data_8J4X # _model_server_result.job_id dPqz3inD4qQjG2y7kNHxEw _model_server_result.datetime_utc '2024-10-16 08:49:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1301}' # _entry.id 8J4X # _exptl.entry_id 8J4X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J4X _cell.length_a 160.5 _cell.length_b 160.5 _cell.length_c 312.08 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G,I,J,K,O,P,Q,R,CA,EA,GA,KA 1 1 B,L,M,N,FA 2 1,2 D,F,H,S,T,U,Y,Z,AA,BA,DA,HA,JA,LA 3 1 E,V,W,X,IA 4 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -160.5 -160.5 0 3 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N ? 3 S N N ? 3 T N N ? 3 V N N ? 3 W N N ? 3 Z N N ? 3 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 72 A ASP 72 1_555 J MN MN . A MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 A OE2 GLU 103 A GLU 103 1_555 I MN MN . A MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc3 A OE1 GLU 103 A GLU 103 1_555 J MN MN . A MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc4 A ND1 HIS 106 A HIS 106 1_555 J MN MN . A MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc5 A OE1 GLU 163 A GLU 163 1_555 I MN MN . A MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc6 A OE2 GLU 197 A GLU 197 1_555 I MN MN . A MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc7 A OE2 GLU 197 A GLU 197 1_555 J MN MN . A MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc8 A ND1 HIS 200 A HIS 200 1_555 I MN MN . A MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc9 B OD2 ASP 72 B ASP 72 1_555 L MN MN . B MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc10 B OE1 GLU 103 B GLU 103 1_555 L MN MN . B MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc11 B OE2 GLU 103 B GLU 103 1_555 M MN MN . B MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc12 B ND1 HIS 106 B HIS 106 1_555 L MN MN . B MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc13 B OE1 GLU 163 B GLU 163 1_555 M MN MN . B MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc14 B OE2 GLU 197 B GLU 197 1_555 L MN MN . B MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc15 B OE2 GLU 197 B GLU 197 1_555 M MN MN . B MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc16 B ND1 HIS 200 B HIS 200 1_555 M MN MN . B MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc17 C OD1 ASP 72 C ASP 72 1_555 P MN MN . C MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc18 C OE2 GLU 103 C GLU 103 1_555 O MN MN . C MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc19 C ND1 HIS 106 C HIS 106 1_555 P MN MN . C MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc20 C OE1 GLU 163 C GLU 163 1_555 O MN MN . C MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc21 C OE1 GLU 197 C GLU 197 1_555 O MN MN . C MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc22 C OE2 GLU 197 C GLU 197 1_555 O MN MN . C MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc23 C ND1 HIS 200 C HIS 200 1_555 O MN MN . C MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc24 D OD1 ASP 72 D ASP 72 1_555 S MN MN . D MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc25 D OE2 GLU 103 D GLU 103 1_555 T MN MN . D MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc26 D ND1 HIS 106 D HIS 106 1_555 S MN MN . D MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc27 D OE2 GLU 197 D GLU 197 1_555 S MN MN . D MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc28 D OE1 GLU 197 D GLU 197 1_555 T MN MN . D MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc29 D OE2 GLU 197 D GLU 197 1_555 T MN MN . D MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc30 D ND1 HIS 200 D HIS 200 1_555 T MN MN . D MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc31 E OD2 ASP 72 E ASP 72 1_555 W MN MN . E MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc32 E OE2 GLU 103 E GLU 103 1_555 V MN MN . E MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc33 E OE2 GLU 163 E GLU 163 1_555 V MN MN . E MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc34 E OE2 GLU 197 E GLU 197 1_555 V MN MN . E MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc35 E OE2 GLU 197 E GLU 197 1_555 W MN MN . E MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc36 E ND1 HIS 200 E HIS 200 1_555 V MN MN . E MN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc37 F OD1 ASP 72 F ASP 72 1_555 Z MN MN . F MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc38 F OE2 GLU 103 F GLU 103 1_555 AA MN MN . F MN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc39 F ND1 HIS 106 F HIS 106 1_555 Z MN MN . F MN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc40 F OE2 GLU 197 F GLU 197 1_555 AA MN MN . F MN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc41 F ND1 HIS 200 F HIS 200 1_555 AA MN MN . F MN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8J4X _atom_sites.fract_transf_matrix[1][1] 0.006231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 MN A 1 1301 1301 MN MN . J 3 MN A 1 1302 1302 MN MN . K 4 OH A 1 1303 1303 OH OH . L 3 MN B 1 1301 1301 MN MN . M 3 MN B 1 1302 1302 MN MN . N 4 OH B 1 1303 1303 OH OH . O 3 MN C 1 1301 1301 MN MN . P 3 MN C 1 1302 1302 MN MN . Q 5 GOL C 1 1303 1303 GOL GOL . R 4 OH C 1 1304 1304 OH OH . S 3 MN D 1 1301 1301 MN MN . T 3 MN D 1 1302 1302 MN MN . U 4 OH D 1 1303 1303 OH OH . V 3 MN E 1 1301 1301 MN MN . W 3 MN E 1 1302 1302 MN MN . X 4 OH E 1 1303 1303 OH OH . Y 5 GOL F 1 1301 1301 GOL GOL . Z 3 MN F 1 1302 1302 MN MN . AA 3 MN F 1 1303 1303 MN MN . BA 4 OH F 1 1304 1304 OH OH . CA 6 FMN G 1 201 153 FMN FMN . DA 6 FMN I 1 201 152 FMN FMN . EA 7 HOH A 1 1401 26 HOH HOH . EA 7 HOH A 2 1402 14 HOH HOH . EA 7 HOH A 3 1403 31 HOH HOH . EA 7 HOH A 4 1404 6 HOH HOH . EA 7 HOH A 5 1405 12 HOH HOH . EA 7 HOH A 6 1406 5 HOH HOH . EA 7 HOH A 7 1407 8 HOH HOH . FA 7 HOH B 1 1401 33 HOH HOH . FA 7 HOH B 2 1402 32 HOH HOH . FA 7 HOH B 3 1403 15 HOH HOH . FA 7 HOH B 4 1404 9 HOH HOH . GA 7 HOH C 1 1401 27 HOH HOH . GA 7 HOH C 2 1402 34 HOH HOH . GA 7 HOH C 3 1403 21 HOH HOH . GA 7 HOH C 4 1404 16 HOH HOH . HA 7 HOH D 1 1401 20 HOH HOH . HA 7 HOH D 2 1402 24 HOH HOH . HA 7 HOH D 3 1403 4 HOH HOH . HA 7 HOH D 4 1404 23 HOH HOH . HA 7 HOH D 5 1405 18 HOH HOH . HA 7 HOH D 6 1406 28 HOH HOH . HA 7 HOH D 7 1407 2 HOH HOH . IA 7 HOH E 1 1401 29 HOH HOH . IA 7 HOH E 2 1402 17 HOH HOH . JA 7 HOH F 1 1401 1 HOH HOH . JA 7 HOH F 2 1402 30 HOH HOH . JA 7 HOH F 3 1403 7 HOH HOH . JA 7 HOH F 4 1404 35 HOH HOH . JA 7 HOH F 5 1405 11 HOH HOH . KA 7 HOH G 1 301 10 HOH HOH . LA 7 HOH I 1 301 13 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id S _atom_site.label_entity_id 3 _atom_site.Cartn_x -22.584 _atom_site.Cartn_y -41.407 _atom_site.Cartn_z -73.285 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 95.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 1301 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #