data_8J5W # _model_server_result.job_id RtRXY9obKH6pjS3Dgafv2Q _model_server_result.datetime_utc '2025-08-01 03:02:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 8J5W # _exptl.entry_id 8J5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 659.82 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-cyclopropyl-5-((4-methylpiperazin-1-yl)methyl)phenyl)-4^6-methyl-14-oxo-5-oxa-13-aza-1(3,6)-imidazo[1,2-b]pyridazina-4(1,3)-benzenacyclotetradecaphan-2-yne-4^5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8J5W _cell.length_a 51.677 _cell.length_b 51.677 _cell.length_c 229.152 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall 'P 31 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 31 1 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C39 H45 N7 O3' _chem_comp.formula_weight 659.82 _chem_comp.id A4U _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-cyclopropyl-5-((4-methylpiperazin-1-yl)methyl)phenyl)-4^6-methyl-14-oxo-5-oxa-13-aza-1(3,6)-imidazo[1,2-b]pyridazina-4(1,3)-benzenacyclotetradecaphan-2-yne-4^5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C42 C43 A4U doub 1 n y C42 C41 A4U sing 2 n y C43 C38 A4U sing 3 n y O49 C37 A4U doub 4 n n C41 N44 A4U doub 5 n y C41 N40 A4U sing 6 n y N44 C45 A4U sing 7 n y C38 C37 A4U sing 8 n n C38 N39 A4U doub 9 n y C37 N36 A4U sing 10 n n N40 N39 A4U sing 11 n y N40 C46 A4U sing 12 n y C45 C46 A4U doub 13 n y N36 C35 A4U sing 14 n n C46 C47 A4U sing 15 n n C35 C34 A4U sing 16 n n C34 C33 A4U sing 17 n n C47 C48 A4U trip 18 n n C48 C03 A4U sing 19 n n C33 C32 A4U sing 20 n n C32 C31 A4U sing 21 n n C03 C04 A4U doub 22 n y C03 C02 A4U sing 23 n y C04 C05 A4U sing 24 n y C01 C02 A4U sing 25 n n C31 C30 A4U sing 26 n n C02 C07 A4U doub 27 n y C29 C30 A4U sing 28 n n C29 O28 A4U sing 29 n n C05 O28 A4U sing 30 n n C05 C06 A4U doub 31 n y C07 C06 A4U sing 32 n y C07 C08 A4U sing 33 n n O27 C08 A4U doub 34 n n C08 N09 A4U sing 35 n n N09 C10 A4U sing 36 n n C26 C10 A4U doub 37 n y C26 C22 A4U sing 38 n y C10 C11 A4U sing 39 n y C23 C22 A4U sing 40 n n C23 C24 A4U sing 41 n n C23 C25 A4U sing 42 n n C22 C21 A4U doub 43 n y C11 C12 A4U doub 44 n y C24 C25 A4U sing 45 n n C21 C12 A4U sing 46 n y C12 C13 A4U sing 47 n n C20 N14 A4U sing 48 n n C20 C19 A4U sing 49 n n C13 N14 A4U sing 50 n n N14 C15 A4U sing 51 n n C19 N17 A4U sing 52 n n N17 C18 A4U sing 53 n n N17 C16 A4U sing 54 n n C15 C16 A4U sing 55 n n C13 H1 A4U sing 56 n n C13 H2 A4U sing 57 n n C15 H3 A4U sing 58 n n C15 H4 A4U sing 59 n n C20 H5 A4U sing 60 n n C20 H6 A4U sing 61 n n C21 H7 A4U sing 62 n n C24 H8 A4U sing 63 n n C24 H9 A4U sing 64 n n C26 H10 A4U sing 65 n n C01 H11 A4U sing 66 n n C01 H12 A4U sing 67 n n C01 H13 A4U sing 68 n n C04 H14 A4U sing 69 n n C06 H15 A4U sing 70 n n N09 H16 A4U sing 71 n n C11 H17 A4U sing 72 n n C16 H19 A4U sing 73 n n C16 H20 A4U sing 74 n n C18 H22 A4U sing 75 n n C18 H23 A4U sing 76 n n C18 H24 A4U sing 77 n n C19 H25 A4U sing 78 n n C19 H26 A4U sing 79 n n C23 H27 A4U sing 80 n n C25 H28 A4U sing 81 n n C25 H29 A4U sing 82 n n C29 H30 A4U sing 83 n n C29 H31 A4U sing 84 n n C30 H32 A4U sing 85 n n C30 H33 A4U sing 86 n n C31 H34 A4U sing 87 n n C31 H35 A4U sing 88 n n C32 H36 A4U sing 89 n n C32 H37 A4U sing 90 n n C33 H38 A4U sing 91 n n C33 H39 A4U sing 92 n n C34 H40 A4U sing 93 n n C34 H41 A4U sing 94 n n C35 H42 A4U sing 95 n n C35 H43 A4U sing 96 n n N36 H44 A4U sing 97 n n C42 H45 A4U sing 98 n n C43 H46 A4U sing 99 n n C45 H47 A4U sing 100 n n # _atom_sites.entry_id 8J5W _atom_sites.fract_transf_matrix[1][1] 0.019351 _atom_sites.fract_transf_matrix[1][2] 0.011172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004364 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id A4U _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 801 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id A4U _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A4U . . . B 2 -12.98 -1.941 23.497 1 104.55 ? C10 A4U 801 A 1 HETATM 2 C C13 A4U . . . B 2 -13.447 -1.268 27.464 1 80.36 ? C13 A4U 801 A 1 HETATM 3 C C15 A4U . . . B 2 -13.918 -1.955 29.513 1 80.96 ? C15 A4U 801 A 1 HETATM 4 C C20 A4U . . . B 2 -15.332 -2.439 27.649 1 84.51 ? C20 A4U 801 A 1 HETATM 5 C C21 A4U . . . B 2 -11.74 -2.876 26.139 1 103.88 ? C21 A4U 801 A 1 HETATM 6 C C22 A4U . . . B 2 -11.213 -3.432 24.815 1 102.27 ? C22 A4U 801 A 1 HETATM 7 C C24 A4U . . . B 2 -8.655 -3.891 24.809 1 94.2 ? C24 A4U 801 A 1 HETATM 8 C C26 A4U . . . B 2 -11.832 -2.952 23.497 1 99.54 ? C26 A4U 801 A 1 HETATM 9 C C01 A4U . . . B 2 -12.366 -2.303 18.107 1 92.2 ? C01 A4U 801 A 1 HETATM 10 C C02 A4U . . . B 2 -13.713 -1.63 18.409 1 93.66 ? C02 A4U 801 A 1 HETATM 11 C C03 A4U . . . B 2 -14.48 -1.027 17.241 1 89.18 ? C03 A4U 801 A 1 HETATM 12 C C04 A4U . . . B 2 -15.829 -0.344 17.46 1 88.33 ? C04 A4U 801 A 1 HETATM 13 C C05 A4U . . . B 2 -16.411 -0.25 18.863 1 90.51 ? C05 A4U 801 A 1 HETATM 14 C C06 A4U . . . B 2 -15.646 -0.847 20.04 1 94.94 ? C06 A4U 801 A 1 HETATM 15 C C07 A4U . . . B 2 -14.292 -1.531 19.817 1 97.32 ? C07 A4U 801 A 1 HETATM 16 C C08 A4U . . . B 2 -13.564 -2.124 21.029 1 105.76 ? C08 A4U 801 A 1 HETATM 17 N N09 A4U . . . B 2 -13.617 -1.448 22.291 1 107.47 ? N09 A4U 801 A 1 HETATM 18 C C11 A4U . . . B 2 -13.493 -1.4 24.815 1 105.33 ? C11 A4U 801 A 1 HETATM 19 C C12 A4U . . . B 2 -12.889 -1.86 26.136 1 101.92 ? C12 A4U 801 A 1 HETATM 20 N N14 A4U . . . B 2 -14.05 -2.155 28.139 1 83.59 ? N14 A4U 801 A 1 HETATM 21 C C16 A4U . . . B 2 -15.138 -1.361 30.219 1 77.76 ? C16 A4U 801 A 1 HETATM 22 N N17 A4U . . . B 2 -16.312 -1.989 29.805 1 77.72 1 N17 A4U 801 A 1 HETATM 23 C C18 A4U . . . B 2 -17.471 -1.459 30.559 1 70.31 ? C18 A4U 801 A 1 HETATM 24 C C19 A4U . . . B 2 -16.483 -1.808 28.441 1 79.74 ? C19 A4U 801 A 1 HETATM 25 C C23 A4U . . . B 2 -10.067 -4.452 24.804 1 95.79 ? C23 A4U 801 A 1 HETATM 26 C C25 A4U . . . B 2 -9.24 -4.478 23.532 1 91.87 ? C25 A4U 801 A 1 HETATM 27 O O27 A4U . . . B 2 -12.968 -3.176 20.909 1 108.93 ? O27 A4U 801 A 1 HETATM 28 O O28 A4U . . . B 2 -17.677 0.394 19.063 1 90.12 ? O28 A4U 801 A 1 HETATM 29 C C29 A4U . . . B 2 -18.746 -0.249 18.339 1 94.62 ? C29 A4U 801 A 1 HETATM 30 C C30 A4U . . . B 2 -19.642 0.796 17.61 1 153.67 ? C30 A4U 801 A 1 HETATM 31 C C31 A4U . . . B 2 -20.822 0.064 16.883 1 48.92 ? C31 A4U 801 A 1 HETATM 32 C C32 A4U . . . B 2 -20.57 -0.011 15.339 1 110.14 ? C32 A4U 801 A 1 HETATM 33 C C33 A4U . . . B 2 -19.608 -1.204 14.947 1 48.55 ? C33 A4U 801 A 1 HETATM 34 C C34 A4U . . . B 2 -20.108 -1.823 13.602 1 98.78 ? C34 A4U 801 A 1 HETATM 35 C C35 A4U . . . B 2 -19.345 -3.145 13.239 1 95.55 ? C35 A4U 801 A 1 HETATM 36 N N36 A4U . . . B 2 -17.986 -2.821 12.858 1 96.72 ? N36 A4U 801 A 1 HETATM 37 C C37 A4U . . . B 2 -17.302 -3.451 11.734 1 95.76 ? C37 A4U 801 A 1 HETATM 38 C C38 A4U . . . B 2 -15.855 -2.997 11.471 1 84.77 ? C38 A4U 801 A 1 HETATM 39 N N39 A4U . . . B 2 -15.152 -2.445 12.591 1 78.01 ? N39 A4U 801 A 1 HETATM 40 N N40 A4U . . . B 2 -13.742 -1.971 12.439 1 72.22 ? N40 A4U 801 A 1 HETATM 41 C C41 A4U . . . B 2 -13.081 -2.05 11.24 1 56.82 ? C41 A4U 801 A 1 HETATM 42 C C42 A4U . . . B 2 -13.812 -2.635 10.032 1 63.96 ? C42 A4U 801 A 1 HETATM 43 C C43 A4U . . . B 2 -15.181 -3.097 10.166 1 75.34 ? C43 A4U 801 A 1 HETATM 44 N N44 A4U . . . B 2 -11.808 -1.531 11.446 1 51.9 ? N44 A4U 801 A 1 HETATM 45 C C45 A4U . . . B 2 -11.697 -1.147 12.758 1 64.25 ? C45 A4U 801 A 1 HETATM 46 C C46 A4U . . . B 2 -12.928 -1.427 13.364 1 74.73 ? C46 A4U 801 A 1 HETATM 47 C C47 A4U . . . B 2 -13.42 -1.232 14.772 1 71.46 ? C47 A4U 801 A 1 HETATM 48 C C48 A4U . . . B 2 -13.878 -1.127 15.854 1 74.87 ? C48 A4U 801 A 1 HETATM 49 O O49 A4U . . . B 2 -17.844 -4.307 11.047 1 97.07 ? O49 A4U 801 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 49 #