data_8J8J
#
_model_server_result.job_id            WOvOf7JVem4YuZo3v11DHw 
_model_server_result.datetime_utc      '2024-11-30 11:22:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8j8j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":403}' 
#
_entry.id    8J8J 
#
_exptl.entry_id    8J8J 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8J8J 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8J8J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 73 D ASN 73 1_555 E MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? 
metalc ? metalc2 A OD2 ASP 77 D ASP 77 1_555 E MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? 
metalc ? metalc3 D O1A PRP . D PRP 401 1_555 E MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc4 D O3B PRP . D PRP 401 1_555 E MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? 
metalc ? metalc5 B OD1 ASN 73 A ASN 73 1_555 H MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? 
metalc ? metalc6 B OD2 ASP 77 A ASP 77 1_555 H MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? 
metalc ? metalc7 G O1A PRP . A PRP 401 1_555 H MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc8 G O3B PRP . A PRP 401 1_555 H MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.717 ? 
metalc ? metalc9 C OD1 ASN 73 B ASN 73 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? 
metalc ? metalc10 C OD2 ASP 77 B ASP 77 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? 
metalc ? metalc11 J O1A PRP . B PRP 401 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc12 J O3B PRP . B PRP 401 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD C05 PGW sing 235 n n 
CAD HAD PGW sing 236 n n 
CAD HADA PGW sing 237 n n 
OAE CAD PGW sing 238 n n 
OAE HOAE PGW sing 239 n n 
OAF C05 PGW sing 240 n n 
OAF HOAF PGW sing 241 n n 
P O13 PGW sing 242 n n 
P O11 PGW sing 243 n n 
C01 O03 PGW sing 244 n n 
C01 C02 PGW sing 245 n n 
C01 H01 PGW sing 246 n n 
C01 H01A PGW sing 247 n n 
C1 C2 PGW sing 248 n n 
O01 C1 PGW sing 249 n n 
C02 O01 PGW sing 250 n n 
C02 H02 PGW sing 251 n n 
C2 C3 PGW sing 252 n n 
C2 H2 PGW sing 253 n n 
C2 H2A PGW sing 254 n n 
O02 C1 PGW doub 255 n n 
C03 C02 PGW sing 256 n n 
C03 H03 PGW sing 257 n n 
C03 H03A PGW sing 258 n n 
C3 C4 PGW sing 259 n n 
C3 H3 PGW sing 260 n n 
C3 H3A PGW sing 261 n n 
C04 C05 PGW sing 262 n n 
C04 O12 PGW sing 263 n n 
C04 H04 PGW sing 264 n n 
C04 H04A PGW sing 265 n n 
C4 C5 PGW sing 266 n n 
C4 H4 PGW sing 267 n n 
C4 H4A PGW sing 268 n n 
O04 C19 PGW doub 269 n n 
C05 H05 PGW sing 270 n n 
C5 C6 PGW sing 271 n n 
C5 H5 PGW sing 272 n n 
C5 H5A PGW sing 273 n n 
C06 C07 PGW sing 274 n n 
C06 H06 PGW sing 275 n n 
C06 H06A PGW sing 276 n n 
C6 C7 PGW sing 277 n n 
C6 H6 PGW sing 278 n n 
C6 H6A PGW sing 279 n n 
C07 H07 PGW sing 280 n n 
C07 H07A PGW sing 281 n n 
C7 C8 PGW sing 282 n n 
C7 H7 PGW sing 283 n n 
C7 H7A PGW sing 284 n n 
C08 C07 PGW sing 285 n n 
C08 H08 PGW sing 286 n n 
C08 H08A PGW sing 287 n n 
C8 C9 PGW sing 288 n n 
C8 H8 PGW sing 289 n n 
C8 H8A PGW sing 290 n n 
C09 C08 PGW sing 291 n n 
C09 C11 PGW sing 292 n n 
C09 H09 PGW sing 293 n n 
C09 H09A PGW sing 294 n n 
C9 C10 PGW doub 295 z n 
C10 C06 PGW sing 296 n n 
C11 H11 PGW sing 297 n n 
C11 H11A PGW sing 298 n n 
O11 C03 PGW sing 299 n n 
C12 C11 PGW sing 300 n n 
C12 H12 PGW sing 301 n n 
C12 H12A PGW sing 302 n n 
O12 P PGW sing 303 n n 
C13 C12 PGW sing 304 n n 
C13 C14 PGW sing 305 n n 
C13 H13 PGW sing 306 n n 
C13 H13A PGW sing 307 n n 
O13 HO13 PGW sing 308 n n 
C14 H14 PGW sing 309 n n 
C14 H14A PGW sing 310 n n 
C14 H14B PGW sing 311 n n 
O14 P PGW doub 312 n n 
C15 C16 PGW sing 313 n n 
C15 H15 PGW sing 314 n n 
C15 H15A PGW sing 315 n n 
C16 H16 PGW sing 316 n n 
C16 H16A PGW sing 317 n n 
C17 C16 PGW sing 318 n n 
C17 C18 PGW sing 319 n n 
C17 H17 PGW sing 320 n n 
C17 H17A PGW sing 321 n n 
C18 C28 PGW sing 322 n n 
C18 H18 PGW sing 323 n n 
C18 H18A PGW sing 324 n n 
C19 O03 PGW sing 325 n n 
C19 C20 PGW sing 326 n n 
C20 C21 PGW sing 327 n n 
C20 H20 PGW sing 328 n n 
C20 H20A PGW sing 329 n n 
C21 C22 PGW sing 330 n n 
C21 H21 PGW sing 331 n n 
C21 H21A PGW sing 332 n n 
C22 C23 PGW sing 333 n n 
C22 H22 PGW sing 334 n n 
C22 H22A PGW sing 335 n n 
C23 C24 PGW sing 336 n n 
C23 H23 PGW sing 337 n n 
C23 H23A PGW sing 338 n n 
C24 C25 PGW sing 339 n n 
C24 H24 PGW sing 340 n n 
C24 H24A PGW sing 341 n n 
C25 C26 PGW sing 342 n n 
C25 H25 PGW sing 343 n n 
C25 H25A PGW sing 344 n n 
C26 C27 PGW sing 345 n n 
C26 H26 PGW sing 346 n n 
C26 H26A PGW sing 347 n n 
C27 C15 PGW sing 348 n n 
C27 H27 PGW sing 349 n n 
C27 H27A PGW sing 350 n n 
C28 H28 PGW sing 351 n n 
C28 H28A PGW sing 352 n n 
C29 H29 PGW sing 353 n n 
C29 H29A PGW sing 354 n n 
C29 H29B PGW sing 355 n n 
C30 C28 PGW sing 356 n n 
C30 C29 PGW sing 357 n n 
C30 H30 PGW sing 358 n n 
C30 H30A PGW sing 359 n n 
C9 H9 PGW sing 360 n n 
C10 H10 PGW sing 361 n n 
#
_atom_sites.entry_id                     8J8J 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 PRP D 1 401 1 PRP PRP . 
E 3 MG D 1 402 4 MG MG . 
F 4 PGW D 1 403 5 PGW LIG . 
G 2 PRP A 1 401 2 PRP PRP . 
H 3 MG A 1 402 5 MG MG . 
I 4 PGW A 1 403 4 PGW LIG . 
J 2 PRP B 1 401 3 PRP PRP . 
K 3 MG B 1 402 6 MG MG . 
L 4 PGW B 1 403 3 PGW LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAD PGW . . . F 4 155.007 164.208 158.303 1 44.72 ? CAD PGW 403 D 1 
HETATM 2 O OAE PGW . . . F 4 156.03 163.305 158.615 1 44.72 ? OAE PGW 403 D 1 
HETATM 3 O OAF PGW . . . F 4 153.08 163.504 159.454 1 44.72 ? OAF PGW 403 D 1 
HETATM 4 P P PGW . . . F 4 153.527 168.006 161.177 1 44.72 ? P PGW 403 D 1 
HETATM 5 C C01 PGW . . . F 4 154.961 169.267 157.051 1 44.72 ? C01 PGW 403 D 1 
HETATM 6 C C1 PGW . . . F 4 156.549 171.527 159.383 1 44.72 ? C1 PGW 403 D 1 
HETATM 7 O O01 PGW . . . F 4 155.85 170.859 158.359 1 44.72 ? O01 PGW 403 D 1 
HETATM 8 C C02 PGW . . . F 4 155.304 169.599 158.515 1 44.72 ? C02 PGW 403 D 1 
HETATM 9 C C2 PGW . . . F 4 157.28 172.847 159.044 1 44.72 ? C2 PGW 403 D 1 
HETATM 10 O O02 PGW . . . F 4 156.589 171.121 160.492 1 44.72 ? O02 PGW 403 D 1 
HETATM 11 C C03 PGW . . . F 4 153.93 169.755 159.206 1 44.72 ? C03 PGW 403 D 1 
HETATM 12 C C3 PGW . . . F 4 158.368 172.659 157.965 1 44.72 ? C3 PGW 403 D 1 
HETATM 13 O O03 PGW . . . F 4 154.931 167.861 156.886 1 44.72 ? O03 PGW 403 D 1 
HETATM 14 C C04 PGW . . . F 4 153.483 165.855 159.547 1 44.72 ? C04 PGW 403 D 1 
HETATM 15 C C4 PGW . . . F 4 157.845 172.972 156.539 1 44.72 ? C4 PGW 403 D 1 
HETATM 16 O O04 PGW . . . F 4 157.062 167.852 156.229 1 44.72 ? O04 PGW 403 D 1 
HETATM 17 C C05 PGW . . . F 4 154.114 164.449 159.529 1 44.72 ? C05 PGW 403 D 1 
HETATM 18 C C5 PGW . . . F 4 157.815 171.717 155.616 1 44.72 ? C5 PGW 403 D 1 
HETATM 19 C C06 PGW . . . F 4 156.801 168.398 150.151 1 44.72 ? C06 PGW 403 D 1 
HETATM 20 C C6 PGW . . . F 4 157.755 171.997 154.106 1 44.72 ? C6 PGW 403 D 1 
HETATM 21 C C07 PGW . . . F 4 156.893 168.694 148.645 1 44.72 ? C07 PGW 403 D 1 
HETATM 22 C C7 PGW . . . F 4 157.129 170.775 153.441 1 44.72 ? C7 PGW 403 D 1 
HETATM 23 C C08 PGW . . . F 4 157.842 167.76 147.881 1 44.72 ? C08 PGW 403 D 1 
HETATM 24 C C8 PGW . . . F 4 157.158 170.809 151.921 1 44.72 ? C8 PGW 403 D 1 
HETATM 25 C C09 PGW . . . F 4 158.927 168.509 147.099 1 44.72 ? C09 PGW 403 D 1 
HETATM 26 C C9 PGW . . . F 4 158.287 169.883 151.571 1 44.72 ? C9 PGW 403 D 1 
HETATM 27 C C10 PGW . . . F 4 158.142 168.818 150.797 1 44.72 ? C10 PGW 403 D 1 
HETATM 28 C C11 PGW . . . F 4 159.724 167.568 146.194 1 44.72 ? C11 PGW 403 D 1 
HETATM 29 O O11 PGW . . . F 4 154.08 169.467 160.576 1 44.72 ? O11 PGW 403 D 1 
HETATM 30 C C12 PGW . . . F 4 160.07 168.166 144.836 1 44.72 ? C12 PGW 403 D 1 
HETATM 31 O O12 PGW . . . F 4 154.225 166.74 160.352 1 44.72 ? O12 PGW 403 D 1 
HETATM 32 C C13 PGW . . . F 4 159.937 167.188 143.683 1 44.72 ? C13 PGW 403 D 1 
HETATM 33 O O13 PGW . . . F 4 153.989 167.977 162.604 1 44.72 ? O13 PGW 403 D 1 
HETATM 34 C C14 PGW . . . F 4 161.223 167.184 142.875 1 44.72 ? C14 PGW 403 D 1 
HETATM 35 O O14 PGW . . . F 4 152.047 167.967 161.152 1 44.72 ? O14 PGW 403 D 1 
HETATM 36 C C15 PGW . . . F 4 155.862 161.208 148.251 1 44.72 ? C15 PGW 403 D 1 
HETATM 37 C C16 PGW . . . F 4 155.682 160.208 147.085 1 44.72 ? C16 PGW 403 D 1 
HETATM 38 C C17 PGW . . . F 4 155.743 160.897 145.717 1 44.72 ? C17 PGW 403 D 1 
HETATM 39 C C18 PGW . . . F 4 157.03 161.72 145.562 1 44.72 ? C18 PGW 403 D 1 
HETATM 40 C C19 PGW . . . F 4 155.988 167.436 156.059 1 44.72 ? C19 PGW 403 D 1 
HETATM 41 C C20 PGW . . . F 4 155.723 166.41 154.933 1 44.72 ? C20 PGW 403 D 1 
HETATM 42 C C21 PGW . . . F 4 157 166.131 154.148 1 44.72 ? C21 PGW 403 D 1 
HETATM 43 C C22 PGW . . . F 4 157.025 164.641 153.787 1 44.72 ? C22 PGW 403 D 1 
HETATM 44 C C23 PGW . . . F 4 156.74 164.472 152.308 1 44.72 ? C23 PGW 403 D 1 
HETATM 45 C C24 PGW . . . F 4 156.015 163.16 152.102 1 44.72 ? C24 PGW 403 D 1 
HETATM 46 C C25 PGW . . . F 4 155.891 162.821 150.609 1 44.72 ? C25 PGW 403 D 1 
HETATM 47 C C26 PGW . . . F 4 154.628 161.976 150.419 1 44.72 ? C26 PGW 403 D 1 
HETATM 48 C C27 PGW . . . F 4 154.832 160.872 149.358 1 44.72 ? C27 PGW 403 D 1 
HETATM 49 C C28 PGW . . . F 4 157.315 162.203 144.124 1 44.72 ? C28 PGW 403 D 1 
HETATM 50 C C29 PGW . . . F 4 155.417 163.612 143.094 1 44.72 ? C29 PGW 403 D 1 
HETATM 51 C C30 PGW . . . F 4 156.073 162.229 143.228 1 44.72 ? C30 PGW 403 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           51 
#