data_8J8O
#
_model_server_result.job_id            l0-wyf41uhtloVROfC9cPA 
_model_server_result.datetime_utc      '2024-11-30 18:55:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8j8o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":201}' 
#
_entry.id    8J8O 
#
_exptl.entry_id    8J8O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8J8O 
_cell.length_a            106.046 
_cell.length_b            106.046 
_cell.length_c            101.586 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8J8O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
? hexameric 6 author_defined_assembly 2 
? hexameric 6 author_defined_assembly 3 
? hexameric 6 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,I,J,K,GA 1 1 
A,G,H,I,J,K,GA 1 2 
A,G,H,I,J,K,GA 1 4 
A,G,H,I,J,K,GA 1 6 
A,G,H,I,J,K,GA 1 8 
A,G,H,I,J,K,GA 1 10 
B,L,M,N,O,P,HA 2 1 
B,L,M,N,O,P,HA 2 2 
B,L,M,N,O,P,HA 2 4 
B,L,M,N,O,P,HA 2 7 
B,L,M,N,O,P,HA 2 9 
B,L,M,N,O,P,HA 2 11 
C,D,Q,R,S,T,U,V,W,X,Y,IA,JA 3 1 
C,D,Q,R,S,T,U,V,W,X,Y,IA,JA 3 3 
C,D,Q,R,S,T,U,V,W,X,Y,IA,JA 3 5 
E,F,Z,AA,BA,CA,DA,EA,FA,KA,LA 4 1 
E,F,Z,AA,BA,CA,DA,EA,FA,KA,LA 4 3 
E,F,Z,AA,BA,CA,DA,EA,FA,KA,LA 4 5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 53.023 -91.83853 0 
4 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 106.046 0 0 
6 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 101.586 
7 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
8 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 101.586 
9 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
10 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 101.586 
11 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 L N N 
? 2 Q N N 
? 2 V N N 
? 2 Z N N 
? 2 DA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 200 n n 
C1 C2 GOL sing 201 n n 
C1 H11 GOL sing 202 n n 
C1 H12 GOL sing 203 n n 
O1 HO1 GOL sing 204 n n 
C2 O2 GOL sing 205 n n 
C2 C3 GOL sing 206 n n 
C2 H2 GOL sing 207 n n 
O2 HO2 GOL sing 208 n n 
C3 O3 GOL sing 209 n n 
C3 H31 GOL sing 210 n n 
C3 H32 GOL sing 211 n n 
O3 HO3 GOL sing 212 n n 
#
_atom_sites.entry_id                     8J8O 
_atom_sites.fract_transf_matrix[1][1]    0.00943 
_atom_sites.fract_transf_matrix[1][2]    0.005444 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010889 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009844 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GOL A 1 201 201 GOL GOL . 
H 3 EDO A 1 202 301 EDO EDO . 
I 3 EDO A 1 203 401 EDO EDO . 
J 3 EDO A 1 204 501 EDO EDO . 
K 4 1SY A 1 205 101 1SY 1SY . 
L 2 GOL B 1 201 201 GOL GOL . 
M 3 EDO B 1 202 301 EDO EDO . 
N 3 EDO B 1 203 401 EDO EDO . 
O 3 EDO B 1 204 501 EDO EDO . 
P 4 1SY B 1 205 101 1SY 1SY . 
Q 2 GOL C 1 201 201 GOL GOL . 
R 3 EDO C 1 202 301 EDO EDO . 
S 3 EDO C 1 203 401 EDO EDO . 
T 3 EDO C 1 204 501 EDO EDO . 
U 4 1SY D 1 101 101 1SY 1SY . 
V 2 GOL D 1 102 201 GOL GOL . 
W 3 EDO D 1 103 301 EDO EDO . 
X 3 EDO D 1 104 401 EDO EDO . 
Y 3 EDO D 1 105 501 EDO EDO . 
Z 2 GOL E 1 201 201 GOL GOL . 
AA 3 EDO E 1 202 301 EDO EDO . 
BA 3 EDO E 1 203 501 EDO EDO . 
CA 4 1SY F 1 101 101 1SY 1SY . 
DA 2 GOL F 1 102 201 GOL GOL . 
EA 3 EDO F 1 103 301 EDO EDO . 
FA 3 EDO F 1 104 501 EDO EDO . 
GA 5 HOH A 1 301 148 HOH HOH . 
GA 5 HOH A 2 302 58 HOH HOH . 
GA 5 HOH A 3 303 11 HOH HOH . 
GA 5 HOH A 4 304 19 HOH HOH . 
GA 5 HOH A 5 305 128 HOH HOH . 
GA 5 HOH A 6 306 4 HOH HOH . 
GA 5 HOH A 7 307 154 HOH HOH . 
GA 5 HOH A 8 308 43 HOH HOH . 
GA 5 HOH A 9 309 117 HOH HOH . 
GA 5 HOH A 10 310 36 HOH HOH . 
GA 5 HOH A 11 311 153 HOH HOH . 
GA 5 HOH A 12 312 7 HOH HOH . 
GA 5 HOH A 13 313 42 HOH HOH . 
GA 5 HOH A 14 314 46 HOH HOH . 
GA 5 HOH A 15 315 12 HOH HOH . 
GA 5 HOH A 16 316 30 HOH HOH . 
GA 5 HOH A 17 317 29 HOH HOH . 
GA 5 HOH A 18 318 59 HOH HOH . 
GA 5 HOH A 19 319 77 HOH HOH . 
GA 5 HOH A 20 320 76 HOH HOH . 
GA 5 HOH A 21 321 39 HOH HOH . 
GA 5 HOH A 22 322 140 HOH HOH . 
GA 5 HOH A 23 323 1 HOH HOH . 
GA 5 HOH A 24 324 97 HOH HOH . 
GA 5 HOH A 25 325 64 HOH HOH . 
GA 5 HOH A 26 326 2 HOH HOH . 
GA 5 HOH A 27 327 113 HOH HOH . 
GA 5 HOH A 28 328 28 HOH HOH . 
GA 5 HOH A 29 329 86 HOH HOH . 
GA 5 HOH A 30 330 94 HOH HOH . 
GA 5 HOH A 31 331 134 HOH HOH . 
GA 5 HOH A 32 332 120 HOH HOH . 
GA 5 HOH A 33 333 84 HOH HOH . 
GA 5 HOH A 34 334 112 HOH HOH . 
GA 5 HOH A 35 335 116 HOH HOH . 
GA 5 HOH A 36 336 126 HOH HOH . 
GA 5 HOH A 37 337 99 HOH HOH . 
GA 5 HOH A 38 338 111 HOH HOH . 
HA 5 HOH B 1 301 137 HOH HOH . 
HA 5 HOH B 2 302 122 HOH HOH . 
HA 5 HOH B 3 303 123 HOH HOH . 
HA 5 HOH B 4 304 38 HOH HOH . 
HA 5 HOH B 5 305 56 HOH HOH . 
HA 5 HOH B 6 306 60 HOH HOH . 
HA 5 HOH B 7 307 89 HOH HOH . 
HA 5 HOH B 8 308 63 HOH HOH . 
HA 5 HOH B 9 309 16 HOH HOH . 
HA 5 HOH B 10 310 37 HOH HOH . 
HA 5 HOH B 11 311 83 HOH HOH . 
HA 5 HOH B 12 312 34 HOH HOH . 
HA 5 HOH B 13 313 102 HOH HOH . 
HA 5 HOH B 14 314 105 HOH HOH . 
HA 5 HOH B 15 315 70 HOH HOH . 
HA 5 HOH B 16 316 52 HOH HOH . 
HA 5 HOH B 17 317 32 HOH HOH . 
HA 5 HOH B 18 318 57 HOH HOH . 
HA 5 HOH B 19 319 8 HOH HOH . 
HA 5 HOH B 20 320 15 HOH HOH . 
HA 5 HOH B 21 321 6 HOH HOH . 
HA 5 HOH B 22 322 81 HOH HOH . 
HA 5 HOH B 23 323 71 HOH HOH . 
HA 5 HOH B 24 324 22 HOH HOH . 
HA 5 HOH B 25 325 66 HOH HOH . 
HA 5 HOH B 26 326 74 HOH HOH . 
HA 5 HOH B 27 327 3 HOH HOH . 
HA 5 HOH B 28 328 139 HOH HOH . 
HA 5 HOH B 29 329 61 HOH HOH . 
HA 5 HOH B 30 330 10 HOH HOH . 
HA 5 HOH B 31 331 48 HOH HOH . 
HA 5 HOH B 32 332 125 HOH HOH . 
HA 5 HOH B 33 333 109 HOH HOH . 
HA 5 HOH B 34 334 75 HOH HOH . 
HA 5 HOH B 35 335 135 HOH HOH . 
HA 5 HOH B 36 336 146 HOH HOH . 
HA 5 HOH B 37 337 136 HOH HOH . 
HA 5 HOH B 38 338 65 HOH HOH . 
HA 5 HOH B 39 339 68 HOH HOH . 
HA 5 HOH B 40 340 149 HOH HOH . 
HA 5 HOH B 41 341 131 HOH HOH . 
HA 5 HOH B 42 342 121 HOH HOH . 
HA 5 HOH B 43 343 138 HOH HOH . 
HA 5 HOH B 44 344 155 HOH HOH . 
HA 5 HOH B 45 345 45 HOH HOH . 
HA 5 HOH B 46 346 132 HOH HOH . 
IA 5 HOH C 1 301 107 HOH HOH . 
IA 5 HOH C 2 302 33 HOH HOH . 
IA 5 HOH C 3 303 18 HOH HOH . 
IA 5 HOH C 4 304 26 HOH HOH . 
IA 5 HOH C 5 305 78 HOH HOH . 
IA 5 HOH C 6 306 35 HOH HOH . 
IA 5 HOH C 7 307 104 HOH HOH . 
IA 5 HOH C 8 308 41 HOH HOH . 
IA 5 HOH C 9 309 24 HOH HOH . 
IA 5 HOH C 10 310 93 HOH HOH . 
IA 5 HOH C 11 311 92 HOH HOH . 
IA 5 HOH C 12 312 88 HOH HOH . 
IA 5 HOH C 13 313 150 HOH HOH . 
IA 5 HOH C 14 314 5 HOH HOH . 
IA 5 HOH C 15 315 25 HOH HOH . 
IA 5 HOH C 16 316 54 HOH HOH . 
IA 5 HOH C 17 317 55 HOH HOH . 
IA 5 HOH C 18 318 87 HOH HOH . 
IA 5 HOH C 19 319 152 HOH HOH . 
IA 5 HOH C 20 320 130 HOH HOH . 
IA 5 HOH C 21 321 67 HOH HOH . 
IA 5 HOH C 22 322 144 HOH HOH . 
IA 5 HOH C 23 323 133 HOH HOH . 
JA 5 HOH D 1 201 101 HOH HOH . 
JA 5 HOH D 2 202 40 HOH HOH . 
JA 5 HOH D 3 203 23 HOH HOH . 
JA 5 HOH D 4 204 90 HOH HOH . 
JA 5 HOH D 5 205 13 HOH HOH . 
JA 5 HOH D 6 206 73 HOH HOH . 
JA 5 HOH D 7 207 118 HOH HOH . 
JA 5 HOH D 8 208 108 HOH HOH . 
JA 5 HOH D 9 209 80 HOH HOH . 
JA 5 HOH D 10 210 27 HOH HOH . 
JA 5 HOH D 11 211 103 HOH HOH . 
JA 5 HOH D 12 212 50 HOH HOH . 
JA 5 HOH D 13 213 51 HOH HOH . 
JA 5 HOH D 14 214 31 HOH HOH . 
JA 5 HOH D 15 215 72 HOH HOH . 
JA 5 HOH D 16 216 9 HOH HOH . 
JA 5 HOH D 17 217 85 HOH HOH . 
JA 5 HOH D 18 218 91 HOH HOH . 
JA 5 HOH D 19 219 143 HOH HOH . 
JA 5 HOH D 20 220 69 HOH HOH . 
JA 5 HOH D 21 221 96 HOH HOH . 
JA 5 HOH D 22 222 53 HOH HOH . 
JA 5 HOH D 23 223 100 HOH HOH . 
JA 5 HOH D 24 224 98 HOH HOH . 
JA 5 HOH D 25 225 44 HOH HOH . 
JA 5 HOH D 26 226 82 HOH HOH . 
KA 5 HOH E 1 301 62 HOH HOH . 
KA 5 HOH E 2 302 47 HOH HOH . 
KA 5 HOH E 3 303 145 HOH HOH . 
KA 5 HOH E 4 304 14 HOH HOH . 
KA 5 HOH E 5 305 141 HOH HOH . 
KA 5 HOH E 6 306 124 HOH HOH . 
KA 5 HOH E 7 307 142 HOH HOH . 
LA 5 HOH F 1 201 114 HOH HOH . 
LA 5 HOH F 2 202 119 HOH HOH . 
LA 5 HOH F 3 203 17 HOH HOH . 
LA 5 HOH F 4 204 95 HOH HOH . 
LA 5 HOH F 5 205 106 HOH HOH . 
LA 5 HOH F 6 206 147 HOH HOH . 
LA 5 HOH F 7 207 21 HOH HOH . 
LA 5 HOH F 8 208 79 HOH HOH . 
LA 5 HOH F 9 209 49 HOH HOH . 
LA 5 HOH F 10 210 151 HOH HOH . 
LA 5 HOH F 11 211 110 HOH HOH . 
LA 5 HOH F 12 212 129 HOH HOH . 
LA 5 HOH F 13 213 115 HOH HOH . 
LA 5 HOH F 14 214 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . Z 2 52.704 -26.686 -13.488 1 62.17 ? C1 GOL 201 E 1 
HETATM 2 O O1 GOL . . . Z 2 52.715 -25.735 -14.561 1 64.31 ? O1 GOL 201 E 1 
HETATM 3 C C2 GOL . . . Z 2 52.442 -28.09 -14.027 1 73.82 ? C2 GOL 201 E 1 
HETATM 4 O O2 GOL . . . Z 2 52.334 -29.004 -12.927 1 67.81 ? O2 GOL 201 E 1 
HETATM 5 C C3 GOL . . . Z 2 51.158 -28.095 -14.86 1 67.61 ? C3 GOL 201 E 1 
HETATM 6 O O3 GOL . . . Z 2 50.121 -27.368 -14.188 1 52.07 ? O3 GOL 201 E 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#