data_8J6M # _model_server_result.job_id sHg96Kd9Yo9pbTiVc8qHQw _model_server_result.datetime_utc '2024-12-04 08:40:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j6m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":904}' # _entry.id 8J6M # _exptl.entry_id 8J6M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J6M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J6M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 401 B CYS 130 1_555 A SG CYS 493 B CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 483 B CYS 212 1_555 A SG CYS 542 B CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 750 B CYS 479 1_555 A SG CYS 836 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 756 B CYS 485 1_555 A SG CYS 1053 B CYS 782 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 B SG CYS 401 A CYS 130 1_555 B SG CYS 493 A CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 B SG CYS 483 A CYS 212 1_555 B SG CYS 542 A CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf7 B SG CYS 750 A CYS 479 1_555 B SG CYS 836 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 B SG CYS 756 A CYS 485 1_555 B SG CYS 1053 A CYS 782 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc1 A O ASN 490 B ASN 219 1_555 H NA NA . B NA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? metalc ? metalc2 A O MET 492 B MET 221 1_555 H NA NA . B NA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc3 A O PRO 494 B PRO 223 1_555 H NA NA . B NA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.177 ? metalc ? metalc4 A NE2 HIS 834 B HIS 563 1_555 G ZN ZN . B ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc5 A OD1 ASP 845 B ASP 574 1_555 G ZN ZN . B ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc6 A OD2 ASP 845 B ASP 574 1_555 G ZN ZN . B ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc7 A NE2 HIS 1062 B HIS 791 1_555 G ZN ZN . B ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc8 A NE2 HIS 1066 B HIS 795 1_555 G ZN ZN . B ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc9 B NE2 HIS 834 A HIS 563 1_555 J ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc10 B OD1 ASP 845 A ASP 574 1_555 J ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc11 B OD2 ASP 845 A ASP 574 1_555 J ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc12 B NE2 HIS 1062 A HIS 791 1_555 J ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc13 B NE2 HIS 1066 A HIS 795 1_555 J ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8J6M _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CLR B 1 901 907 CLR CLR . D 2 CLR B 1 902 908 CLR CLR . E 2 CLR B 1 903 909 CLR CLR . F 2 CLR B 1 904 910 CLR CLR . G 3 ZN B 1 905 1 ZN ZN . H 4 NA B 1 906 1 NA NA . I 5 OLA B 1 907 901 OLA OLA . J 3 ZN A 1 901 2 ZN ZN . K 2 CLR A 1 902 907 CLR CLR . L 2 CLR A 1 903 908 CLR CLR . M 2 CLR A 1 904 909 CLR CLR . N 2 CLR A 1 905 910 CLR CLR . O 5 OLA A 1 906 901 OLA OLA . P 6 HOH B 1 1001 2 HOH HOH . P 6 HOH B 2 1002 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . F 2 164.583 182.227 192.874 1 75.51 ? C1 CLR 904 B 1 HETATM 2 C C2 CLR . . . F 2 163.267 182.187 193.647 1 75.51 ? C2 CLR 904 B 1 HETATM 3 C C3 CLR . . . F 2 163.205 183.181 194.807 1 75.51 ? C3 CLR 904 B 1 HETATM 4 C C4 CLR . . . F 2 164.497 183.982 194.893 1 75.51 ? C4 CLR 904 B 1 HETATM 5 C C5 CLR . . . F 2 164.872 184.532 193.539 1 75.51 ? C5 CLR 904 B 1 HETATM 6 C C6 CLR . . . F 2 165.266 185.8 193.397 1 75.51 ? C6 CLR 904 B 1 HETATM 7 C C7 CLR . . . F 2 166.586 186.038 192.712 1 75.51 ? C7 CLR 904 B 1 HETATM 8 C C8 CLR . . . F 2 166.646 185.177 191.456 1 75.51 ? C8 CLR 904 B 1 HETATM 9 C C9 CLR . . . F 2 166.231 183.725 191.694 1 75.51 ? C9 CLR 904 B 1 HETATM 10 C C10 CLR . . . F 2 164.862 183.624 192.347 1 75.51 ? C10 CLR 904 B 1 HETATM 11 C C11 CLR . . . F 2 166.287 182.95 190.378 1 75.51 ? C11 CLR 904 B 1 HETATM 12 C C12 CLR . . . F 2 167.656 183.045 189.699 1 75.51 ? C12 CLR 904 B 1 HETATM 13 C C13 CLR . . . F 2 168.065 184.5 189.523 1 75.51 ? C13 CLR 904 B 1 HETATM 14 C C14 CLR . . . F 2 168.053 185.135 190.894 1 75.51 ? C14 CLR 904 B 1 HETATM 15 C C15 CLR . . . F 2 168.771 186.456 190.706 1 75.51 ? C15 CLR 904 B 1 HETATM 16 C C16 CLR . . . F 2 169.889 186.082 189.738 1 75.51 ? C16 CLR 904 B 1 HETATM 17 C C17 CLR . . . F 2 169.489 184.771 189.057 1 75.51 ? C17 CLR 904 B 1 HETATM 18 C C18 CLR . . . F 2 167.085 185.237 188.611 1 75.51 ? C18 CLR 904 B 1 HETATM 19 C C19 CLR . . . F 2 163.787 184.049 191.348 1 75.51 ? C19 CLR 904 B 1 HETATM 20 C C20 CLR . . . F 2 169.721 184.89 187.555 1 75.51 ? C20 CLR 904 B 1 HETATM 21 C C21 CLR . . . F 2 169.744 183.545 186.84 1 75.51 ? C21 CLR 904 B 1 HETATM 22 C C22 CLR . . . F 2 171.048 185.605 187.344 1 75.51 ? C22 CLR 904 B 1 HETATM 23 C C23 CLR . . . F 2 171.261 186.084 185.915 1 75.51 ? C23 CLR 904 B 1 HETATM 24 C C24 CLR . . . F 2 172.712 186.519 185.749 1 75.51 ? C24 CLR 904 B 1 HETATM 25 C C25 CLR . . . F 2 172.896 187.494 184.593 1 75.51 ? C25 CLR 904 B 1 HETATM 26 C C26 CLR . . . F 2 172.199 186.998 183.333 1 75.51 ? C26 CLR 904 B 1 HETATM 27 C C27 CLR . . . F 2 172.433 188.892 184.977 1 75.51 ? C27 CLR 904 B 1 HETATM 28 O O1 CLR . . . F 2 162.115 184.083 194.592 1 75.51 ? O1 CLR 904 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #