data_8J7F # _model_server_result.job_id tmlO-Deqpu5ywrarrtQhWw _model_server_result.datetime_utc '2024-11-08 05:02:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":402}' # _entry.id 8J7F # _exptl.entry_id 8J7F _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J7F _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N ? 3 P N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B CE1 PHE 150 B PHE 218 1_555 N C27 CLR . B CLR 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? metalc ? metalc1 A OD1 ASN 181 A ASN 249 1_555 F CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.196 ? metalc ? metalc2 B OD1 ASN 181 B ASN 249 1_555 K CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? metalc ? metalc3 C OD1 ASN 181 C ASN 249 1_555 P CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc4 C OE2 GLU 217 C GLU 285 1_555 Q CA CA . C CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc5 Q CA CA . C CA 402 1_555 D OD1 ASN 181 D ASN 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8J7F _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 CA A 1 401 4 CA CA . G 4 POV A 1 402 1301 POV POV . H 5 CLR A 1 403 1401 CLR CLR . I 5 CLR A 1 404 1501 CLR CLR . J 5 CLR A 1 405 1701 CLR CLR . K 3 CA B 1 401 3 CA CA . L 4 POV B 1 402 401 POV POV . M 5 CLR B 1 403 1101 CLR CLR . N 5 CLR B 1 404 1201 CLR CLR . O 5 CLR B 1 405 1401 CLR CLR . P 3 CA C 1 401 1 CA CA . Q 3 CA C 1 402 2 CA CA . R 4 POV C 1 403 1101 POV POV . S 5 CLR C 1 404 1201 CLR CLR . T 5 CLR C 1 405 1401 CLR CLR . U 5 CLR C 1 406 1501 CLR CLR . V 4 POV D 1 1101 1101 POV POV . W 5 CLR D 1 1102 1301 CLR CLR . X 5 CLR D 1 1103 1401 CLR CLR . Y 5 CLR D 1 1104 1501 CLR CLR . Z 6 HOH A 1 501 11 HOH HOH . Z 6 HOH A 2 502 6 HOH HOH . AA 6 HOH B 1 501 1 HOH HOH . AA 6 HOH B 2 502 10 HOH HOH . AA 6 HOH B 3 503 8 HOH HOH . BA 6 HOH C 1 501 2 HOH HOH . BA 6 HOH C 2 502 12 HOH HOH . BA 6 HOH C 3 503 5 HOH HOH . CA 6 HOH D 1 1201 7 HOH HOH . CA 6 HOH D 2 1202 9 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 3 _atom_site.Cartn_x 180.081 _atom_site.Cartn_y 178.701 _atom_site.Cartn_z 135.627 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #