data_8J9X # _model_server_result.job_id C0jNlz-ZTvTB5VmXATqt0g _model_server_result.datetime_utc '2025-03-11 11:10:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8j9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":101}' # _entry.id 8J9X # _exptl.entry_id 8J9X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 393.459 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8J9X _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8J9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 541 A ASP 541 1_555 G MG MG . A MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 B OD2 ASP 539 B ASP 539 1_555 H MG MG . B MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc3 B OD2 ASP 541 B ASP 541 1_555 H MG MG . B MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? hydrog 'DA-DC MISPAIR' hydrog1 C N6 DA 2 C DA 2 1_555 E N3 DC 15 D DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N1 DG 8 C DG 8 1_555 E N3 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C N2 DG 8 C DG 8 1_555 E O2 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C O6 DG 8 C DG 8 1_555 E N4 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N1 DG 11 C DG 11 1_555 E N3 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N2 DG 11 C DG 11 1_555 E O2 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C O6 DG 11 C DG 11 1_555 E N4 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N1 DG 12 C DG 12 1_555 E N3 DC 6 D DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N2 DG 12 C DG 12 1_555 E O2 DC 6 D DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C O6 DG 12 C DG 12 1_555 E N4 DC 6 D DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N1 DG 12 C DG 12 1_555 E N3 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N2 DG 12 C DG 12 1_555 E O2 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C O6 DG 12 C DG 12 1_555 E N4 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog14 C O2 DC 13 C DC 13 1_555 E N2 DG 5 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DC MISPAIR' hydrog15 D N6 DA 2 E DA 2 1_555 F N3 DC 15 F DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog16 D N1 DG 8 E DG 8 1_555 F N1 DA 9 F DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog17 D O6 DG 8 E DG 8 1_555 F N6 DA 9 F DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 D N1 DG 8 E DG 8 1_555 F N3 DC 10 F DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 D N2 DG 8 E DG 8 1_555 F O2 DC 10 F DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 D O6 DG 8 E DG 8 1_555 F N4 DC 10 F DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog21 D O4 DT 9 E DT 9 1_555 F N6 DA 9 F DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 D N1 DG 11 E DG 11 1_555 F N3 DC 7 F DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 D N2 DG 11 E DG 11 1_555 F O2 DC 7 F DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 D O6 DG 11 E DG 11 1_555 F N4 DC 7 F DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 D N1 DG 12 E DG 12 1_555 F N3 DC 6 F DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 D N2 DG 12 E DG 12 1_555 F O2 DC 6 F DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 D O6 DG 12 E DG 12 1_555 F N4 DC 6 F DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog28 D O2 DC 13 E DC 13 1_555 F N2 DG 5 F DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C21 H19 N3 O3 S' _chem_comp.formula_weight 393.459 _chem_comp.id ASW _chem_comp.mon_nstd_flag . _chem_comp.name N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Amsacrine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 ASW sing 70 n n O2 C3 ASW sing 71 n n O10 S7 ASW doub 72 n n C4 C3 ASW doub 73 n y C4 C5 ASW sing 74 n y C8 S7 ASW sing 75 n n C3 C13 ASW sing 76 n y S7 N6 ASW sing 77 n n S7 O9 ASW doub 78 n n N6 C5 ASW sing 79 n n C5 C11 ASW doub 80 n y C26 C27 ASW doub 81 n y C26 C25 ASW sing 82 n y C27 C28 ASW sing 83 n y C13 N14 ASW sing 84 n n C13 C12 ASW doub 85 n y N14 C15 ASW sing 86 n n C25 C24 ASW doub 87 n y C11 C12 ASW sing 88 n y C28 C15 ASW doub 89 n y C28 C23 ASW sing 90 n y C15 C16 ASW sing 91 n y C24 C23 ASW sing 92 n y C23 N22 ASW doub 93 n y C16 C17 ASW doub 94 n y C16 C21 ASW sing 95 n y C17 C18 ASW sing 96 n y N22 C21 ASW sing 97 n y C21 C20 ASW doub 98 n y C18 C19 ASW doub 99 n y C20 C19 ASW sing 100 n y C1 H1 ASW sing 101 n n C1 H2 ASW sing 102 n n C1 H3 ASW sing 103 n n C4 H4 ASW sing 104 n n N6 H5 ASW sing 105 n n C8 H6 ASW sing 106 n n C8 H7 ASW sing 107 n n C8 H8 ASW sing 108 n n C11 H9 ASW sing 109 n n C12 H10 ASW sing 110 n n N14 H11 ASW sing 111 n n C17 H12 ASW sing 112 n n C18 H13 ASW sing 113 n n C19 H14 ASW sing 114 n n C20 H15 ASW sing 115 n n C24 H16 ASW sing 116 n n C25 H17 ASW sing 117 n n C26 H18 ASW sing 118 n n C27 H19 ASW sing 119 n n # _atom_sites.entry_id 8J9X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MG A 1 1301 1301 MG MG . H 4 MG B 1 1201 1302 MG MG . I 5 ASW D 1 1301 1301 ASW ASW . J 5 ASW F 1 101 1302 ASW ASW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ASW . . . J 5 152.237 165.442 147.219 1 148 ? C1 ASW 101 F 1 HETATM 2 O O2 ASW . . . J 5 153.202 165.735 148.224 1 148 ? O2 ASW 101 F 1 HETATM 3 C C3 ASW . . . J 5 154.506 165.443 147.957 1 148 ? C3 ASW 101 F 1 HETATM 4 C C4 ASW . . . J 5 154.986 164.99 146.744 1 148 ? C4 ASW 101 F 1 HETATM 5 C C5 ASW . . . J 5 156.341 164.725 146.582 1 148 ? C5 ASW 101 F 1 HETATM 6 N N6 ASW . . . J 5 156.832 164.256 145.33 1 148 ? N6 ASW 101 F 1 HETATM 7 S S7 ASW . . . J 5 156.581 164.922 143.863 1 148 ? S7 ASW 101 F 1 HETATM 8 C C8 ASW . . . J 5 155.797 163.699 142.887 1 148 ? C8 ASW 101 F 1 HETATM 9 O O9 ASW . . . J 5 155.675 166.011 144.033 1 148 ? O9 ASW 101 F 1 HETATM 10 O O10 ASW . . . J 5 157.867 165.187 143.303 1 148 ? O10 ASW 101 F 1 HETATM 11 C C11 ASW . . . J 5 157.219 164.905 147.634 1 148 ? C11 ASW 101 F 1 HETATM 12 C C12 ASW . . . J 5 156.756 165.351 148.85 1 148 ? C12 ASW 101 F 1 HETATM 13 C C13 ASW . . . J 5 155.4 165.627 149.016 1 148 ? C13 ASW 101 F 1 HETATM 14 N N14 ASW . . . J 5 154.868 166.088 150.234 1 148 ? N14 ASW 101 F 1 HETATM 15 C C15 ASW . . . J 5 155.459 166.88 151.231 1 148 ? C15 ASW 101 F 1 HETATM 16 C C16 ASW . . . J 5 155.315 166.517 152.579 1 148 ? C16 ASW 101 F 1 HETATM 17 C C17 ASW . . . J 5 154.602 165.37 153.008 1 148 ? C17 ASW 101 F 1 HETATM 18 C C18 ASW . . . J 5 154.495 165.055 154.328 1 148 ? C18 ASW 101 F 1 HETATM 19 C C19 ASW . . . J 5 155.091 165.873 155.298 1 148 ? C19 ASW 101 F 1 HETATM 20 C C20 ASW . . . J 5 155.786 166.987 154.935 1 148 ? C20 ASW 101 F 1 HETATM 21 C C21 ASW . . . J 5 155.923 167.349 153.565 1 148 ? C21 ASW 101 F 1 HETATM 22 N N22 ASW . . . J 5 156.62 168.458 153.264 1 148 ? N22 ASW 101 F 1 HETATM 23 C C23 ASW . . . J 5 156.747 168.797 151.968 1 148 ? C23 ASW 101 F 1 HETATM 24 C C24 ASW . . . J 5 157.485 169.972 151.65 1 148 ? C24 ASW 101 F 1 HETATM 25 C C25 ASW . . . J 5 157.65 170.367 150.357 1 148 ? C25 ASW 101 F 1 HETATM 26 C C26 ASW . . . J 5 157.094 169.625 149.309 1 148 ? C26 ASW 101 F 1 HETATM 27 C C27 ASW . . . J 5 156.38 168.497 149.573 1 148 ? C27 ASW 101 F 1 HETATM 28 C C28 ASW . . . J 5 156.182 168.038 150.9 1 148 ? C28 ASW 101 F 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 505 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #