data_8JCR # _model_server_result.job_id pMYV7TiHLKl5Zq0-OU1qzA _model_server_result.datetime_utc '2024-11-28 18:29:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jcr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8JCR # _exptl.entry_id 8JCR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JCR _cell.length_a 68.675 _cell.length_b 120.98 _cell.length_c 61.024 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JCR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 147 1_555 A SG CYS 65 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 58 A CYS 181 1_555 A SG CYS 97 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 151 A CYS 274 1_555 A SG CYS 202 A CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? covale ? covale1 A SG CYS 27 A CYS 150 1_555 C C2 E64 . A E64 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? covale ? covale2 A C GLY 200 A GLY 323 1_555 A N CME 201 A CME 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C CME 201 A CME 324 1_555 A N CYS 202 A CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 204 n n C1 C2 GOL sing 205 n n C1 H11 GOL sing 206 n n C1 H12 GOL sing 207 n n O1 HO1 GOL sing 208 n n C2 O2 GOL sing 209 n n C2 C3 GOL sing 210 n n C2 H2 GOL sing 211 n n O2 HO2 GOL sing 212 n n C3 O3 GOL sing 213 n n C3 H31 GOL sing 214 n n C3 H32 GOL sing 215 n n O3 HO3 GOL sing 216 n n # _atom_sites.entry_id 8JCR _atom_sites.fract_transf_matrix[1][1] 0.014561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 399 GOL GOL . C 3 E64 A 1 402 1 E64 E64 . D 4 HOH A 1 501 102 HOH HOH . D 4 HOH A 2 502 177 HOH HOH . D 4 HOH A 3 503 61 HOH HOH . D 4 HOH A 4 504 180 HOH HOH . D 4 HOH A 5 505 81 HOH HOH . D 4 HOH A 6 506 166 HOH HOH . D 4 HOH A 7 507 173 HOH HOH . D 4 HOH A 8 508 133 HOH HOH . D 4 HOH A 9 509 146 HOH HOH . D 4 HOH A 10 510 34 HOH HOH . D 4 HOH A 11 511 4 HOH HOH . D 4 HOH A 12 512 114 HOH HOH . D 4 HOH A 13 513 95 HOH HOH . D 4 HOH A 14 514 124 HOH HOH . D 4 HOH A 15 515 123 HOH HOH . D 4 HOH A 16 516 101 HOH HOH . D 4 HOH A 17 517 128 HOH HOH . D 4 HOH A 18 518 135 HOH HOH . D 4 HOH A 19 519 45 HOH HOH . D 4 HOH A 20 520 147 HOH HOH . D 4 HOH A 21 521 165 HOH HOH . D 4 HOH A 22 522 5 HOH HOH . D 4 HOH A 23 523 85 HOH HOH . D 4 HOH A 24 524 24 HOH HOH . D 4 HOH A 25 525 75 HOH HOH . D 4 HOH A 26 526 8 HOH HOH . D 4 HOH A 27 527 158 HOH HOH . D 4 HOH A 28 528 168 HOH HOH . D 4 HOH A 29 529 30 HOH HOH . D 4 HOH A 30 530 115 HOH HOH . D 4 HOH A 31 531 131 HOH HOH . D 4 HOH A 32 532 91 HOH HOH . D 4 HOH A 33 533 71 HOH HOH . D 4 HOH A 34 534 56 HOH HOH . D 4 HOH A 35 535 157 HOH HOH . D 4 HOH A 36 536 29 HOH HOH . D 4 HOH A 37 537 41 HOH HOH . D 4 HOH A 38 538 40 HOH HOH . D 4 HOH A 39 539 37 HOH HOH . D 4 HOH A 40 540 32 HOH HOH . D 4 HOH A 41 541 132 HOH HOH . D 4 HOH A 42 542 99 HOH HOH . D 4 HOH A 43 543 26 HOH HOH . D 4 HOH A 44 544 149 HOH HOH . D 4 HOH A 45 545 127 HOH HOH . D 4 HOH A 46 546 122 HOH HOH . D 4 HOH A 47 547 21 HOH HOH . D 4 HOH A 48 548 185 HOH HOH . D 4 HOH A 49 549 78 HOH HOH . D 4 HOH A 50 550 169 HOH HOH . D 4 HOH A 51 551 86 HOH HOH . D 4 HOH A 52 552 100 HOH HOH . D 4 HOH A 53 553 36 HOH HOH . D 4 HOH A 54 554 52 HOH HOH . D 4 HOH A 55 555 14 HOH HOH . D 4 HOH A 56 556 96 HOH HOH . D 4 HOH A 57 557 126 HOH HOH . D 4 HOH A 58 558 12 HOH HOH . D 4 HOH A 59 559 134 HOH HOH . D 4 HOH A 60 560 33 HOH HOH . D 4 HOH A 61 561 7 HOH HOH . D 4 HOH A 62 562 119 HOH HOH . D 4 HOH A 63 563 70 HOH HOH . D 4 HOH A 64 564 156 HOH HOH . D 4 HOH A 65 565 187 HOH HOH . D 4 HOH A 66 566 90 HOH HOH . D 4 HOH A 67 567 13 HOH HOH . D 4 HOH A 68 568 64 HOH HOH . D 4 HOH A 69 569 1 HOH HOH . D 4 HOH A 70 570 108 HOH HOH . D 4 HOH A 71 571 44 HOH HOH . D 4 HOH A 72 572 58 HOH HOH . D 4 HOH A 73 573 42 HOH HOH . D 4 HOH A 74 574 50 HOH HOH . D 4 HOH A 75 575 10 HOH HOH . D 4 HOH A 76 576 17 HOH HOH . D 4 HOH A 77 577 142 HOH HOH . D 4 HOH A 78 578 117 HOH HOH . D 4 HOH A 79 579 11 HOH HOH . D 4 HOH A 80 580 121 HOH HOH . D 4 HOH A 81 581 19 HOH HOH . D 4 HOH A 82 582 155 HOH HOH . D 4 HOH A 83 583 186 HOH HOH . D 4 HOH A 84 584 182 HOH HOH . D 4 HOH A 85 585 9 HOH HOH . D 4 HOH A 86 586 15 HOH HOH . D 4 HOH A 87 587 54 HOH HOH . D 4 HOH A 88 588 28 HOH HOH . D 4 HOH A 89 589 62 HOH HOH . D 4 HOH A 90 590 43 HOH HOH . D 4 HOH A 91 591 159 HOH HOH . D 4 HOH A 92 592 27 HOH HOH . D 4 HOH A 93 593 163 HOH HOH . D 4 HOH A 94 594 148 HOH HOH . D 4 HOH A 95 595 59 HOH HOH . D 4 HOH A 96 596 46 HOH HOH . D 4 HOH A 97 597 39 HOH HOH . D 4 HOH A 98 598 92 HOH HOH . D 4 HOH A 99 599 35 HOH HOH . D 4 HOH A 100 600 74 HOH HOH . D 4 HOH A 101 601 38 HOH HOH . D 4 HOH A 102 602 140 HOH HOH . D 4 HOH A 103 603 97 HOH HOH . D 4 HOH A 104 604 31 HOH HOH . D 4 HOH A 105 605 129 HOH HOH . D 4 HOH A 106 606 67 HOH HOH . D 4 HOH A 107 607 170 HOH HOH . D 4 HOH A 108 608 6 HOH HOH . D 4 HOH A 109 609 16 HOH HOH . D 4 HOH A 110 610 137 HOH HOH . D 4 HOH A 111 611 139 HOH HOH . D 4 HOH A 112 612 136 HOH HOH . D 4 HOH A 113 613 3 HOH HOH . D 4 HOH A 114 614 77 HOH HOH . D 4 HOH A 115 615 84 HOH HOH . D 4 HOH A 116 616 25 HOH HOH . D 4 HOH A 117 617 150 HOH HOH . D 4 HOH A 118 618 184 HOH HOH . D 4 HOH A 119 619 87 HOH HOH . D 4 HOH A 120 620 82 HOH HOH . D 4 HOH A 121 621 145 HOH HOH . D 4 HOH A 122 622 79 HOH HOH . D 4 HOH A 123 623 2 HOH HOH . D 4 HOH A 124 624 120 HOH HOH . D 4 HOH A 125 625 69 HOH HOH . D 4 HOH A 126 626 53 HOH HOH . D 4 HOH A 127 627 93 HOH HOH . D 4 HOH A 128 628 60 HOH HOH . D 4 HOH A 129 629 22 HOH HOH . D 4 HOH A 130 630 118 HOH HOH . D 4 HOH A 131 631 153 HOH HOH . D 4 HOH A 132 632 160 HOH HOH . D 4 HOH A 133 633 76 HOH HOH . D 4 HOH A 134 634 73 HOH HOH . D 4 HOH A 135 635 55 HOH HOH . D 4 HOH A 136 636 116 HOH HOH . D 4 HOH A 137 637 49 HOH HOH . D 4 HOH A 138 638 141 HOH HOH . D 4 HOH A 139 639 172 HOH HOH . D 4 HOH A 140 640 179 HOH HOH . D 4 HOH A 141 641 23 HOH HOH . D 4 HOH A 142 642 175 HOH HOH . D 4 HOH A 143 643 103 HOH HOH . D 4 HOH A 144 644 68 HOH HOH . D 4 HOH A 145 645 57 HOH HOH . D 4 HOH A 146 646 18 HOH HOH . D 4 HOH A 147 647 130 HOH HOH . D 4 HOH A 148 648 63 HOH HOH . D 4 HOH A 149 649 48 HOH HOH . D 4 HOH A 150 650 109 HOH HOH . D 4 HOH A 151 651 65 HOH HOH . D 4 HOH A 152 652 161 HOH HOH . D 4 HOH A 153 653 154 HOH HOH . D 4 HOH A 154 654 47 HOH HOH . D 4 HOH A 155 655 138 HOH HOH . D 4 HOH A 156 656 125 HOH HOH . D 4 HOH A 157 657 174 HOH HOH . D 4 HOH A 158 658 20 HOH HOH . D 4 HOH A 159 659 143 HOH HOH . D 4 HOH A 160 660 176 HOH HOH . D 4 HOH A 161 661 110 HOH HOH . D 4 HOH A 162 662 183 HOH HOH . D 4 HOH A 163 663 66 HOH HOH . D 4 HOH A 164 664 94 HOH HOH . D 4 HOH A 165 665 144 HOH HOH . D 4 HOH A 166 666 98 HOH HOH . D 4 HOH A 167 667 162 HOH HOH . D 4 HOH A 168 668 104 HOH HOH . D 4 HOH A 169 669 181 HOH HOH . D 4 HOH A 170 670 167 HOH HOH . D 4 HOH A 171 671 191 HOH HOH . D 4 HOH A 172 672 189 HOH HOH . D 4 HOH A 173 673 188 HOH HOH . D 4 HOH A 174 674 164 HOH HOH . D 4 HOH A 175 675 88 HOH HOH . D 4 HOH A 176 676 111 HOH HOH . D 4 HOH A 177 677 106 HOH HOH . D 4 HOH A 178 678 193 HOH HOH . D 4 HOH A 179 679 89 HOH HOH . D 4 HOH A 180 680 105 HOH HOH . D 4 HOH A 181 681 113 HOH HOH . D 4 HOH A 182 682 171 HOH HOH . D 4 HOH A 183 683 178 HOH HOH . D 4 HOH A 184 684 51 HOH HOH . D 4 HOH A 185 685 83 HOH HOH . D 4 HOH A 186 686 151 HOH HOH . D 4 HOH A 187 687 192 HOH HOH . D 4 HOH A 188 688 112 HOH HOH . D 4 HOH A 189 689 152 HOH HOH . D 4 HOH A 190 690 72 HOH HOH . D 4 HOH A 191 691 80 HOH HOH . D 4 HOH A 192 692 107 HOH HOH . D 4 HOH A 193 693 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 14.285 29.747 -10.507 1 41.81 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 15.536 30.172 -9.967 1 35.82 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 14.021 30.338 -11.878 1 47.42 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 15.107 30.063 -12.744 1 49.79 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 12.761 29.725 -12.449 1 44.57 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 12.262 30.617 -13.416 1 39.99 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #