data_8J5S # _model_server_result.job_id 3ea8a28zvLkCfrDoHhUI-g _model_server_result.datetime_utc '2024-11-22 13:32:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j5s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":705}' # _entry.id 8J5S # _exptl.entry_id 8J5S _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 351.64 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J5S _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J5S _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OG SER 48 D SER 48 1_555 I MG MG . D MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 D OE1 GLN 96 D GLN 96 1_555 I MG MG . D MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc3 D SG CYS 286 D CYS 286 1_555 J FE3 SF4 . D SF4 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc4 D SG CYS 292 D CYS 292 1_555 J FE4 SF4 . D SF4 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc5 D SG CYS 299 D CYS 299 1_555 J FE1 SF4 . D SF4 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc6 D SG CYS 317 D CYS 317 1_555 J FE2 SF4 . D SF4 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc7 D OE1 GLN 445 D GLN 445 1_555 G MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc8 F O1G ANP . D ANP 701 1_555 G MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? metalc ? metalc9 F O2G ANP . D ANP 701 1_555 G MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc10 H O2G ANP . D ANP 703 1_555 I MG MG . D MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 338 n n FE1 S3 SF4 sing 339 n n FE1 S4 SF4 sing 340 n n FE2 S1 SF4 sing 341 n n FE2 S3 SF4 sing 342 n n FE2 S4 SF4 sing 343 n n FE3 S1 SF4 sing 344 n n FE3 S2 SF4 sing 345 n n FE3 S4 SF4 sing 346 n n FE4 S1 SF4 sing 347 n n FE4 S2 SF4 sing 348 n n FE4 S3 SF4 sing 349 n n # _atom_sites.entry_id 8J5S _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ANP D 1 701 701 ANP ANP . G 7 MG D 1 702 702 MG MG . H 6 ANP D 1 703 801 ANP ANP . I 7 MG D 1 704 802 MG MG . J 8 SF4 D 1 705 901 SF4 SF4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . J 8 112.074 108.086 77.999 1 38.43 ? FE1 SF4 705 D 1 HETATM 2 FE FE2 SF4 . . . J 8 114.702 107.613 77.452 1 38.43 ? FE2 SF4 705 D 1 HETATM 3 FE FE3 SF4 . . . J 8 113.946 108.438 79.941 1 38.43 ? FE3 SF4 705 D 1 HETATM 4 FE FE4 SF4 . . . J 8 113.823 110.151 77.811 1 38.43 ? FE4 SF4 705 D 1 HETATM 5 S S1 SF4 . . . J 8 115.705 109.218 78.713 1 38.43 ? S1 SF4 705 D 1 HETATM 6 S S2 SF4 . . . J 8 112.236 109.852 79.419 1 38.43 ? S2 SF4 705 D 1 HETATM 7 S S3 SF4 . . . J 8 113.222 108.737 76.161 1 38.43 ? S3 SF4 705 D 1 HETATM 8 S S4 SF4 . . . J 8 113.394 106.474 78.939 1 38.43 ? S4 SF4 705 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #