data_8J4W # _model_server_result.job_id OSwW-JbWk5_ANklh0sp-4w _model_server_result.datetime_utc '2024-11-22 13:24:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8J4W # _exptl.entry_id 8J4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.53 _cell.angle_gamma 90 _cell.entry_id 8J4W _cell.length_a 35.737 _cell.length_b 36.84 _cell.length_c 48.371 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 8J4W _atom_sites.fract_transf_matrix[1][1] 0.027982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011039 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN C 1 201 1 FMN FMN . C 3 SO3 C 1 202 201 SO3 SO3 . D 4 PEO C 1 203 401 PEO PEO . E 5 PER C 1 204 1 PER PER . F 6 CL C 1 205 1 CL CL . G 7 HOH C 1 301 176 HOH HOH . G 7 HOH C 2 302 99 HOH HOH . G 7 HOH C 3 303 85 HOH HOH . G 7 HOH C 4 304 192 HOH HOH . G 7 HOH C 5 305 93 HOH HOH . G 7 HOH C 6 306 194 HOH HOH . G 7 HOH C 7 307 17 HOH HOH . G 7 HOH C 8 308 86 HOH HOH . G 7 HOH C 9 309 6 HOH HOH . G 7 HOH C 10 310 89 HOH HOH . G 7 HOH C 11 311 81 HOH HOH . G 7 HOH C 12 312 75 HOH HOH . G 7 HOH C 13 313 39 HOH HOH . G 7 HOH C 14 314 71 HOH HOH . G 7 HOH C 15 315 28 HOH HOH . G 7 HOH C 16 316 78 HOH HOH . G 7 HOH C 17 317 157 HOH HOH . G 7 HOH C 18 318 145 HOH HOH . G 7 HOH C 19 319 53 HOH HOH . G 7 HOH C 20 320 9 HOH HOH . G 7 HOH C 21 321 48 HOH HOH . G 7 HOH C 22 322 27 HOH HOH . G 7 HOH C 23 323 38 HOH HOH . G 7 HOH C 24 324 44 HOH HOH . G 7 HOH C 25 325 49 HOH HOH . G 7 HOH C 26 326 4 HOH HOH . G 7 HOH C 27 327 14 HOH HOH . G 7 HOH C 28 328 51 HOH HOH . G 7 HOH C 29 329 77 HOH HOH . G 7 HOH C 30 330 34 HOH HOH . G 7 HOH C 31 331 22 HOH HOH . G 7 HOH C 32 332 16 HOH HOH . G 7 HOH C 33 333 158 HOH HOH . G 7 HOH C 34 334 20 HOH HOH . G 7 HOH C 35 335 193 HOH HOH . G 7 HOH C 36 336 149 HOH HOH . G 7 HOH C 37 337 64 HOH HOH . G 7 HOH C 38 338 188 HOH HOH . G 7 HOH C 39 339 45 HOH HOH . G 7 HOH C 40 340 11 HOH HOH . G 7 HOH C 41 341 21 HOH HOH . G 7 HOH C 42 342 52 HOH HOH . G 7 HOH C 43 343 3 HOH HOH . G 7 HOH C 44 344 113 HOH HOH . G 7 HOH C 45 345 29 HOH HOH . G 7 HOH C 46 346 91 HOH HOH . G 7 HOH C 47 347 5 HOH HOH . G 7 HOH C 48 348 43 HOH HOH . G 7 HOH C 49 349 7 HOH HOH . G 7 HOH C 50 350 123 HOH HOH . G 7 HOH C 51 351 57 HOH HOH . G 7 HOH C 52 352 63 HOH HOH . G 7 HOH C 53 353 124 HOH HOH . G 7 HOH C 54 354 23 HOH HOH . G 7 HOH C 55 355 26 HOH HOH . G 7 HOH C 56 356 2 HOH HOH . G 7 HOH C 57 357 42 HOH HOH . G 7 HOH C 58 358 84 HOH HOH . G 7 HOH C 59 359 166 HOH HOH . G 7 HOH C 60 360 47 HOH HOH . G 7 HOH C 61 361 41 HOH HOH . G 7 HOH C 62 362 59 HOH HOH . G 7 HOH C 63 363 12 HOH HOH . G 7 HOH C 64 364 76 HOH HOH . G 7 HOH C 65 365 54 HOH HOH . G 7 HOH C 66 366 140 HOH HOH . G 7 HOH C 67 367 110 HOH HOH . G 7 HOH C 68 368 55 HOH HOH . G 7 HOH C 69 369 15 HOH HOH . G 7 HOH C 70 370 132 HOH HOH . G 7 HOH C 71 371 19 HOH HOH . G 7 HOH C 72 372 50 HOH HOH . G 7 HOH C 73 373 56 HOH HOH . G 7 HOH C 74 374 36 HOH HOH . G 7 HOH C 75 375 146 HOH HOH . G 7 HOH C 76 376 40 HOH HOH . G 7 HOH C 77 377 31 HOH HOH . G 7 HOH C 78 378 156 HOH HOH . G 7 HOH C 79 379 82 HOH HOH . G 7 HOH C 80 380 18 HOH HOH . G 7 HOH C 81 381 142 HOH HOH . G 7 HOH C 82 382 32 HOH HOH . G 7 HOH C 83 383 80 HOH HOH . G 7 HOH C 84 384 115 HOH HOH . G 7 HOH C 85 385 33 HOH HOH . G 7 HOH C 86 386 25 HOH HOH . G 7 HOH C 87 387 61 HOH HOH . G 7 HOH C 88 388 1 HOH HOH . G 7 HOH C 89 389 73 HOH HOH . G 7 HOH C 90 390 143 HOH HOH . G 7 HOH C 91 391 13 HOH HOH . G 7 HOH C 92 392 24 HOH HOH . G 7 HOH C 93 393 119 HOH HOH . G 7 HOH C 94 394 90 HOH HOH . G 7 HOH C 95 395 155 HOH HOH . G 7 HOH C 96 396 95 HOH HOH . G 7 HOH C 97 397 62 HOH HOH . G 7 HOH C 98 398 180 HOH HOH . G 7 HOH C 99 399 79 HOH HOH . G 7 HOH C 100 400 35 HOH HOH . G 7 HOH C 101 401 97 HOH HOH . G 7 HOH C 102 402 161 HOH HOH . G 7 HOH C 103 403 108 HOH HOH . G 7 HOH C 104 404 67 HOH HOH . G 7 HOH C 105 405 37 HOH HOH . G 7 HOH C 106 406 111 HOH HOH . G 7 HOH C 107 407 69 HOH HOH . G 7 HOH C 108 408 162 HOH HOH . G 7 HOH C 109 409 72 HOH HOH . G 7 HOH C 110 410 167 HOH HOH . G 7 HOH C 111 411 96 HOH HOH . G 7 HOH C 112 412 112 HOH HOH . G 7 HOH C 113 413 68 HOH HOH . G 7 HOH C 114 414 70 HOH HOH . G 7 HOH C 115 415 150 HOH HOH . G 7 HOH C 116 416 92 HOH HOH . G 7 HOH C 117 417 144 HOH HOH . G 7 HOH C 118 418 118 HOH HOH . G 7 HOH C 119 419 191 HOH HOH . G 7 HOH C 120 420 88 HOH HOH . G 7 HOH C 121 421 175 HOH HOH . G 7 HOH C 122 422 107 HOH HOH . G 7 HOH C 123 423 121 HOH HOH . G 7 HOH C 124 424 183 HOH HOH . G 7 HOH C 125 425 174 HOH HOH . G 7 HOH C 126 426 187 HOH HOH . G 7 HOH C 127 427 163 HOH HOH . G 7 HOH C 128 428 103 HOH HOH . G 7 HOH C 129 429 87 HOH HOH . G 7 HOH C 130 430 102 HOH HOH . G 7 HOH C 131 431 169 HOH HOH . G 7 HOH C 132 432 136 HOH HOH . G 7 HOH C 133 433 133 HOH HOH . G 7 HOH C 134 434 106 HOH HOH . G 7 HOH C 135 435 134 HOH HOH . G 7 HOH C 136 436 98 HOH HOH . G 7 HOH C 137 437 189 HOH HOH . G 7 HOH C 138 438 83 HOH HOH . G 7 HOH C 139 439 65 HOH HOH . G 7 HOH C 140 440 171 HOH HOH . G 7 HOH C 141 441 125 HOH HOH . G 7 HOH C 142 442 104 HOH HOH . G 7 HOH C 143 443 66 HOH HOH . G 7 HOH C 144 444 74 HOH HOH . G 7 HOH C 145 445 58 HOH HOH . G 7 HOH C 146 446 30 HOH HOH . G 7 HOH C 147 447 60 HOH HOH . G 7 HOH C 148 448 105 HOH HOH . G 7 HOH C 149 449 139 HOH HOH . G 7 HOH C 150 450 130 HOH HOH . G 7 HOH C 151 451 116 HOH HOH . G 7 HOH C 152 452 159 HOH HOH . G 7 HOH C 153 453 135 HOH HOH . G 7 HOH C 154 454 120 HOH HOH . G 7 HOH C 155 455 114 HOH HOH . G 7 HOH C 156 456 131 HOH HOH . G 7 HOH C 157 457 126 HOH HOH . G 7 HOH C 158 458 148 HOH HOH . G 7 HOH C 159 459 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -11.404 32.015 11.174 1 7.3 ? N1 FMN 201 C 1 HETATM 2 C C2 FMN . . . B 2 -11.234 31.715 9.849 1 7.37 ? C2 FMN 201 C 1 HETATM 3 O O2 FMN . . . B 2 -10.898 30.584 9.515 1 7.64 ? O2 FMN 201 C 1 HETATM 4 N N3 FMN . . . B 2 -11.456 32.674 8.895 1 7.34 ? N3 FMN 201 C 1 HETATM 5 C C4 FMN . . . B 2 -11.866 33.945 9.228 1 7.2 ? C4 FMN 201 C 1 HETATM 6 O O4 FMN . . . B 2 -12.061 34.752 8.304 1 8.72 ? O4 FMN 201 C 1 HETATM 7 C C4A FMN . . . B 2 -12.037 34.26 10.582 1 6.79 ? C4A FMN 201 C 1 HETATM 8 N N5 FMN . . . B 2 -12.45 35.52 10.981 1 7.26 ? N5 FMN 201 C 1 HETATM 9 C C5A FMN . . . B 2 -12.615 35.789 12.324 1 7.34 ? C5A FMN 201 C 1 HETATM 10 C C6 FMN . . . B 2 -13.04 37.06 12.724 1 8.57 ? C6 FMN 201 C 1 HETATM 11 C C7 FMN . . . B 2 -13.201 37.36 14.072 1 9.49 ? C7 FMN 201 C 1 HETATM 12 C C7M FMN . . . B 2 -13.641 38.737 14.482 1 11.65 ? C7M FMN 201 C 1 HETATM 13 C C8 FMN . . . B 2 -12.965 36.376 15.028 1 10.26 ? C8 FMN 201 C 1 HETATM 14 C C8M FMN . . . B 2 -13.143 36.66 16.49 1 12.19 ? C8M FMN 201 C 1 HETATM 15 C C9 FMN . . . B 2 -12.553 35.106 14.629 1 9.04 ? C9 FMN 201 C 1 HETATM 16 C C9A FMN . . . B 2 -12.384 34.803 13.281 1 7.58 ? C9A FMN 201 C 1 HETATM 17 N N10 FMN . . . B 2 -11.957 33.539 12.885 1 6.95 ? N10 FMN 201 C 1 HETATM 18 C C10 FMN . . . B 2 -11.801 33.277 11.542 1 6.71 ? C10 FMN 201 C 1 HETATM 19 C C1' FMN . . . B 2 -11.648 32.453 13.875 1 7.8 ? C1' FMN 201 C 1 HETATM 20 C C2' FMN . . . B 2 -10.273 32.691 14.527 1 7.59 ? C2' FMN 201 C 1 HETATM 21 O O2' FMN . . . B 2 -9.217 32.655 13.589 1 7.9 ? O2' FMN 201 C 1 HETATM 22 C C3' FMN . . . B 2 -10.035 31.604 15.568 1 7.64 ? C3' FMN 201 C 1 HETATM 23 O O3' FMN . . . B 2 -10.966 31.743 16.63 1 9.55 ? O3' FMN 201 C 1 HETATM 24 C C4' FMN . . . B 2 -8.599 31.585 16.104 1 7.77 ? C4' FMN 201 C 1 HETATM 25 O O4' FMN . . . B 2 -8.428 30.379 16.805 1 8.38 ? O4' FMN 201 C 1 HETATM 26 C C5' FMN . . . B 2 -8.296 32.748 17.037 1 8.06 ? C5' FMN 201 C 1 HETATM 27 O O5' FMN . . . B 2 -6.934 32.659 17.423 1 7.49 ? O5' FMN 201 C 1 HETATM 28 P P FMN . . . B 2 -6.451 33.457 18.72 1 7.45 ? P FMN 201 C 1 HETATM 29 O O1P FMN . . . B 2 -7.275 32.996 19.905 1 8.53 ? O1P FMN 201 C 1 HETATM 30 O O2P FMN . . . B 2 -5.025 33.06 18.882 1 7.01 ? O2P FMN 201 C 1 HETATM 31 O O3P FMN . . . B 2 -6.625 34.928 18.48 1 8.11 ? O3P FMN 201 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #