data_8JBT
#
_model_server_result.job_id            CHzDrxJfUUUWZ6lgC1SsLg 
_model_server_result.datetime_utc      '2024-11-15 04:52:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jbt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":304}' 
#
_entry.id    8JBT 
#
_exptl.entry_id    8JBT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8JBT 
_cell.length_a            123.485 
_cell.length_b            123.485 
_cell.length_c            73.105 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JBT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 204 A HIS 122 1_555 C CO B12 . A B12 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc2 C CO B12 . A B12 301 1_555 J O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc3 B NE2 HIS 204 B HIS 122 1_555 G CO B12 . B B12 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc4 G CO B12 . B B12 302 1_555 K O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 319 n n 
C1 C2 GOL sing 320 n n 
C1 H11 GOL sing 321 n n 
C1 H12 GOL sing 322 n n 
O1 HO1 GOL sing 323 n n 
C2 O2 GOL sing 324 n n 
C2 C3 GOL sing 325 n n 
C2 H2 GOL sing 326 n n 
O2 HO2 GOL sing 327 n n 
C3 O3 GOL sing 328 n n 
C3 H31 GOL sing 329 n n 
C3 H32 GOL sing 330 n n 
O3 HO3 GOL sing 331 n n 
#
_atom_sites.entry_id                     8JBT 
_atom_sites.fract_transf_matrix[1][1]    0.008098 
_atom_sites.fract_transf_matrix[1][2]    0.004675 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009351 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013679 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 B12 A 1 301 301 B12 B12 . 
D 3 TRS A 1 302 302 TRS TRS . 
E 4 P6G A 1 303 303 P6G P6G . 
F 5 PG4 B 1 301 303 PG4 PG4 . 
G 2 B12 B 1 302 301 B12 B12 . 
H 3 TRS B 1 303 304 TRS TRS . 
I 6 GOL B 1 304 305 GOL GOL . 
J 7 HOH A 1 401 41 HOH HOH . 
J 7 HOH A 2 402 5 HOH HOH . 
J 7 HOH A 3 403 15 HOH HOH . 
J 7 HOH A 4 404 44 HOH HOH . 
J 7 HOH A 5 405 21 HOH HOH . 
J 7 HOH A 6 406 12 HOH HOH . 
J 7 HOH A 7 407 37 HOH HOH . 
J 7 HOH A 8 408 22 HOH HOH . 
J 7 HOH A 9 409 14 HOH HOH . 
J 7 HOH A 10 410 62 HOH HOH . 
J 7 HOH A 11 411 2 HOH HOH . 
J 7 HOH A 12 412 19 HOH HOH . 
J 7 HOH A 13 413 60 HOH HOH . 
J 7 HOH A 14 414 48 HOH HOH . 
J 7 HOH A 15 415 3 HOH HOH . 
J 7 HOH A 16 416 32 HOH HOH . 
J 7 HOH A 17 417 49 HOH HOH . 
J 7 HOH A 18 418 13 HOH HOH . 
J 7 HOH A 19 419 7 HOH HOH . 
J 7 HOH A 20 420 27 HOH HOH . 
J 7 HOH A 21 421 31 HOH HOH . 
J 7 HOH A 22 422 10 HOH HOH . 
J 7 HOH A 23 423 63 HOH HOH . 
J 7 HOH A 24 424 58 HOH HOH . 
J 7 HOH A 25 425 69 HOH HOH . 
J 7 HOH A 26 426 50 HOH HOH . 
K 7 HOH B 1 401 70 HOH HOH . 
K 7 HOH B 2 402 16 HOH HOH . 
K 7 HOH B 3 403 74 HOH HOH . 
K 7 HOH B 4 404 54 HOH HOH . 
K 7 HOH B 5 405 68 HOH HOH . 
K 7 HOH B 6 406 33 HOH HOH . 
K 7 HOH B 7 407 17 HOH HOH . 
K 7 HOH B 8 408 6 HOH HOH . 
K 7 HOH B 9 409 66 HOH HOH . 
K 7 HOH B 10 410 8 HOH HOH . 
K 7 HOH B 11 411 24 HOH HOH . 
K 7 HOH B 12 412 45 HOH HOH . 
K 7 HOH B 13 413 25 HOH HOH . 
K 7 HOH B 14 414 34 HOH HOH . 
K 7 HOH B 15 415 23 HOH HOH . 
K 7 HOH B 16 416 57 HOH HOH . 
K 7 HOH B 17 417 9 HOH HOH . 
K 7 HOH B 18 418 20 HOH HOH . 
K 7 HOH B 19 419 38 HOH HOH . 
K 7 HOH B 20 420 42 HOH HOH . 
K 7 HOH B 21 421 35 HOH HOH . 
K 7 HOH B 22 422 36 HOH HOH . 
K 7 HOH B 23 423 18 HOH HOH . 
K 7 HOH B 24 424 39 HOH HOH . 
K 7 HOH B 25 425 56 HOH HOH . 
K 7 HOH B 26 426 43 HOH HOH . 
K 7 HOH B 27 427 4 HOH HOH . 
K 7 HOH B 28 428 1 HOH HOH . 
K 7 HOH B 29 429 64 HOH HOH . 
K 7 HOH B 30 430 55 HOH HOH . 
K 7 HOH B 31 431 73 HOH HOH . 
K 7 HOH B 32 432 11 HOH HOH . 
K 7 HOH B 33 433 28 HOH HOH . 
K 7 HOH B 34 434 29 HOH HOH . 
K 7 HOH B 35 435 59 HOH HOH . 
K 7 HOH B 36 436 30 HOH HOH . 
K 7 HOH B 37 437 65 HOH HOH . 
K 7 HOH B 38 438 67 HOH HOH . 
K 7 HOH B 39 439 76 HOH HOH . 
K 7 HOH B 40 440 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 6 22.416 -57.95 -2.504 1 73.18 ? C1 GOL 304 B 1 
HETATM 2 O O1 GOL . . . I 6 22.733 -58.61 -3.728 1 68.34 ? O1 GOL 304 B 1 
HETATM 3 C C2 GOL . . . I 6 21.058 -57.28 -2.559 1 67.01 ? C2 GOL 304 B 1 
HETATM 4 O O2 GOL . . . I 6 20.231 -57.946 -3.513 1 59.78 ? O2 GOL 304 B 1 
HETATM 5 C C3 GOL . . . I 6 20.352 -57.231 -1.219 1 61.03 ? C3 GOL 304 B 1 
HETATM 6 O O3 GOL . . . I 6 20.83 -56.162 -0.405 1 51.89 ? O3 GOL 304 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#