data_8J7M
#
_model_server_result.job_id            YWp5NW4ww3-guFTCSsDt5g 
_model_server_result.datetime_utc      '2024-12-01 07:07:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8j7m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":901}' 
#
_entry.id    8J7M 
#
_exptl.entry_id    8J7M 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8J7M 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8J7M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 L N N 
? 2 O N N 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 335 n n 
N C13 POV sing 336 n n 
N C14 POV sing 337 n n 
N C15 POV sing 338 n n 
P O11 POV sing 339 n n 
P O12 POV sing 340 n n 
P O13 POV sing 341 n n 
P O14 POV doub 342 n n 
C1 C2 POV sing 343 n n 
C1 O11 POV sing 344 n n 
C1 H1 POV sing 345 n n 
C1 H1A POV sing 346 n n 
C2 C3 POV sing 347 n n 
C2 O21 POV sing 348 n n 
C2 H2 POV sing 349 n n 
C3 O31 POV sing 350 n n 
C3 H3 POV sing 351 n n 
C3 H3A POV sing 352 n n 
C210 C211 POV sing 353 n n 
C210 C29 POV doub 354 z n 
C210 H210 POV sing 355 n n 
C310 C311 POV sing 356 n n 
C310 C39 POV sing 357 n n 
C310 H310 POV sing 358 n n 
C310 H31A POV sing 359 n n 
C11 C12 POV sing 360 n n 
C11 O12 POV sing 361 n n 
C11 H11 POV sing 362 n n 
C11 H11A POV sing 363 n n 
C211 C212 POV sing 364 n n 
C211 H211 POV sing 365 n n 
C211 H21A POV sing 366 n n 
C311 C312 POV sing 367 n n 
C311 H311 POV sing 368 n n 
C311 H31B POV sing 369 n n 
C12 H12 POV sing 370 n n 
C12 H12A POV sing 371 n n 
C212 C213 POV sing 372 n n 
C212 H212 POV sing 373 n n 
C212 H21B POV sing 374 n n 
C312 C313 POV sing 375 n n 
C312 H312 POV sing 376 n n 
C312 H31C POV sing 377 n n 
C13 H13 POV sing 378 n n 
C13 H13A POV sing 379 n n 
C13 H13B POV sing 380 n n 
C213 C214 POV sing 381 n n 
C213 H213 POV sing 382 n n 
C213 H21C POV sing 383 n n 
C313 C314 POV sing 384 n n 
C313 H313 POV sing 385 n n 
C313 H31D POV sing 386 n n 
C14 H14 POV sing 387 n n 
C14 H14A POV sing 388 n n 
C14 H14B POV sing 389 n n 
C214 C215 POV sing 390 n n 
C214 H214 POV sing 391 n n 
C214 H21D POV sing 392 n n 
C314 C315 POV sing 393 n n 
C314 H314 POV sing 394 n n 
C314 H31E POV sing 395 n n 
C15 H15 POV sing 396 n n 
C15 H15A POV sing 397 n n 
C15 H15B POV sing 398 n n 
C215 C216 POV sing 399 n n 
C215 H215 POV sing 400 n n 
C215 H21E POV sing 401 n n 
C315 C316 POV sing 402 n n 
C315 H315 POV sing 403 n n 
C315 H31F POV sing 404 n n 
C216 C217 POV sing 405 n n 
C216 H216 POV sing 406 n n 
C216 H21F POV sing 407 n n 
C316 H316 POV sing 408 n n 
C316 H31G POV sing 409 n n 
C316 H31H POV sing 410 n n 
C217 C218 POV sing 411 n n 
C217 H217 POV sing 412 n n 
C217 H21G POV sing 413 n n 
C218 H218 POV sing 414 n n 
C218 H21H POV sing 415 n n 
C218 H21J POV sing 416 n n 
C21 O21 POV sing 417 n n 
C21 C22 POV sing 418 n n 
C21 O22 POV doub 419 n n 
C22 C23 POV sing 420 n n 
C22 H22 POV sing 421 n n 
C22 H22A POV sing 422 n n 
C23 C24 POV sing 423 n n 
C23 H23 POV sing 424 n n 
C23 H23A POV sing 425 n n 
C24 C25 POV sing 426 n n 
C24 H24 POV sing 427 n n 
C24 H24A POV sing 428 n n 
C25 C26 POV sing 429 n n 
C25 H25 POV sing 430 n n 
C25 H25A POV sing 431 n n 
C26 C27 POV sing 432 n n 
C26 H26 POV sing 433 n n 
C26 H26A POV sing 434 n n 
C27 C28 POV sing 435 n n 
C27 H27 POV sing 436 n n 
C27 H27A POV sing 437 n n 
C28 C29 POV sing 438 n n 
C28 H28 POV sing 439 n n 
C28 H28A POV sing 440 n n 
C29 H29 POV sing 441 n n 
C31 O31 POV sing 442 n n 
C31 C32 POV sing 443 n n 
C31 O32 POV doub 444 n n 
C32 C33 POV sing 445 n n 
C32 H32 POV sing 446 n n 
C32 H32A POV sing 447 n n 
C33 C34 POV sing 448 n n 
C33 H33 POV sing 449 n n 
C33 H33A POV sing 450 n n 
C34 C35 POV sing 451 n n 
C34 H34 POV sing 452 n n 
C34 H34A POV sing 453 n n 
C35 C36 POV sing 454 n n 
C35 H35 POV sing 455 n n 
C35 H35A POV sing 456 n n 
C36 C37 POV sing 457 n n 
C36 H36 POV sing 458 n n 
C36 H36A POV sing 459 n n 
C37 C38 POV sing 460 n n 
C37 H37 POV sing 461 n n 
C37 H37A POV sing 462 n n 
C38 C39 POV sing 463 n n 
C38 H38 POV sing 464 n n 
C38 H38A POV sing 465 n n 
C39 H39 POV sing 466 n n 
C39 H39A POV sing 467 n n 
#
_atom_sites.entry_id                     8J7M 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POV A 1 901 901 POV POV . 
F 3 CLR A 1 902 1001 CLR CLR . 
G 3 CLR A 1 903 1101 CLR CLR . 
H 2 POV D 1 901 901 POV POV . 
I 3 CLR D 1 902 1001 CLR CLR . 
J 3 CLR D 1 903 1101 CLR CLR . 
K 3 CLR D 1 904 1201 CLR CLR . 
L 2 POV B 1 901 901 POV POV . 
M 3 CLR B 1 902 1001 CLR CLR . 
N 3 CLR B 1 903 1101 CLR CLR . 
O 2 POV C 1 901 901 POV POV . 
P 3 CLR C 1 902 1001 CLR CLR . 
Q 3 CLR C 1 903 1101 CLR CLR . 
R 3 CLR C 1 904 1201 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P POV . . . L 2 133.082 107.664 141.9 0.75 56.16 ? P POV 901 B 1 
HETATM 2 C C1 POV . . . L 2 132.219 107.13 139.455 1 43.73 ? C1 POV 901 B 1 
HETATM 3 C C2 POV . . . L 2 131.303 107.657 138.357 1 49.66 ? C2 POV 901 B 1 
HETATM 4 C C3 POV . . . L 2 131.085 106.558 137.312 1 38.78 ? C3 POV 901 B 1 
HETATM 5 C C310 POV . . . L 2 131.897 114.632 129.894 1 37.81 ? C310 POV 901 B 1 
HETATM 6 O O11 POV . . . L 2 132.134 107.941 140.625 0.45 52.14 ? O11 POV 901 B 1 
HETATM 7 C C311 POV . . . L 2 131.516 116.106 129.887 1 39.47 ? C311 POV 901 B 1 
HETATM 8 O O12 POV . . . L 2 134.563 107.737 141.279 1 69.12 ? O12 POV 901 B 1 
HETATM 9 C C312 POV . . . L 2 130.048 116.289 130.242 1 41.29 ? C312 POV 901 B 1 
HETATM 10 O O13 POV . . . L 2 132.936 108.822 142.853 1 61.48 -1 O13 POV 901 B 1 
HETATM 11 C C313 POV . . . L 2 129.224 116.645 129.017 1 45.67 ? C313 POV 901 B 1 
HETATM 12 O O14 POV . . . L 2 132.844 106.256 142.391 1 70.25 ? O14 POV 901 B 1 
HETATM 13 C C314 POV . . . L 2 127.744 116.385 129.245 1 47.12 ? C314 POV 901 B 1 
HETATM 14 C C315 POV . . . L 2 126.936 117.674 129.159 1 47.76 ? C315 POV 901 B 1 
HETATM 15 C C316 POV . . . L 2 125.719 117.636 130.058 1 52.43 ? C316 POV 901 B 1 
HETATM 16 C C21 POV . . . L 2 131.393 110.072 138.401 1 40.99 ? C21 POV 901 B 1 
HETATM 17 O O21 POV . . . L 2 131.871 108.842 137.785 1 47.26 ? O21 POV 901 B 1 
HETATM 18 C C22 POV . . . L 2 130.797 111.193 137.582 1 30.72 ? C22 POV 901 B 1 
HETATM 19 O O22 POV . . . L 2 131.481 110.188 139.608 1 53.13 ? O22 POV 901 B 1 
HETATM 20 C C23 POV . . . L 2 131.257 111.099 136.138 1 42.95 ? C23 POV 901 B 1 
HETATM 21 C C24 POV . . . L 2 130.987 112.387 135.376 1 39.64 ? C24 POV 901 B 1 
HETATM 22 C C25 POV . . . L 2 130.175 112.08 134.131 1 41.54 ? C25 POV 901 B 1 
HETATM 23 C C26 POV . . . L 2 130.055 113.284 133.214 1 43.96 ? C26 POV 901 B 1 
HETATM 24 C C27 POV . . . L 2 128.828 113.145 132.326 1 39.85 ? C27 POV 901 B 1 
HETATM 25 C C31 POV . . . L 2 131.635 106.084 134.906 1 44.77 ? C31 POV 901 B 1 
HETATM 26 O O31 POV . . . L 2 131.888 106.774 136.156 1 36.81 ? O31 POV 901 B 1 
HETATM 27 C C32 POV . . . L 2 131.947 106.747 133.582 1 45.58 ? C32 POV 901 B 1 
HETATM 28 O O32 POV . . . L 2 131.171 104.961 134.95 1 49.5 ? O32 POV 901 B 1 
HETATM 29 C C33 POV . . . L 2 132.809 107.989 133.779 1 37.3 ? C33 POV 901 B 1 
HETATM 30 C C34 POV . . . L 2 132.795 108.843 132.521 1 41.14 ? C34 POV 901 B 1 
HETATM 31 C C35 POV . . . L 2 133.735 110.039 132.575 1 44.42 ? C35 POV 901 B 1 
HETATM 32 C C36 POV . . . L 2 133.739 110.744 131.226 1 42.89 ? C36 POV 901 B 1 
HETATM 33 C C37 POV . . . L 2 133.998 112.236 131.366 1 44.95 ? C37 POV 901 B 1 
HETATM 34 C C38 POV . . . L 2 133.743 112.974 130.061 1 43.33 ? C38 POV 901 B 1 
HETATM 35 C C39 POV . . . L 2 133.347 114.42 130.297 1 38.04 ? C39 POV 901 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#