data_8J68 # _model_server_result.job_id CNY9emHScuiWDtxbKNIzew _model_server_result.datetime_utc '2024-10-11 02:27:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j68 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8J68 # _exptl.entry_id 8J68 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J68 _cell.length_a 53.905 _cell.length_b 53.905 _cell.length_c 137.408 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J68 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 86 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 86 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 86 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 86 _struct_conn.ptnr2_symmetry 7_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.235 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 8J68 _atom_sites.fract_transf_matrix[1][1] 0.018551 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 201 143 FMN FMN . C 3 HOH A 1 301 466 HOH HOH . C 3 HOH A 2 302 422 HOH HOH . C 3 HOH A 3 303 177 HOH HOH . C 3 HOH A 4 304 465 HOH HOH . C 3 HOH A 5 305 258 HOH HOH . C 3 HOH A 6 306 64 HOH HOH . C 3 HOH A 7 307 183 HOH HOH . C 3 HOH A 8 308 22 HOH HOH . C 3 HOH A 9 309 417 HOH HOH . C 3 HOH A 10 310 370 HOH HOH . C 3 HOH A 11 311 23 HOH HOH . C 3 HOH A 12 312 57 HOH HOH . C 3 HOH A 13 313 330 HOH HOH . C 3 HOH A 14 314 63 HOH HOH . C 3 HOH A 15 315 429 HOH HOH . C 3 HOH A 16 316 282 HOH HOH . C 3 HOH A 17 317 469 HOH HOH . C 3 HOH A 18 318 83 HOH HOH . C 3 HOH A 19 319 290 HOH HOH . C 3 HOH A 20 320 218 HOH HOH . C 3 HOH A 21 321 395 HOH HOH . C 3 HOH A 22 322 48 HOH HOH . C 3 HOH A 23 323 468 HOH HOH . C 3 HOH A 24 324 99 HOH HOH . C 3 HOH A 25 325 433 HOH HOH . C 3 HOH A 26 326 215 HOH HOH . C 3 HOH A 27 327 86 HOH HOH . C 3 HOH A 28 328 459 HOH HOH . C 3 HOH A 29 329 52 HOH HOH . C 3 HOH A 30 330 342 HOH HOH . C 3 HOH A 31 331 39 HOH HOH . C 3 HOH A 32 332 98 HOH HOH . C 3 HOH A 33 333 453 HOH HOH . C 3 HOH A 34 334 341 HOH HOH . C 3 HOH A 35 335 193 HOH HOH . C 3 HOH A 36 336 87 HOH HOH . C 3 HOH A 37 337 20 HOH HOH . C 3 HOH A 38 338 309 HOH HOH . C 3 HOH A 39 339 1 HOH HOH . C 3 HOH A 40 340 73 HOH HOH . C 3 HOH A 41 341 276 HOH HOH . C 3 HOH A 42 342 198 HOH HOH . C 3 HOH A 43 343 58 HOH HOH . C 3 HOH A 44 344 263 HOH HOH . C 3 HOH A 45 345 9 HOH HOH . C 3 HOH A 46 346 167 HOH HOH . C 3 HOH A 47 347 10 HOH HOH . C 3 HOH A 48 348 149 HOH HOH . C 3 HOH A 49 349 19 HOH HOH . C 3 HOH A 50 350 15 HOH HOH . C 3 HOH A 51 351 93 HOH HOH . C 3 HOH A 52 352 103 HOH HOH . C 3 HOH A 53 353 445 HOH HOH . C 3 HOH A 54 354 170 HOH HOH . C 3 HOH A 55 355 61 HOH HOH . C 3 HOH A 56 356 104 HOH HOH . C 3 HOH A 57 357 69 HOH HOH . C 3 HOH A 58 358 155 HOH HOH . C 3 HOH A 59 359 55 HOH HOH . C 3 HOH A 60 360 355 HOH HOH . C 3 HOH A 61 361 91 HOH HOH . C 3 HOH A 62 362 443 HOH HOH . C 3 HOH A 63 363 89 HOH HOH . C 3 HOH A 64 364 378 HOH HOH . C 3 HOH A 65 365 387 HOH HOH . C 3 HOH A 66 366 315 HOH HOH . C 3 HOH A 67 367 68 HOH HOH . C 3 HOH A 68 368 90 HOH HOH . C 3 HOH A 69 369 426 HOH HOH . C 3 HOH A 70 370 380 HOH HOH . C 3 HOH A 71 371 231 HOH HOH . C 3 HOH A 72 372 454 HOH HOH . C 3 HOH A 73 373 462 HOH HOH . C 3 HOH A 74 374 324 HOH HOH . C 3 HOH A 75 375 351 HOH HOH . C 3 HOH A 76 376 142 HOH HOH . C 3 HOH A 77 377 244 HOH HOH . C 3 HOH A 78 378 457 HOH HOH . C 3 HOH A 79 379 49 HOH HOH . C 3 HOH A 80 380 318 HOH HOH . C 3 HOH A 81 381 470 HOH HOH . C 3 HOH A 82 382 156 HOH HOH . C 3 HOH A 83 383 458 HOH HOH . C 3 HOH A 84 384 410 HOH HOH . C 3 HOH A 85 385 375 HOH HOH . C 3 HOH A 86 386 101 HOH HOH . C 3 HOH A 87 387 259 HOH HOH . C 3 HOH A 88 388 329 HOH HOH . C 3 HOH A 89 389 139 HOH HOH . C 3 HOH A 90 390 154 HOH HOH . C 3 HOH A 91 391 114 HOH HOH . C 3 HOH A 92 392 472 HOH HOH . C 3 HOH A 93 393 261 HOH HOH . C 3 HOH A 94 394 418 HOH HOH . C 3 HOH A 95 395 153 HOH HOH . C 3 HOH A 96 396 436 HOH HOH . C 3 HOH A 97 397 452 HOH HOH . C 3 HOH A 98 398 264 HOH HOH . C 3 HOH A 99 399 279 HOH HOH . C 3 HOH A 100 400 382 HOH HOH . C 3 HOH A 101 401 448 HOH HOH . C 3 HOH A 102 402 284 HOH HOH . C 3 HOH A 103 403 289 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -20.033 -13.661 -11.347 1 29.07 0 N1 FMN 201 A 1 HETATM 2 C C2 FMN . . . B 2 -18.939 -14.253 -11.761 1 26.61 0 C2 FMN 201 A 1 HETATM 3 O O2 FMN . . . B 2 -18.994 -15.441 -12.188 1 28.37 0 O2 FMN 201 A 1 HETATM 4 N N3 FMN . . . B 2 -17.717 -13.636 -11.639 1 24.86 0 N3 FMN 201 A 1 HETATM 5 C C4 FMN . . . B 2 -17.568 -12.336 -11.174 1 26.1 0 C4 FMN 201 A 1 HETATM 6 O O4 FMN . . . B 2 -16.435 -11.851 -11.046 1 26.08 0 O4 FMN 201 A 1 HETATM 7 C C4A FMN . . . B 2 -18.728 -11.679 -10.759 1 27.31 0 C4A FMN 201 A 1 HETATM 8 N N5 FMN . . . B 2 -18.656 -10.423 -10.323 1 25.91 0 N5 FMN 201 A 1 HETATM 9 C C5A FMN . . . B 2 -19.834 -9.834 -9.918 1 23.84 0 C5A FMN 201 A 1 HETATM 10 C C6 FMN . . . B 2 -19.775 -8.515 -9.404 1 26.95 0 C6 FMN 201 A 1 HETATM 11 C C7 FMN . . . B 2 -20.895 -7.852 -8.974 1 30.23 0 C7 FMN 201 A 1 HETATM 12 C C7M FMN . . . B 2 -20.792 -6.439 -8.451 1 35.43 0 C7M FMN 201 A 1 HETATM 13 C C8 FMN . . . B 2 -22.139 -8.481 -9.071 1 27.28 0 C8 FMN 201 A 1 HETATM 14 C C8M FMN . . . B 2 -23.383 -7.776 -8.587 1 30.11 0 C8M FMN 201 A 1 HETATM 15 C C9 FMN . . . B 2 -22.22 -9.785 -9.548 1 24.59 0 C9 FMN 201 A 1 HETATM 16 C C9A FMN . . . B 2 -21.083 -10.487 -9.985 1 26.23 0 C9A FMN 201 A 1 HETATM 17 N N10 FMN . . . B 2 -21.117 -11.804 -10.477 1 26.01 0 N10 FMN 201 A 1 HETATM 18 C C10 FMN . . . B 2 -19.953 -12.43 -10.881 1 28.12 0 C10 FMN 201 A 1 HETATM 19 C C1' FMN . . . B 2 -22.382 -12.57 -10.537 1 29.63 0 C1' FMN 201 A 1 HETATM 20 C C2' FMN . . . B 2 -23.148 -12.459 -11.826 1 29.69 0 C2' FMN 201 A 1 HETATM 21 O O2' FMN . . . B 2 -23.1 -11.16 -12.303 1 34.38 0 O2' FMN 201 A 1 HETATM 22 C C3' FMN . . . B 2 -24.625 -12.806 -11.568 1 35.73 0 C3' FMN 201 A 1 HETATM 23 O O3' FMN . . . B 2 -25.139 -11.968 -10.568 1 32.49 0 O3' FMN 201 A 1 HETATM 24 C C4' FMN . . . B 2 -24.88 -14.24 -11.099 1 37.12 0 C4' FMN 201 A 1 HETATM 25 O O4' FMN . . . B 2 -24.399 -15.096 -12.128 1 35.87 0 O4' FMN 201 A 1 HETATM 26 C C5' FMN . . . B 2 -26.352 -14.502 -10.865 1 38.28 0 C5' FMN 201 A 1 HETATM 27 O O5' FMN . . . B 2 -26.971 -14.135 -12.137 1 45.4 0 O5' FMN 201 A 1 HETATM 28 P P FMN . . . B 2 -28.546 -14.445 -12.428 1 59.11 0 P FMN 201 A 1 HETATM 29 O O1P FMN . . . B 2 -29.345 -14.168 -11.14 1 51.5 0 O1P FMN 201 A 1 HETATM 30 O O2P FMN . . . B 2 -28.876 -13.485 -13.559 1 59.94 0 O2P FMN 201 A 1 HETATM 31 O O3P FMN . . . B 2 -28.563 -15.906 -12.79 1 53.76 0 O3P FMN 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 31 #