data_8J5T # _model_server_result.job_id TqpSwcNNwtQICcdFZ6zY7g _model_server_result.datetime_utc '2024-11-26 18:37:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":703}' # _entry.id 8J5T # _exptl.entry_id 8J5T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J5T _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OG SER 48 D SER 48 1_555 H MG MG . D MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc2 D OE1 GLN 96 D GLN 96 1_555 H MG MG . D MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc3 D SG CYS 286 D CYS 286 1_555 I FE3 SF4 . D SF4 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc4 D SG CYS 292 D CYS 292 1_555 I FE1 SF4 . D SF4 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc5 D SG CYS 299 D CYS 299 1_555 I FE2 SF4 . D SF4 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc6 D SG CYS 317 D CYS 317 1_555 I FE4 SF4 . D SF4 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc7 D OG SER 401 D SER 401 1_555 F MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc8 D OE1 GLN 445 D GLN 445 1_555 F MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc9 E O3G ATP . D ATP 701 1_555 F MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc10 E O2B ATP . D ATP 701 1_555 F MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc11 G O1G ATP . D ATP 703 1_555 H MG MG . D MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc12 G O2B ATP . D ATP 703 1_555 H MG MG . D MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8J5T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ATP D 1 701 701 ATP ATP . F 6 MG D 1 702 702 MG MG . G 5 ATP D 1 703 801 ATP ATP . H 6 MG D 1 704 802 MG MG . I 7 SF4 D 1 705 901 SF4 SF4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 5 136.261 142.969 88.992 1 53.3 ? PG ATP 703 D 1 HETATM 2 O O1G ATP . . . G 5 135.462 143.615 90.096 1 53.3 ? O1G ATP 703 D 1 HETATM 3 O O2G ATP . . . G 5 136.296 141.464 89.029 1 53.3 ? O2G ATP 703 D 1 HETATM 4 O O3G ATP . . . G 5 136.001 143.554 87.631 1 53.3 ? O3G ATP 703 D 1 HETATM 5 P PB ATP . . . G 5 138.285 144.884 89.402 1 53.3 ? PB ATP 703 D 1 HETATM 6 O O1B ATP . . . G 5 138.794 145.312 88.052 1 53.3 ? O1B ATP 703 D 1 HETATM 7 O O2B ATP . . . G 5 137.215 145.686 90.085 1 53.3 ? O2B ATP 703 D 1 HETATM 8 O O3B ATP . . . G 5 137.792 143.366 89.259 1 53.3 ? O3B ATP 703 D 1 HETATM 9 P PA ATP . . . G 5 139.768 145.4 91.784 1 53.3 ? PA ATP 703 D 1 HETATM 10 O O1A ATP . . . G 5 140.129 146.841 91.563 1 53.3 ? O1A ATP 703 D 1 HETATM 11 O O2A ATP . . . G 5 138.612 145.024 92.672 1 53.3 ? O2A ATP 703 D 1 HETATM 12 O O3A ATP . . . G 5 139.574 144.708 90.347 1 53.3 ? O3A ATP 703 D 1 HETATM 13 O O5' ATP . . . G 5 141.091 144.666 92.313 1 53.3 ? O5' ATP 703 D 1 HETATM 14 C C5' ATP . . . G 5 142.207 144.542 91.437 1 53.3 ? C5' ATP 703 D 1 HETATM 15 C C4' ATP . . . G 5 143.319 143.79 92.143 1 53.3 ? C4' ATP 703 D 1 HETATM 16 O O4' ATP . . . G 5 143.465 144.327 93.451 1 53.3 ? O4' ATP 703 D 1 HETATM 17 C C3' ATP . . . G 5 142.974 142.325 92.306 1 53.3 ? C3' ATP 703 D 1 HETATM 18 O O3' ATP . . . G 5 144.167 141.568 92.118 1 53.3 ? O3' ATP 703 D 1 HETATM 19 C C2' ATP . . . G 5 142.546 142.188 93.744 1 53.3 ? C2' ATP 703 D 1 HETATM 20 O O2' ATP . . . G 5 142.899 140.912 94.275 1 53.3 ? O2' ATP 703 D 1 HETATM 21 C C1' ATP . . . G 5 143.342 143.285 94.408 1 53.3 ? C1' ATP 703 D 1 HETATM 22 N N9 ATP . . . G 5 142.631 143.811 95.579 1 53.3 ? N9 ATP 703 D 1 HETATM 23 C C8 ATP . . . G 5 141.417 144.381 95.592 1 53.3 ? C8 ATP 703 D 1 HETATM 24 N N7 ATP . . . G 5 141.079 144.753 96.849 1 53.3 ? N7 ATP 703 D 1 HETATM 25 C C5 ATP . . . G 5 142.1 144.411 97.651 1 53.3 ? C5 ATP 703 D 1 HETATM 26 C C6 ATP . . . G 5 142.404 144.511 99.088 1 53.3 ? C6 ATP 703 D 1 HETATM 27 N N6 ATP . . . G 5 141.516 145.071 99.938 1 53.3 ? N6 ATP 703 D 1 HETATM 28 N N1 ATP . . . G 5 143.589 144.029 99.517 1 53.3 ? N1 ATP 703 D 1 HETATM 29 C C2 ATP . . . G 5 144.477 143.473 98.676 1 53.3 ? C2 ATP 703 D 1 HETATM 30 N N3 ATP . . . G 5 144.268 143.347 97.358 1 53.3 ? N3 ATP 703 D 1 HETATM 31 C C4 ATP . . . G 5 143.119 143.789 96.806 1 53.3 ? C4 ATP 703 D 1 # _model_server_stats.io_time_ms 130 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 31 #