data_8J83
#
_model_server_result.job_id            9qb5ilHzGOQhT-dcen-udg 
_model_server_result.datetime_utc      '2025-03-04 08:40:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8j83 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":601}' 
#
_entry.id    8J83 
#
_exptl.entry_id    8J83 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.72 
_cell.angle_gamma         90 
_cell.entry_id            8J83 
_cell.length_a            232.86 
_cell.length_b            73.95 
_cell.length_c            95.74 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8J83 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      9 
_struct_asym.id                             N 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 102 A CYS 102 1_555 F FE1 FES . A FES 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc2 A SG CYS 115 A CYS 115 1_555 F FE1 FES . A FES 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc3 A SG CYS 118 A CYS 118 1_555 F FE2 FES . A FES 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc4 A SG CYS 132 A CYS 132 1_555 F FE2 FES . A FES 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc5 A SG CYS 213 A CYS 213 1_555 G FE2 SF4 . A SF4 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc6 A SG CYS 216 A CYS 216 1_555 G FE1 SF4 . A SF4 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc7 A SG CYS 219 A CYS 219 1_555 G FE4 SF4 . A SF4 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc8 A SG CYS 223 A CYS 223 1_555 H FE4 SF4 . A SF4 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc9 A SG CYS 256 A CYS 256 1_555 H FE2 SF4 . A SF4 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc10 A SG CYS 259 A CYS 259 1_555 H FE3 SF4 . A SF4 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc11 A SG CYS 262 A CYS 262 1_555 H FE1 SF4 . A SF4 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc12 A SG CYS 266 A CYS 266 1_555 G FE3 SF4 . A SF4 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc13 A SG CYS 295 A CYS 295 1_555 I FE1 SF4 . A SF4 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc14 A SG CYS 298 A CYS 298 1_555 I FE3 SF4 . A SF4 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc15 A SG CYS 302 A CYS 302 1_555 I FE4 SF4 . A SF4 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc16 A SG CYS 329 A CYS 329 1_555 I FE2 SF4 . A SF4 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc17 A SG CYS 436 A CYS 436 1_555 E W W . A W 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc18 C S12 MGD . A MGD 1001 1_555 E W W . A W 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc19 C S13 MGD . A MGD 1001 1_555 E W W . A W 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc20 D S12 MGD . A MGD 1002 1_555 E W W . A W 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc21 D S13 MGD . A MGD 1002 1_555 E W W . A W 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc22 E W W . A W 1003 1_555 S O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc23 B SG CYS 113 B CYS 113 1_555 P FE1 FES . B FES 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc24 B SG CYS 118 B CYS 118 1_555 P FE1 FES . B FES 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc25 B SG CYS 146 B CYS 146 1_555 P FE2 FES . B FES 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc26 B SG CYS 150 B CYS 150 1_555 P FE2 FES . B FES 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc27 B SG CYS 502 B CYS 502 1_555 O FE2 SF4 . B SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc28 B SG CYS 505 B CYS 505 1_555 O FE3 SF4 . B SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc29 B SG CYS 508 B CYS 508 1_555 O FE1 SF4 . B SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc30 B SG CYS 542 B CYS 542 1_555 O FE4 SF4 . B SF4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 87 n n 
N1 C10 FMN doub 88 n n 
C2 O2 FMN doub 89 n n 
C2 N3 FMN sing 90 n n 
N3 C4 FMN sing 91 n n 
N3 HN3 FMN sing 92 n n 
C4 O4 FMN doub 93 n n 
C4 C4A FMN sing 94 n n 
C4A N5 FMN doub 95 n n 
C4A C10 FMN sing 96 n n 
N5 C5A FMN sing 97 n n 
C5A C6 FMN doub 98 n y 
C5A C9A FMN sing 99 n y 
C6 C7 FMN sing 100 n y 
C6 H6 FMN sing 101 n n 
C7 C7M FMN sing 102 n n 
C7 C8 FMN doub 103 n y 
C7M HM71 FMN sing 104 n n 
C7M HM72 FMN sing 105 n n 
C7M HM73 FMN sing 106 n n 
C8 C8M FMN sing 107 n n 
C8 C9 FMN sing 108 n y 
C8M HM81 FMN sing 109 n n 
C8M HM82 FMN sing 110 n n 
C8M HM83 FMN sing 111 n n 
C9 C9A FMN doub 112 n y 
C9 H9 FMN sing 113 n n 
C9A N10 FMN sing 114 n n 
N10 C10 FMN sing 115 n n 
N10 C1' FMN sing 116 n n 
C1' C2' FMN sing 117 n n 
C1' "H1'1" FMN sing 118 n n 
C1' "H1'2" FMN sing 119 n n 
C2' O2' FMN sing 120 n n 
C2' C3' FMN sing 121 n n 
C2' H2' FMN sing 122 n n 
O2' HO2' FMN sing 123 n n 
C3' O3' FMN sing 124 n n 
C3' C4' FMN sing 125 n n 
C3' H3' FMN sing 126 n n 
O3' HO3' FMN sing 127 n n 
C4' O4' FMN sing 128 n n 
C4' C5' FMN sing 129 n n 
C4' H4' FMN sing 130 n n 
O4' HO4' FMN sing 131 n n 
C5' O5' FMN sing 132 n n 
C5' "H5'1" FMN sing 133 n n 
C5' "H5'2" FMN sing 134 n n 
O5' P FMN sing 135 n n 
P O1P FMN doub 136 n n 
P O2P FMN sing 137 n n 
P O3P FMN sing 138 n n 
O2P HOP2 FMN sing 139 n n 
O3P HOP3 FMN sing 140 n n 
#
_atom_sites.entry_id                     8J83 
_atom_sites.fract_transf_matrix[1][1]    0.004294 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00129 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013523 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010906 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MGD A 1 1001 1001 MGD MGD . 
D 3 MGD A 1 1002 1002 MGD MGD . 
E 4 W A 1 1003 1003 W W . 
F 5 FES A 1 1004 1011 FES FES . 
G 6 SF4 A 1 1005 1012 SF4 SF4 . 
H 6 SF4 A 1 1006 1013 SF4 SF4 . 
I 6 SF4 A 1 1007 1014 SF4 SF4 . 
J 7 GOL A 1 1008 1015 GOL GOL . 
K 7 GOL A 1 1009 1021 GOL GOL . 
L 8 PEG A 1 1010 1022 PEG PEG . 
M 7 GOL A 1 1011 607 GOL GOL . 
N 9 FMN B 1 601 601 FMN FMN . 
O 6 SF4 B 1 602 602 SF4 SF4 . 
P 5 FES B 1 603 603 FES FES . 
Q 7 GOL B 1 604 608 GOL GOL . 
R 7 GOL B 1 605 609 GOL GOL . 
S 10 HOH A 1 1101 1020 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . N 9 -24.381 14.246 19.045 1 49.4 ? N1 FMN 601 B 1 
HETATM 2 C C2 FMN . . . N 9 -24.787 12.961 19.139 1 49.6 ? C2 FMN 601 B 1 
HETATM 3 O O2 FMN . . . N 9 -23.879 12.031 19.554 1 50.25 ? O2 FMN 601 B 1 
HETATM 4 N N3 FMN . . . N 9 -26.056 12.572 18.842 1 49.46 ? N3 FMN 601 B 1 
HETATM 5 C C4 FMN . . . N 9 -26.991 13.45 18.43 1 49.14 ? C4 FMN 601 B 1 
HETATM 6 O O4 FMN . . . N 9 -28.248 13.033 18.133 1 49.5 ? O4 FMN 601 B 1 
HETATM 7 C C4A FMN . . . N 9 -26.613 14.88 18.304 1 49.29 ? C4A FMN 601 B 1 
HETATM 8 N N5 FMN . . . N 9 -27.484 15.832 17.898 1 49.15 ? N5 FMN 601 B 1 
HETATM 9 C C5A FMN . . . N 9 -27.099 17.126 17.8 1 49.07 ? C5A FMN 601 B 1 
HETATM 10 C C6 FMN . . . N 9 -28.016 18.08 17.384 1 48.22 ? C6 FMN 601 B 1 
HETATM 11 C C7 FMN . . . N 9 -27.649 19.419 17.269 1 48.28 ? C7 FMN 601 B 1 
HETATM 12 C C7M FMN . . . N 9 -28.685 20.414 16.816 1 47.49 ? C7M FMN 601 B 1 
HETATM 13 C C8 FMN . . . N 9 -26.288 19.923 17.597 1 48.77 ? C8 FMN 601 B 1 
HETATM 14 C C8M FMN . . . N 9 -25.746 20.761 16.443 1 48.57 ? C8M FMN 601 B 1 
HETATM 15 C C9 FMN . . . N 9 -25.335 18.878 18.012 1 48.99 ? C9 FMN 601 B 1 
HETATM 16 C C9A FMN . . . N 9 -25.7 17.54 18.132 1 49.33 ? C9A FMN 601 B 1 
HETATM 17 N N10 FMN . . . N 9 -24.777 16.549 18.557 1 49.91 ? N10 FMN 601 B 1 
HETATM 18 C C10 FMN . . . N 9 -25.217 15.219 18.643 1 49.41 ? C10 FMN 601 B 1 
HETATM 19 C C1' FMN . . . N 9 -23.381 16.829 18.91 1 49.5 ? C1' FMN 601 B 1 
HETATM 20 C C2' FMN . . . N 9 -23.33 17.034 20.416 1 49.29 ? C2' FMN 601 B 1 
HETATM 21 O O2' FMN . . . N 9 -23.698 18.386 20.706 1 49.52 ? O2' FMN 601 B 1 
HETATM 22 C C3' FMN . . . N 9 -21.967 16.698 21.021 1 49.98 ? C3' FMN 601 B 1 
HETATM 23 O O3' FMN . . . N 9 -20.925 17.213 20.183 1 50.16 ? O3' FMN 601 B 1 
HETATM 24 C C4' FMN . . . N 9 -21.806 15.186 21.183 1 49.95 ? C4' FMN 601 B 1 
HETATM 25 O O4' FMN . . . N 9 -22.921 14.606 21.871 1 50.15 ? O4' FMN 601 B 1 
HETATM 26 C C5' FMN . . . N 9 -20.526 14.806 21.918 1 49.97 ? C5' FMN 601 B 1 
HETATM 27 O O5' FMN . . . N 9 -19.466 14.905 20.979 1 50.83 ? O5' FMN 601 B 1 
HETATM 28 P P FMN . . . N 9 -18.46 13.69 20.648 1 50.68 ? P FMN 601 B 1 
HETATM 29 O O1P FMN . . . N 9 -18.812 12.586 21.597 1 49.51 ? O1P FMN 601 B 1 
HETATM 30 O O2P FMN . . . N 9 -18.829 13.392 19.205 1 50.86 ? O2P FMN 601 B 1 
HETATM 31 O O3P FMN . . . N 9 -17.108 14.326 20.865 1 50.56 ? O3P FMN 601 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#