data_8JCR # _model_server_result.job_id 1axIdE4oPwZhb9PSG5U6kA _model_server_result.datetime_utc '2024-11-25 01:47:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jcr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8JCR # _exptl.entry_id 8JCR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.429 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JCR _cell.length_a 68.675 _cell.length_b 120.98 _cell.length_c 61.024 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JCR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 147 1_555 A SG CYS 65 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 58 A CYS 181 1_555 A SG CYS 97 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 151 A CYS 274 1_555 A SG CYS 202 A CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? covale ? covale1 A SG CYS 27 A CYS 150 1_555 C C2 E64 . A E64 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? covale ? covale2 A C GLY 200 A GLY 323 1_555 A N CME 201 A CME 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C CME 201 A CME 324 1_555 A N CYS 202 A CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C15 H30 N5 O5 1' _chem_comp.formula_weight 360.429 _chem_comp.id E64 _chem_comp.mon_nstd_flag . _chem_comp.name N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 E64 doub 104 n n C1 O2 E64 sing 105 n n C1 C2 E64 sing 106 n n O2 HO2 E64 sing 107 n n C2 C3 E64 sing 108 n n C2 H21 E64 sing 109 n n C2 H22 E64 sing 110 n n C3 O3 E64 sing 111 n n C3 C4 E64 sing 112 n n C3 H3 E64 sing 113 n n O3 HO3 E64 sing 114 n n C4 O4 E64 doub 115 n n C4 N1 E64 sing 116 n n N1 C6 E64 sing 117 n n N1 HN1 E64 sing 118 n n C6 C7 E64 sing 119 n n C6 C11 E64 sing 120 n n C6 H6 E64 sing 121 n n C7 C8 E64 sing 122 n n C7 H71 E64 sing 123 n n C7 H72 E64 sing 124 n n C8 C9 E64 sing 125 n n C8 C10 E64 sing 126 n n C8 H8 E64 sing 127 n n C9 H91 E64 sing 128 n n C9 H92 E64 sing 129 n n C9 H93 E64 sing 130 n n C10 H101 E64 sing 131 n n C10 H102 E64 sing 132 n n C10 H103 E64 sing 133 n n C11 O5 E64 doub 134 n n C11 N2 E64 sing 135 n n N2 C12 E64 sing 136 n n N2 HN2 E64 sing 137 n n C12 C13 E64 sing 138 n n C12 H121 E64 sing 139 n n C12 H122 E64 sing 140 n n C13 C14 E64 sing 141 n n C13 H131 E64 sing 142 n n C13 H132 E64 sing 143 n n C14 C15 E64 sing 144 n n C14 H141 E64 sing 145 n n C14 H142 E64 sing 146 n n C15 N3 E64 sing 147 n n C15 H151 E64 sing 148 n n C15 H152 E64 sing 149 n n N3 C16 E64 sing 150 n n N3 HN3 E64 sing 151 n n C16 N4 E64 sing 152 n n C16 N5 E64 doub 153 n n N4 HN41 E64 sing 154 n n N4 HN42 E64 sing 155 n n N5 HN51 E64 sing 156 n n N5 HN52 E64 sing 157 n n # _atom_sites.entry_id 8JCR _atom_sites.fract_transf_matrix[1][1] 0.014561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 399 GOL GOL . C 3 E64 A 1 402 1 E64 E64 . D 4 HOH A 1 501 102 HOH HOH . D 4 HOH A 2 502 177 HOH HOH . D 4 HOH A 3 503 61 HOH HOH . D 4 HOH A 4 504 180 HOH HOH . D 4 HOH A 5 505 81 HOH HOH . D 4 HOH A 6 506 166 HOH HOH . D 4 HOH A 7 507 173 HOH HOH . D 4 HOH A 8 508 133 HOH HOH . D 4 HOH A 9 509 146 HOH HOH . D 4 HOH A 10 510 34 HOH HOH . D 4 HOH A 11 511 4 HOH HOH . D 4 HOH A 12 512 114 HOH HOH . D 4 HOH A 13 513 95 HOH HOH . D 4 HOH A 14 514 124 HOH HOH . D 4 HOH A 15 515 123 HOH HOH . D 4 HOH A 16 516 101 HOH HOH . D 4 HOH A 17 517 128 HOH HOH . D 4 HOH A 18 518 135 HOH HOH . D 4 HOH A 19 519 45 HOH HOH . D 4 HOH A 20 520 147 HOH HOH . D 4 HOH A 21 521 165 HOH HOH . D 4 HOH A 22 522 5 HOH HOH . D 4 HOH A 23 523 85 HOH HOH . D 4 HOH A 24 524 24 HOH HOH . D 4 HOH A 25 525 75 HOH HOH . D 4 HOH A 26 526 8 HOH HOH . D 4 HOH A 27 527 158 HOH HOH . D 4 HOH A 28 528 168 HOH HOH . D 4 HOH A 29 529 30 HOH HOH . D 4 HOH A 30 530 115 HOH HOH . D 4 HOH A 31 531 131 HOH HOH . D 4 HOH A 32 532 91 HOH HOH . D 4 HOH A 33 533 71 HOH HOH . D 4 HOH A 34 534 56 HOH HOH . D 4 HOH A 35 535 157 HOH HOH . D 4 HOH A 36 536 29 HOH HOH . D 4 HOH A 37 537 41 HOH HOH . D 4 HOH A 38 538 40 HOH HOH . D 4 HOH A 39 539 37 HOH HOH . D 4 HOH A 40 540 32 HOH HOH . D 4 HOH A 41 541 132 HOH HOH . D 4 HOH A 42 542 99 HOH HOH . D 4 HOH A 43 543 26 HOH HOH . D 4 HOH A 44 544 149 HOH HOH . D 4 HOH A 45 545 127 HOH HOH . D 4 HOH A 46 546 122 HOH HOH . D 4 HOH A 47 547 21 HOH HOH . D 4 HOH A 48 548 185 HOH HOH . D 4 HOH A 49 549 78 HOH HOH . D 4 HOH A 50 550 169 HOH HOH . D 4 HOH A 51 551 86 HOH HOH . D 4 HOH A 52 552 100 HOH HOH . D 4 HOH A 53 553 36 HOH HOH . D 4 HOH A 54 554 52 HOH HOH . D 4 HOH A 55 555 14 HOH HOH . D 4 HOH A 56 556 96 HOH HOH . D 4 HOH A 57 557 126 HOH HOH . D 4 HOH A 58 558 12 HOH HOH . D 4 HOH A 59 559 134 HOH HOH . D 4 HOH A 60 560 33 HOH HOH . D 4 HOH A 61 561 7 HOH HOH . D 4 HOH A 62 562 119 HOH HOH . D 4 HOH A 63 563 70 HOH HOH . D 4 HOH A 64 564 156 HOH HOH . D 4 HOH A 65 565 187 HOH HOH . D 4 HOH A 66 566 90 HOH HOH . D 4 HOH A 67 567 13 HOH HOH . D 4 HOH A 68 568 64 HOH HOH . D 4 HOH A 69 569 1 HOH HOH . D 4 HOH A 70 570 108 HOH HOH . D 4 HOH A 71 571 44 HOH HOH . D 4 HOH A 72 572 58 HOH HOH . D 4 HOH A 73 573 42 HOH HOH . D 4 HOH A 74 574 50 HOH HOH . D 4 HOH A 75 575 10 HOH HOH . D 4 HOH A 76 576 17 HOH HOH . D 4 HOH A 77 577 142 HOH HOH . D 4 HOH A 78 578 117 HOH HOH . D 4 HOH A 79 579 11 HOH HOH . D 4 HOH A 80 580 121 HOH HOH . D 4 HOH A 81 581 19 HOH HOH . D 4 HOH A 82 582 155 HOH HOH . D 4 HOH A 83 583 186 HOH HOH . D 4 HOH A 84 584 182 HOH HOH . D 4 HOH A 85 585 9 HOH HOH . D 4 HOH A 86 586 15 HOH HOH . D 4 HOH A 87 587 54 HOH HOH . D 4 HOH A 88 588 28 HOH HOH . D 4 HOH A 89 589 62 HOH HOH . D 4 HOH A 90 590 43 HOH HOH . D 4 HOH A 91 591 159 HOH HOH . D 4 HOH A 92 592 27 HOH HOH . D 4 HOH A 93 593 163 HOH HOH . D 4 HOH A 94 594 148 HOH HOH . D 4 HOH A 95 595 59 HOH HOH . D 4 HOH A 96 596 46 HOH HOH . D 4 HOH A 97 597 39 HOH HOH . D 4 HOH A 98 598 92 HOH HOH . D 4 HOH A 99 599 35 HOH HOH . D 4 HOH A 100 600 74 HOH HOH . D 4 HOH A 101 601 38 HOH HOH . D 4 HOH A 102 602 140 HOH HOH . D 4 HOH A 103 603 97 HOH HOH . D 4 HOH A 104 604 31 HOH HOH . D 4 HOH A 105 605 129 HOH HOH . D 4 HOH A 106 606 67 HOH HOH . D 4 HOH A 107 607 170 HOH HOH . D 4 HOH A 108 608 6 HOH HOH . D 4 HOH A 109 609 16 HOH HOH . D 4 HOH A 110 610 137 HOH HOH . D 4 HOH A 111 611 139 HOH HOH . D 4 HOH A 112 612 136 HOH HOH . D 4 HOH A 113 613 3 HOH HOH . D 4 HOH A 114 614 77 HOH HOH . D 4 HOH A 115 615 84 HOH HOH . D 4 HOH A 116 616 25 HOH HOH . D 4 HOH A 117 617 150 HOH HOH . D 4 HOH A 118 618 184 HOH HOH . D 4 HOH A 119 619 87 HOH HOH . D 4 HOH A 120 620 82 HOH HOH . D 4 HOH A 121 621 145 HOH HOH . D 4 HOH A 122 622 79 HOH HOH . D 4 HOH A 123 623 2 HOH HOH . D 4 HOH A 124 624 120 HOH HOH . D 4 HOH A 125 625 69 HOH HOH . D 4 HOH A 126 626 53 HOH HOH . D 4 HOH A 127 627 93 HOH HOH . D 4 HOH A 128 628 60 HOH HOH . D 4 HOH A 129 629 22 HOH HOH . D 4 HOH A 130 630 118 HOH HOH . D 4 HOH A 131 631 153 HOH HOH . D 4 HOH A 132 632 160 HOH HOH . D 4 HOH A 133 633 76 HOH HOH . D 4 HOH A 134 634 73 HOH HOH . D 4 HOH A 135 635 55 HOH HOH . D 4 HOH A 136 636 116 HOH HOH . D 4 HOH A 137 637 49 HOH HOH . D 4 HOH A 138 638 141 HOH HOH . D 4 HOH A 139 639 172 HOH HOH . D 4 HOH A 140 640 179 HOH HOH . D 4 HOH A 141 641 23 HOH HOH . D 4 HOH A 142 642 175 HOH HOH . D 4 HOH A 143 643 103 HOH HOH . D 4 HOH A 144 644 68 HOH HOH . D 4 HOH A 145 645 57 HOH HOH . D 4 HOH A 146 646 18 HOH HOH . D 4 HOH A 147 647 130 HOH HOH . D 4 HOH A 148 648 63 HOH HOH . D 4 HOH A 149 649 48 HOH HOH . D 4 HOH A 150 650 109 HOH HOH . D 4 HOH A 151 651 65 HOH HOH . D 4 HOH A 152 652 161 HOH HOH . D 4 HOH A 153 653 154 HOH HOH . D 4 HOH A 154 654 47 HOH HOH . D 4 HOH A 155 655 138 HOH HOH . D 4 HOH A 156 656 125 HOH HOH . D 4 HOH A 157 657 174 HOH HOH . D 4 HOH A 158 658 20 HOH HOH . D 4 HOH A 159 659 143 HOH HOH . D 4 HOH A 160 660 176 HOH HOH . D 4 HOH A 161 661 110 HOH HOH . D 4 HOH A 162 662 183 HOH HOH . D 4 HOH A 163 663 66 HOH HOH . D 4 HOH A 164 664 94 HOH HOH . D 4 HOH A 165 665 144 HOH HOH . D 4 HOH A 166 666 98 HOH HOH . D 4 HOH A 167 667 162 HOH HOH . D 4 HOH A 168 668 104 HOH HOH . D 4 HOH A 169 669 181 HOH HOH . D 4 HOH A 170 670 167 HOH HOH . D 4 HOH A 171 671 191 HOH HOH . D 4 HOH A 172 672 189 HOH HOH . D 4 HOH A 173 673 188 HOH HOH . D 4 HOH A 174 674 164 HOH HOH . D 4 HOH A 175 675 88 HOH HOH . D 4 HOH A 176 676 111 HOH HOH . D 4 HOH A 177 677 106 HOH HOH . D 4 HOH A 178 678 193 HOH HOH . D 4 HOH A 179 679 89 HOH HOH . D 4 HOH A 180 680 105 HOH HOH . D 4 HOH A 181 681 113 HOH HOH . D 4 HOH A 182 682 171 HOH HOH . D 4 HOH A 183 683 178 HOH HOH . D 4 HOH A 184 684 51 HOH HOH . D 4 HOH A 185 685 83 HOH HOH . D 4 HOH A 186 686 151 HOH HOH . D 4 HOH A 187 687 192 HOH HOH . D 4 HOH A 188 688 112 HOH HOH . D 4 HOH A 189 689 152 HOH HOH . D 4 HOH A 190 690 72 HOH HOH . D 4 HOH A 191 691 80 HOH HOH . D 4 HOH A 192 692 107 HOH HOH . D 4 HOH A 193 693 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E64 . . . C 3 27.565 18.449 10.287 1 17.45 ? C1 E64 402 A 1 HETATM 2 O O1 E64 . . . C 3 27.389 17.205 10.397 1 17.66 ? O1 E64 402 A 1 HETATM 3 O O2 E64 . . . C 3 28.537 18.842 9.573 1 16.49 -1 O2 E64 402 A 1 HETATM 4 C C2 E64 . . . C 3 26.651 19.465 10.897 1 16.08 ? C2 E64 402 A 1 HETATM 5 C C3 E64 . . . C 3 27.504 20.712 11.302 1 17.13 ? C3 E64 402 A 1 HETATM 6 O O3 E64 . . . C 3 28.27 20.355 12.454 1 20.65 ? O3 E64 402 A 1 HETATM 7 C C4 E64 . . . C 3 26.544 21.824 11.631 1 19.07 ? C4 E64 402 A 1 HETATM 8 O O4 E64 . . . C 3 26.291 22.707 10.868 1 16.75 ? O4 E64 402 A 1 HETATM 9 N N1 E64 . . . C 3 25.864 21.8 12.907 1 18.12 ? N1 E64 402 A 1 HETATM 10 C C6 E64 . . . C 3 24.905 22.805 13.266 1 17.76 ? C6 E64 402 A 1 HETATM 11 C C7 E64 . . . C 3 23.582 22.107 13.682 1 18.09 ? C7 E64 402 A 1 HETATM 12 C C8 E64 . . . C 3 23.023 21.273 12.534 1 16.72 ? C8 E64 402 A 1 HETATM 13 C C9 E64 . . . C 3 21.671 20.721 13.044 1 20.67 ? C9 E64 402 A 1 HETATM 14 C C10 E64 . . . C 3 22.774 22.187 11.333 1 17.09 ? C10 E64 402 A 1 HETATM 15 C C11 E64 . . . C 3 25.476 23.611 14.414 1 26.02 ? C11 E64 402 A 1 HETATM 16 O O5 E64 . . . C 3 26.448 23.282 15 1 35.6 ? O5 E64 402 A 1 HETATM 17 N N2 E64 . . . C 3 24.835 24.81 14.794 1 28.91 ? N2 E64 402 A 1 HETATM 18 C C12 E64 . . . C 3 25.347 25.588 15.914 1 30.24 ? C12 E64 402 A 1 HETATM 19 C C13 E64 . . . C 3 26.031 26.836 15.394 1 32.21 ? C13 E64 402 A 1 HETATM 20 C C14 E64 . . . C 3 26.235 27.79 16.568 1 51.97 ? C14 E64 402 A 1 HETATM 21 C C15 E64 . . . C 3 24.875 28.272 17.064 1 69.13 ? C15 E64 402 A 1 HETATM 22 N N3 E64 . . . C 3 24.924 28.795 18.417 1 74.2 ? N3 E64 402 A 1 HETATM 23 C C16 E64 . . . C 3 23.803 28.517 19.301 1 60.72 ? C16 E64 402 A 1 HETATM 24 N N4 E64 . . . C 3 22.822 27.846 18.901 1 56.8 ? N4 E64 402 A 1 HETATM 25 N N5 E64 . . . C 3 23.819 28.952 20.466 1 63.77 ? N5 E64 402 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #