data_8J4V # _model_server_result.job_id lLE9XuzBSOaWgI3WQIcAeg _model_server_result.datetime_utc '2024-11-22 18:41:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8J4V # _exptl.entry_id 8J4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.61 _cell.angle_gamma 90 _cell.entry_id 8J4V _cell.length_a 36.01 _cell.length_b 37.2 _cell.length_c 48.38 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 8J4V _atom_sites.fract_transf_matrix[1][1] 0.02777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN C 1 201 1 FMN FMN . C 3 PO4 C 1 202 1 PO4 PO4 . D 4 GOL C 1 203 2 GOL GOL . E 5 HOH C 1 301 104 HOH HOH . E 5 HOH C 2 302 131 HOH HOH . E 5 HOH C 3 303 78 HOH HOH . E 5 HOH C 4 304 62 HOH HOH . E 5 HOH C 5 305 9 HOH HOH . E 5 HOH C 6 306 110 HOH HOH . E 5 HOH C 7 307 145 HOH HOH . E 5 HOH C 8 308 54 HOH HOH . E 5 HOH C 9 309 36 HOH HOH . E 5 HOH C 10 310 152 HOH HOH . E 5 HOH C 11 311 16 HOH HOH . E 5 HOH C 12 312 23 HOH HOH . E 5 HOH C 13 313 8 HOH HOH . E 5 HOH C 14 314 103 HOH HOH . E 5 HOH C 15 315 7 HOH HOH . E 5 HOH C 16 316 40 HOH HOH . E 5 HOH C 17 317 29 HOH HOH . E 5 HOH C 18 318 66 HOH HOH . E 5 HOH C 19 319 124 HOH HOH . E 5 HOH C 20 320 125 HOH HOH . E 5 HOH C 21 321 12 HOH HOH . E 5 HOH C 22 322 2 HOH HOH . E 5 HOH C 23 323 4 HOH HOH . E 5 HOH C 24 324 84 HOH HOH . E 5 HOH C 25 325 47 HOH HOH . E 5 HOH C 26 326 18 HOH HOH . E 5 HOH C 27 327 1 HOH HOH . E 5 HOH C 28 328 86 HOH HOH . E 5 HOH C 29 329 72 HOH HOH . E 5 HOH C 30 330 5 HOH HOH . E 5 HOH C 31 331 11 HOH HOH . E 5 HOH C 32 332 13 HOH HOH . E 5 HOH C 33 333 115 HOH HOH . E 5 HOH C 34 334 45 HOH HOH . E 5 HOH C 35 335 123 HOH HOH . E 5 HOH C 36 336 60 HOH HOH . E 5 HOH C 37 337 51 HOH HOH . E 5 HOH C 38 338 24 HOH HOH . E 5 HOH C 39 339 27 HOH HOH . E 5 HOH C 40 340 31 HOH HOH . E 5 HOH C 41 341 96 HOH HOH . E 5 HOH C 42 342 6 HOH HOH . E 5 HOH C 43 343 100 HOH HOH . E 5 HOH C 44 344 128 HOH HOH . E 5 HOH C 45 345 14 HOH HOH . E 5 HOH C 46 346 10 HOH HOH . E 5 HOH C 47 347 93 HOH HOH . E 5 HOH C 48 348 15 HOH HOH . E 5 HOH C 49 349 63 HOH HOH . E 5 HOH C 50 350 70 HOH HOH . E 5 HOH C 51 351 3 HOH HOH . E 5 HOH C 52 352 48 HOH HOH . E 5 HOH C 53 353 118 HOH HOH . E 5 HOH C 54 354 30 HOH HOH . E 5 HOH C 55 355 19 HOH HOH . E 5 HOH C 56 356 50 HOH HOH . E 5 HOH C 57 357 22 HOH HOH . E 5 HOH C 58 358 20 HOH HOH . E 5 HOH C 59 359 99 HOH HOH . E 5 HOH C 60 360 53 HOH HOH . E 5 HOH C 61 361 76 HOH HOH . E 5 HOH C 62 362 17 HOH HOH . E 5 HOH C 63 363 35 HOH HOH . E 5 HOH C 64 364 58 HOH HOH . E 5 HOH C 65 365 97 HOH HOH . E 5 HOH C 66 366 122 HOH HOH . E 5 HOH C 67 367 57 HOH HOH . E 5 HOH C 68 368 55 HOH HOH . E 5 HOH C 69 369 56 HOH HOH . E 5 HOH C 70 370 42 HOH HOH . E 5 HOH C 71 371 37 HOH HOH . E 5 HOH C 72 372 65 HOH HOH . E 5 HOH C 73 373 21 HOH HOH . E 5 HOH C 74 374 139 HOH HOH . E 5 HOH C 75 375 94 HOH HOH . E 5 HOH C 76 376 127 HOH HOH . E 5 HOH C 77 377 28 HOH HOH . E 5 HOH C 78 378 52 HOH HOH . E 5 HOH C 79 379 79 HOH HOH . E 5 HOH C 80 380 38 HOH HOH . E 5 HOH C 81 381 141 HOH HOH . E 5 HOH C 82 382 102 HOH HOH . E 5 HOH C 83 383 90 HOH HOH . E 5 HOH C 84 384 25 HOH HOH . E 5 HOH C 85 385 154 HOH HOH . E 5 HOH C 86 386 61 HOH HOH . E 5 HOH C 87 387 77 HOH HOH . E 5 HOH C 88 388 26 HOH HOH . E 5 HOH C 89 389 82 HOH HOH . E 5 HOH C 90 390 59 HOH HOH . E 5 HOH C 91 391 46 HOH HOH . E 5 HOH C 92 392 73 HOH HOH . E 5 HOH C 93 393 95 HOH HOH . E 5 HOH C 94 394 32 HOH HOH . E 5 HOH C 95 395 92 HOH HOH . E 5 HOH C 96 396 119 HOH HOH . E 5 HOH C 97 397 33 HOH HOH . E 5 HOH C 98 398 85 HOH HOH . E 5 HOH C 99 399 133 HOH HOH . E 5 HOH C 100 400 80 HOH HOH . E 5 HOH C 101 401 137 HOH HOH . E 5 HOH C 102 402 136 HOH HOH . E 5 HOH C 103 403 117 HOH HOH . E 5 HOH C 104 404 88 HOH HOH . E 5 HOH C 105 405 87 HOH HOH . E 5 HOH C 106 406 34 HOH HOH . E 5 HOH C 107 407 83 HOH HOH . E 5 HOH C 108 408 68 HOH HOH . E 5 HOH C 109 409 39 HOH HOH . E 5 HOH C 110 410 67 HOH HOH . E 5 HOH C 111 411 98 HOH HOH . E 5 HOH C 112 412 71 HOH HOH . E 5 HOH C 113 413 111 HOH HOH . E 5 HOH C 114 414 75 HOH HOH . E 5 HOH C 115 415 91 HOH HOH . E 5 HOH C 116 416 43 HOH HOH . E 5 HOH C 117 417 135 HOH HOH . E 5 HOH C 118 418 44 HOH HOH . E 5 HOH C 119 419 64 HOH HOH . E 5 HOH C 120 420 74 HOH HOH . E 5 HOH C 121 421 41 HOH HOH . E 5 HOH C 122 422 130 HOH HOH . E 5 HOH C 123 423 69 HOH HOH . E 5 HOH C 124 424 126 HOH HOH . E 5 HOH C 125 425 49 HOH HOH . E 5 HOH C 126 426 89 HOH HOH . E 5 HOH C 127 427 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -4.259 18.655 8.261 1 21.75 ? C1 GOL 203 C 1 HETATM 2 O O1 GOL . . . D 4 -5.569 19.09 8.46 1 24.17 ? O1 GOL 203 C 1 HETATM 3 C C2 GOL . . . D 4 -3.628 19.538 7.147 1 18.39 ? C2 GOL 203 C 1 HETATM 4 O O2 GOL . . . D 4 -4.4 19.567 5.99 1 18.7 ? O2 GOL 203 C 1 HETATM 5 C C3 GOL . . . D 4 -3.442 20.948 7.762 1 14.3 ? C3 GOL 203 C 1 HETATM 6 O O3 GOL . . . D 4 -2.507 21.641 6.966 1 10.68 ? O3 GOL 203 C 1 # _model_server_stats.io_time_ms 92 _model_server_stats.parse_time_ms 172 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #