data_8J5O # _model_server_result.job_id 57CG7CvaG9yJx6uch_seAw _model_server_result.datetime_utc '2025-09-09 00:36:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"TC","auth_seq_id":1004}' # _entry.id 8J5O # _exptl.entry_id 8J5O _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 55.845 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J5O _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 36-meric _pdbx_struct_assembly.oligomeric_count 36 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 14 _struct_asym.id TC _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 M SG CYS 118 C CYS 118 1_555 OB CAB HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? covale ? covale2 M SG CYS 121 C CYS 121 1_555 OB CAC HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? covale ? covale3 M SG CYS 171 C CYS 171 1_555 PB CAB HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? covale ? covale4 M SG CYS 174 C CYS 174 1_555 PB CAC HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? covale ? covale5 M SG CYS 240 C CYS 240 1_555 QB CAB HEM . C HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? covale ? covale6 M SG CYS 243 C CYS 243 1_555 QB CAC HEM . C HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? covale ? covale7 M SG CYS 293 C CYS 293 1_555 RB CAB HEM . C HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? covale ? covale8 M SG CYS 296 C CYS 296 1_555 RB CAC HEM . C HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc1 M SD MET 106 C MET 106 1_555 OB FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc2 M NE2 HIS 122 C HIS 122 1_555 OB FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc3 M SD MET 145 C MET 145 1_555 PB FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 M NE2 HIS 175 C HIS 175 1_555 PB FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc5 M SD MET 229 C MET 229 1_555 QB FE HEM . C HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc6 M NE2 HIS 244 C HIS 244 1_555 QB FE HEM . C HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc7 M SD MET 263 C MET 263 1_555 RB FE HEM . C HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc8 M NE2 HIS 297 C HIS 297 1_555 RB FE HEM . C HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc9 V NE2 HIS 229 L HIS 229 1_555 TC FE FE . L FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc10 TC FE FE . L FE 1004 1_555 W NE2 HIS 208 M HIS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc11 TC FE FE . L FE 1004 1_555 W OE2 GLU 223 M GLU 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8J5O _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code KA 9 BCL 0 1 101 101 BCL BCL . LA 9 BCL 0 1 102 103 BCL BCL . MA 10 KGD 0 1 103 111 KGD KGD . NA 10 KGD 0 1 104 5 KGD KGD . OA 9 BCL 1 1 101 102 BCL BCL . PA 10 KGD 1 1 102 111 KGD KGD . QA 10 KGD 1 1 103 111 KGD KGD . RA 9 BCL 2 1 101 101 BCL BCL . SA 9 BCL 2 1 102 103 BCL BCL . TA 10 KGD 2 1 103 1 KGD KGD . UA 9 BCL 3 1 101 102 BCL BCL . VA 9 BCL 4 1 101 101 BCL BCL . WA 9 BCL 4 1 102 103 BCL BCL . XA 10 KGD 4 1 103 2 KGD KGD . YA 9 BCL 5 1 101 102 BCL BCL . ZA 10 KGD 5 1 102 111 KGD KGD . AB 9 BCL 6 1 101 101 BCL BCL . BB 9 BCL 6 1 102 103 BCL BCL . CB 10 KGD 6 1 103 3 KGD KGD . DB 9 BCL 7 1 101 102 BCL BCL . EB 10 KGD 7 1 102 111 KGD KGD . FB 9 BCL 8 1 101 101 BCL BCL . GB 9 BCL 8 1 102 103 BCL BCL . HB 10 KGD 8 1 103 4 KGD KGD . IB 9 BCL 9 1 101 102 BCL BCL . JB 9 BCL A 1 101 102 BCL BCL . KB 10 KGD A 1 102 111 KGD KGD . LB 9 BCL B 1 101 101 BCL BCL . MB 9 BCL B 1 102 103 BCL BCL . NB 10 KGD B 1 103 6 KGD KGD . OB 11 HEM C 1 501 501 HEM HEM . PB 11 HEM C 1 502 502 HEM HEM . QB 11 HEM C 1 503 503 HEM HEM . RB 11 HEM C 1 504 504 HEM HEM . SB 10 KGD C 1 505 111 KGD KGD . TB 10 KGD C 1 506 15 KGD KGD . UB 12 PGV C 1 507 2 PGV PGV . VB 9 BCL D 1 101 102 BCL BCL . WB 10 KGD D 1 102 111 KGD KGD . XB 10 KGD D 1 103 111 KGD KGD . YB 9 BCL E 1 101 101 BCL BCL . ZB 9 BCL E 1 102 103 BCL BCL . AC 10 KGD E 1 103 7 KGD KGD . BC 9 BCL F 1 101 102 BCL BCL . CC 9 BCL F 1 102 101 BCL BCL . DC 9 BCL G 1 101 103 BCL BCL . EC 10 KGD G 1 102 8 KGD KGD . FC 9 BCL H 1 101 102 BCL BCL . GC 10 KGD H 1 102 111 KGD KGD . HC 9 BCL I 1 101 101 BCL BCL . IC 9 BCL I 1 102 103 BCL BCL . JC 10 KGD I 1 103 9 KGD KGD . KC 9 BCL J 1 101 102 BCL BCL . LC 10 KGD J 1 102 111 KGD KGD . MC 10 KGD J 1 103 111 KGD KGD . NC 9 BCL K 1 101 101 BCL BCL . OC 9 BCL K 1 102 103 BCL BCL . PC 10 KGD K 1 103 10 KGD KGD . QC 9 BCL L 1 1001 1001 BCL BCL . RC 9 BCL L 1 1002 1002 BCL BCL . SC 13 BPH L 1 1003 1012 BPH BPH . TC 14 FE L 1 1004 1015 FE FE . UC 15 MQE L 1 1005 1004 MQE MQE . VC 13 BPH L 1 1006 1013 BPH BPH . WC 12 PGV L 1 1007 1 PGV PGV . XC 12 PGV L 1 1008 3 PGV PGV . YC 12 PGV L 1 1009 6 PGV PGV . ZC 15 MQE M 1 701 1014 MQE MQE . AD 9 BCL M 1 702 1003 BCL BCL . BD 13 BPH M 1 703 1011 BPH BPH . CD 15 MQE M 1 704 1014 MQE MQE . DD 9 BCL N 1 101 102 BCL BCL . ED 9 BCL O 1 101 101 BCL BCL . FD 9 BCL O 1 102 103 BCL BCL . GD 10 KGD O 1 103 11 KGD KGD . HD 9 BCL P 1 101 102 BCL BCL . ID 10 KGD P 1 102 111 KGD KGD . JD 9 BCL Q 1 101 101 BCL BCL . KD 9 BCL Q 1 102 103 BCL BCL . LD 10 KGD Q 1 103 111 KGD KGD . MD 9 BCL R 1 101 102 BCL BCL . ND 10 KGD R 1 102 111 KGD KGD . OD 9 BCL S 1 101 101 BCL BCL . PD 9 BCL S 1 102 103 BCL BCL . QD 10 KGD S 1 103 12 KGD KGD . RD 10 KGD S 1 104 13 KGD KGD . SD 9 BCL T 1 101 102 BCL BCL . TD 9 BCL U 1 101 101 BCL BCL . UD 9 BCL U 1 102 103 BCL BCL . VD 10 KGD U 1 103 14 KGD KGD . WD 9 BCL V 1 101 102 BCL BCL . XD 9 BCL W 1 101 101 BCL BCL . YD 9 BCL W 1 102 103 BCL BCL . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id TC _atom_site.label_entity_id 14 _atom_site.Cartn_x 133.163 _atom_site.Cartn_y 130.28 _atom_site.Cartn_z 116.091 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 1004 _atom_site.auth_asym_id L _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #