 386 61 HOH HOH . E 5 HOH C 87 387 77 HOH HOH . E 5 HOH C 88 388 26 HOH HOH . E 5 HOH C 89 389 82 HOH HOH . E 5 HOH C 90 390 59 HOH HOH . E 5 HOH C 91 391 46 HOH HOH . E 5 HOH C 92 392 73 HOH HOH . E 5 HOH C 93 393 95 HOH HOH . E 5 HOH C 94 394 32 HOH HOH . E 5 HOH C 95 395 92 HOH HOH . E 5 HOH C 96 396 119 HOH HOH . E 5 HOH C 97 397 33 HOH HOH . E 5 HOH C 98 398 85 HOH HOH . E 5 HOH C 99 399 133 HOH HOH . E 5 HOH C 100 400 80 HOH HOH . E 5 HOH C 101 401 137 HOH HOH . E 5 HOH C 102 402 136 HOH HOH . E 5 HOH C 103 403 117 HOH HOH . E 5 HOH C 104 404 88 HOH HOH . E 5 HOH C 105 405 87 HOH HOH . E 5 HOH C 106 406 34 HOH HOH . E 5 HOH C 107 407 83 HOH HOH . E 5 HOH C 108 408 68 HOH HOH . E 5 HOH C 109 409 39 HOH HOH . E 5 HOH C 110 410 67 HOH HOH . E 5 HOH C 111 411 98 HOH HOH . E 5 HOH C 112 412 71 HOH HOH . E 5 HOH C 113 413 111 HOH HOH . E 5 HOH C 114 414 75 HOH HOH . E 5 HOH C 115 415 91 HOH HOH . E 5 HOH C 116 416 43 HOH HOH . E 5 HOH C 117 417 135 HOH HOH . E 5 HOH C 118 418 44 HOH HOH . E 5 HOH C 119 419 64 HOH HOH . E 5 HOH C 120 420 74 HOH HOH . E 5 HOH C 121 421 41 HOH HOH . E 5 HOH C 122 422 130 HOH HOH . E 5 HOH C 123 423 69 HOH HOH . E 5 HOH C 124 424 126 HOH HOH . E 5 HOH C 125 425 49 HOH HOH . E 5 HOH C 126 426 89 HOH HOH . E 5 HOH C 127 427 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -11.264 32.194 11.154 1 5.62 ? N1 FMN 201 C 1 HETATM 2 C C2 FMN . . . B 2 -11.082 31.859 9.84 1 5.57 ? C2 FMN 201 C 1 HETATM 3 O O2 FMN . . . B 2 -10.718 30.719 9.536 1 5.99 ? O2 FMN 201 C 1 HETATM 4 N N3 FMN . . . B 2 -11.302 32.8 8.864 1 5.92 ? N3 FMN 201 C 1 HETATM 5 C C4 FMN . . . B 2 -11.738 34.072 9.15 1 6.44 ? C4 FMN 201 C 1 HETATM 6 O O4 FMN . . . B 2 -11.935 34.846 8.204 1 7.25 ? O4 FMN 201 C 1 HETATM 7 C C4A FMN . . . B 2 -11.943 34.415 10.484 1 6.12 ? C4A FMN 201 C 1 HETATM 8 N N5 FMN . . . B 2 -12.371 35.681 10.843 1 7.2 ? N5 FMN 201 C 1 HETATM 9 C C5A FMN . . . B 2 -12.569 35.979 12.175 1 7.27 ? C5A FMN 201 C 1 HETATM 10 C C6 FMN . . . B 2 -13.019 37.254 12.527 1 8.81 ? C6 FMN 201 C 1 HETATM 11 C C7 FMN . . . B 2 -13.211 37.597 13.863 1 9.93 ? C7 FMN 201 C 1 HETATM 12 C C7M FMN . . . B 2 -13.677 38.976 14.239 1 11.94 ? C7M FMN 201 C 1 HETATM 13 C C8 FMN . . . B 2 -12.958 36.647 14.847 1 11.17 ? C8 FMN 201 C 1 HETATM 14 C C8M FMN . . . B 2 -13.157 36.993 16.296 1 14.33 ? C8M FMN 201 C 1 HETATM 15 C C9 FMN . . . B 2 -12.511 35.372 14.493 1 8.61 ? C9 FMN 201 C 1 HETATM 16 C C9A FMN . . . B 2 -12.317 35.024 13.16 1 6.85 ? C9A FMN 201 C 1 HETATM 17 N N10 FMN . . . B 2 -11.861 33.762 12.799 1 6.36 ? N10 FMN 201 C 1 HETATM 18 C C10 FMN . . . B 2 -11.687 33.458 11.47 1 6.06 ? C10 FMN 201 C 1 HETATM 19 C C1' FMN . . . B 2 -11.561 32.716 13.835 1 7.02 ? C1' FMN 201 C 1 HETATM 20 C C2' FMN . . . B 2 -10.185 32.947 14.494 1 6.57 ? C2' FMN 201 C 1 HETATM 21 O O2' FMN . . . B 2 -9.138 32.873 13.544 1 6.62 ? O2' FMN 201 C 1 HETATM 22 C C3' FMN . . . B 2 -9.954 31.858 15.54 1 6.97 ? C3' FMN 201 C 1 HETATM 23 O O3' FMN . . . B 2 -10.903 32.01 16.586 1 8.71 ? O3' FMN 201 C 1 HETATM 24 C C4' FMN . . . B 2 -8.529 31.84 16.086 1 6.46 ? C4' FMN 201 C 1 HETATM 25 O O4' FMN . . . B 2 -8.39 30.661 16.846 1 7.97 ? O4' FMN 201 C 1 HETATM 26 C C5' FMN . . . B 2 -8.241 33.059 16.947 1 7 ? C5' FMN 201 C 1 HETATM 27 O O5' FMN . . . B 2 -6.892 32.991 17.391 1 6.76 ? O5' FMN 201 C 1 HETATM 28 P P FMN . . . B 2 -6.412 33.844 18.66 1 6.51 ? P FMN 201 C 1 HETATM 29 O O1P FMN . . . B 2 -7.257 33.434 19.84 1 7.41 ? O1P FMN 201 C 1 HETATM 30 O O2P FMN . . . B 2 -4.975 33.427 18.847 1 6.61 ? O2P FMN 201 C 1 HETATM 31 O O3P FMN . . . B 2 -6.576 35.313 18.353 1 7.2 ? O3P FMN 201 C 1 # _model_server_stats.io_time_ms 115 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #